Wall clock time and date at job start Wed Apr 1 2020 01:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29432 * 124.80284 * 2 1 4 4 C 1.30944 * 117.36198 * 179.97438 * 3 2 1 5 5 C 1.35667 * 114.19307 * 359.97438 * 4 3 2 6 6 C 1.46674 * 126.13118 * 180.02562 * 5 4 3 7 7 O 1.21693 * 120.00028 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00184 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00187 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46851 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47416 * 294.99799 * 10 9 8 12 12 C 1.53001 * 109.46848 * 174.99855 * 10 9 8 13 13 O 1.42897 * 109.47472 * 305.00379 * 12 10 9 14 14 N 1.46901 * 109.47245 * 55.00305 * 10 9 8 15 15 C 1.46895 * 110.99816 * 204.99659 * 14 10 9 16 16 C 1.50706 * 109.47182 * 179.97438 * 15 14 10 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00261 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99599 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99834 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99780 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99495 * 23 21 19 27 27 S 1.70949 * 124.80471 * 180.30817 * 2 1 3 28 28 H 1.08994 * 109.46904 * 90.02716 * 1 2 3 29 29 H 1.08996 * 109.47054 * 210.02797 * 1 2 3 30 30 H 1.08999 * 109.46931 * 330.02657 * 1 2 3 31 31 H 1.07996 * 122.90393 * 180.02562 * 4 3 2 32 32 H 0.97002 * 119.99552 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.47243 * 60.00001 * 9 8 6 34 34 H 1.08999 * 109.46836 * 299.99904 * 9 8 6 35 35 H 1.09005 * 109.46975 * 65.00179 * 12 10 9 36 36 H 1.08997 * 109.47675 * 185.00010 * 12 10 9 37 37 H 0.96703 * 114.00471 * 180.02562 * 13 12 10 38 38 H 1.00902 * 110.99849 * 328.95038 * 14 10 9 39 39 H 1.09001 * 109.47613 * 60.00104 * 15 14 10 40 40 H 1.08998 * 109.47678 * 300.00000 * 15 14 10 41 41 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 42 42 H 0.97009 * 120.00065 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5442 0.8932 0.0005 5 6 3.9352 -0.4059 0.0015 6 6 5.3189 -0.8926 0.0028 7 8 6.2426 -0.1003 0.0026 8 7 5.5673 -2.2173 0.0033 9 6 6.9493 -2.7034 0.0051 10 6 6.9517 -4.2334 0.0059 11 1 6.5170 -4.5970 0.9369 12 6 8.3897 -4.7411 -0.1179 13 8 8.9980 -4.1709 -1.2784 14 7 6.1595 -4.7249 -1.1294 15 6 5.6396 -6.0729 -0.8641 16 6 4.8335 -6.5424 -2.0477 17 8 4.7052 -5.8247 -3.0172 18 7 4.2602 -7.7620 -2.0316 19 6 3.5274 -8.1892 -3.1086 20 1 3.4091 -7.5483 -3.9698 21 6 2.9367 -9.4468 -3.0922 22 7 2.2339 -9.8561 -4.1243 23 14 3.1406 -10.5551 -1.6024 24 1 2.0391 -10.2986 -0.6401 25 1 3.1009 -11.9757 -2.0331 26 1 4.4441 -10.2720 -0.9496 27 16 2.4828 -1.4036 -0.0075 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.2434 1.7163 0.0010 32 1 4.8310 -2.8488 0.0031 33 1 7.4614 -2.3392 0.8957 34 1 7.4637 -2.3393 -0.8842 35 1 8.9549 -4.4514 0.7680 36 1 8.3851 -5.8274 -0.2068 37 1 9.9130 -4.4498 -1.4203 38 1 5.4109 -4.0858 -1.3515 39 1 5.0043 -6.0496 0.0214 40 1 6.4715 -6.7568 -0.6964 41 1 4.3667 -8.3378 -1.2583 42 1 1.8212 -10.7340 -4.1127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676510234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:49 Heat of formation + Delta-G solvation = -96.236245 