Wall clock time and date at job start Wed Apr 1 2020 01:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35364 * 126.38589 * 2 1 4 4 C 1.41500 * 105.50498 * 180.02562 * 3 2 1 5 5 C 1.47707 * 126.52109 * 179.97438 * 4 3 2 6 6 O 1.21569 * 119.99756 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00127 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99858 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47208 * 35.00495 * 8 7 5 10 10 C 1.52997 * 109.47349 * 275.00218 * 8 7 5 11 11 O 1.42898 * 109.47319 * 295.00332 * 10 8 7 12 12 C 1.53007 * 109.46612 * 155.00194 * 8 7 5 13 13 N 1.46494 * 109.47545 * 305.00137 * 12 8 7 14 14 C 1.34776 * 120.00130 * 180.02562 * 13 12 8 15 15 O 1.21273 * 120.00018 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99797 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47010 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99830 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00541 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99665 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00095 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99887 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46910 * 89.99655 * 22 20 18 24 24 H 1.48496 * 109.46830 * 209.99860 * 22 20 18 25 25 H 1.48495 * 109.47045 * 329.99614 * 22 20 18 26 26 N 1.31820 * 106.96088 * 0.23222 * 4 3 2 27 27 N 1.28464 * 110.06869 * 359.60124 * 26 4 3 28 28 H 0.97011 * 124.87888 * 180.20369 * 27 26 4 29 29 H 1.08999 * 109.46778 * 90.00580 * 1 2 3 30 30 H 1.09003 * 109.46942 * 210.00121 * 1 2 3 31 31 H 1.08998 * 109.46964 * 330.00450 * 1 2 3 32 32 H 1.08003 * 127.24286 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00320 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.47153 * 175.00025 * 10 8 7 35 35 H 1.09001 * 109.46832 * 55.00216 * 10 8 7 36 36 H 0.96701 * 113.99881 * 180.02562 * 11 10 8 37 37 H 1.08995 * 109.47221 * 65.00654 * 12 8 7 38 38 H 1.09005 * 109.46665 * 184.99888 * 12 8 7 39 39 H 0.97003 * 119.99396 * 359.97438 * 13 12 8 40 40 H 1.08998 * 109.47149 * 299.99692 * 16 14 13 41 41 H 1.09005 * 109.47530 * 60.00018 * 16 14 13 42 42 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8214 2.5956 -0.0020 7 7 6.0731 0.7609 -0.0014 8 6 7.3073 1.5502 -0.0027 9 1 7.1601 2.4557 0.5860 10 6 7.6685 1.9297 -1.4402 11 8 7.9750 0.7475 -2.1822 12 6 8.4416 0.7241 0.6071 13 7 8.0463 0.2601 1.9393 14 6 8.8938 -0.4906 2.6704 15 8 9.9835 -0.7825 2.2253 16 6 8.4869 -0.9683 4.0405 17 16 9.8288 -1.9455 4.7620 18 6 9.1041 -2.3622 6.3130 19 1 8.1099 -2.0165 6.5549 20 6 9.8110 -3.1348 7.2241 21 7 11.0226 -3.5565 6.9291 22 14 9.0425 -3.5772 8.8682 23 1 8.2981 -4.8556 8.7386 24 1 10.1102 -3.7273 9.8893 25 1 8.1082 -2.5003 9.2837 26 7 3.5420 -0.7297 -0.0060 27 7 2.3081 -1.0870 -0.0004 28 1 1.9966 -2.0058 0.0001 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 2.0057 2.1260 -0.0004 33 1 6.1171 -0.2081 -0.0013 34 1 8.5355 2.5902 -1.4347 35 1 6.8250 2.4412 -1.9038 36 1 8.2139 0.9130 -3.1045 37 1 8.6484 -0.1355 -0.0304 38 1 9.3370 1.3403 0.6878 39 1 7.1748 0.4940 2.2954 40 1 8.2794 -0.1089 4.6781 41 1 7.5918 -1.5851 3.9594 42 1 11.5164 -4.0967 7.5657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680199224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:56 Heat of formation + Delta-G solvation = -53.185614 kcal Electronic energy + Delta-G solvation = -26537.895302 eV Core-core repulsion = 22452.861602 eV Total energy + Delta-G solvation = -4085.033700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.03930 -40.09900 -38.95514 -37.42759 -35.43512 -33.70167 -33.08229 -32.40752 -32.27034 -30.57681 -28.98879 -27.45438 -25.69530 -25.25999 -24.62648 -21.65230 -21.29607 -20.38729 -20.29321 -18.11605 -17.97048 -17.74826 -17.20947 -16.57471 -16.31974 -16.17824 -15.47937 -15.14411 -14.99866 -14.78692 -14.51617 -14.24412 -14.06316 -13.90735 -13.69307 -13.62354 -13.41998 -13.13380 -12.88630 -12.69464 -12.55614 -12.25044 -11.78000 -11.49502 -11.21536 -11.04870 -11.00431 -10.74730 -10.52988 -10.22680 -9.80250 -9.78828 -9.42780 -9.33948 -9.30353 -9.05136 -8.86092 -8.20890 -6.47260 -6.19665 -3.89786 1.24210 1.71