kcal Electronic energy + Delta-G solvation = -26901.378493 eV Core-core repulsion = 22814.477978 eV Total energy + Delta-G solvation = -4086.900515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39252 -40.56288 -40.16258 -38.74414 -36.61582 -36.00138 -35.02974 -33.72950 -33.37008 -31.54535 -29.82259 -28.05456 -26.96512 -25.56212 -25.14664 -22.89907 -21.69412 -21.30542 -20.78022 -20.25523 -19.55482 -18.46696 -18.29649 -17.60897 -17.14241 -16.98930 -16.80546 -16.58302 -16.05275 -15.95778 -15.61592 -15.45569 -15.06808 -15.01386 -14.66159 -14.59129 -14.51331 -14.27249 -14.06003 -13.58025 -13.40230 -13.27964 -13.11281 -12.94750 -12.71744 -12.68512 -12.39481 -12.01349 -11.96142 -11.49391 -11.48810 -10.86687 -10.75649 -10.69876 -10.42487 -10.32167 -10.23085 -9.97979 -9.35365 -8.39127 -6.00302 -0.90361 0.04550 0.43917 1.27046 1.32141 1.37592 1.46911 1.84305 1.97676 2.00143 2.25183 2.65994 3.03151 3.17495 3.30090 3.42732 3.60822 3.78214 3.91700 4.06601 4.14161 4.20813 4.35193 4.40938 4.51298 4.56739 4.58803 4.62385 4.69302 4.78435 4.87971 4.96873 5.11587 5.13643 5.54325 5.89958 6.02726 6.11241 6.24332 6.47456 6.61550 6.85099 6.90489 7.08966 7.41780 7.99025 8.78542 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.003166 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.355721 B = 8840.588419 C =11365.805533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.066 3.934 3 N -0.504 5.504 4 C 0.122 3.878 5 C -0.324 4.324 6 C 0.600 3.400 7 O -0.560 6.560 8 N -0.718 5.718 9 C 0.127 3.873 10 C 0.077 3.923 11 H 0.096 0.904 12 C 0.088 3.912 13 O -0.584 6.584 14 N -0.678 5.678 15 C 0.058 3.942 16 C 0.447 3.553 17 O -0.614 6.614 18 N -0.589 5.589 19 C -0.328 4.328 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.255 1.255 25 H -0.279 1.279 26 H -0.229 1.229 27 S 0.199 5.801 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.191 0.809 32 H 0.402 0.598 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.390 0.610 38 H 0.340 0.660 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.390 0.610 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 12.141 19.869 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.208 4.208 3 N -0.219 5.219 4 C -0.037 4.037 5 C -0.448 4.448 6 C 0.386 3.614 7 O -0.441 6.441 8 N -0.370 5.370 9 C 0.004 3.996 10 C -0.032 4.032 11 H 0.114 0.886 12 C 0.009 3.991 13 O -0.391 6.391 14 N -0.313 5.313 15 C -0.074 4.074 16 C 0.235 3.765 17 O -0.499 6.499 18 N -0.230 5.230 19 C -0.457 4.457 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.179 1.179 25 H -0.204 1.204 26 H -0.152 1.152 27 S 0.456 5.544 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.207 0.793 32 H 0.238 0.762 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.239 0.761 38 H 0.160 0.840 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.226 0.774 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.640 12.461 18.711 22.773 hybrid contribution 0.025 -0.380 0.458 0.596 sum 3.664 12.081 19.168 22.952 Atomic orbital electron populations 1.20806 0.81956 1.06210 1.05692 1.28224 1.03850 0.90544 0.98169 1.66322 1.04693 1.31989 1.18931 1.22326 0.91201 0.95679 0.94502 1.25658 0.98138 0.98711 1.22331 1.16830 0.86326 0.82504 0.75713 1.90816 1.45513 1.55924 1.51829 1.45899 1.10140 1.06098 1.74837 1.21509 0.81321 0.93410 1.03366 1.22091 0.95284 0.92646 0.93179 0.88609 1.22226 0.91350 0.97211 0.88336 1.86573 1.32485 1.72824 1.47246 1.59998 1.28975 1.02643 1.39716 1.21788 0.98964 0.92544 0.94101 1.20973 0.83045 0.82075 0.90386 1.90573 1.64677 1.56623 1.37982 1.41994 1.47755 1.15874 1.17418 1.18988 1.28356 1.01448 0.96947 0.92883 1.26134 0.95425 0.98329 1.01532 1.69812 1.34205 1.21136 1.32464 0.85355 0.80855 0.77535 0.77687 1.17882 1.20419 1.15245 1.84023 0.95061 1.10525 1.64821 0.87741 0.87482 0.87829 0.79259 0.76204 0.89050 0.91667 0.90379 0.92479 0.76100 0.83999 0.89445 0.86581 0.77390 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.46 71.24 0.75 -0.13 16 2 C 0.07 1.19 7.39 88.46 0.65 1.84 16 3 N -0.50 -11.35 10.51 -190.29 -2.00 -13.35 16 4 C 0.12 2.86 11.09 84.23 0.93 3.80 16 5 C -0.32 -7.70 6.48 23.88 0.15 -7.54 16 6 C 0.60 16.09 7.79 86.45 0.67 16.77 16 7 O -0.56 -18.44 16.87 -4.32 -0.07 -18.51 16 8 N -0.72 -16.20 4.98 -467.09 -2.33 -18.53 16 9 C 0.13 2.76 5.20 86.38 0.45 3.20 16 10 C 0.08 1.45 2.60 44.92 0.12 1.57 16 11 H 0.10 1.19 7.80 -2.39 -0.02 1.17 16 12 C 0.09 1.42 6.80 71.98 0.49 1.91 16 13 O -0.58 -12.69 12.64 -148.98 -1.88 -14.57 16 14 N -0.68 -18.74 5.87 -495.58 -2.91 -21.65 16 15 C 0.06 1.56 5.96 85.56 0.51 2.08 16 16 C 0.45 19.16 7.82 87.66 0.69 19.84 16 17 O -0.61 -33.38 15.78 -3.08 -0.05 -33.43 16 18 N -0.59 -26.32 5.09 -306.98 -1.56 -27.88 16 19 C -0.33 -18.71 10.16 84.04 0.85 -17.85 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 22 N -0.94 -55.42 13.96 21.66 0.30 -55.12 16 23 Si 0.97 37.01 27.74 68.60 1.90 38.91 16 24 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 25 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 26 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 27 S 0.20 3.69 22.31 -56.49 -1.26 2.43 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.40 8.03 6.56 -92.71 -0.61 7.42 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.85 7.40 -2.39 -0.02 1.83 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.06 0.87 7.35 -2.39 -0.02 0.86 16 37 H 0.39 5.00 9.12 -74.06 -0.68 4.33 16 38 H 0.34 10.35 6.41 -89.69 -0.58 9.78 16 39 H 0.09 1.68 8.06 -2.39 -0.02 1.66 16 40 H 0.12 2.58 7.36 -2.39 -0.02 2.56 16 41 H 0.39 14.09 5.76 -92.71 -0.53 13.55 16 42 H 0.28 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -87.11 374.00 -4.46 -91.57 By element: Atomic # 1 Polarization: 46.35 SS G_CDS: -1.33 Total: 45.02 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 6.73 Total: 25.10 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -8.50 Total: -136.52 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -2.00 Total: -66.51 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.90 Total: 38.91 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.26 Total: 2.43 kcal Total: -87.11 -4.46 -91.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676510234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.665 kcal (2) G-P(sol) polarization free energy of solvation -87.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds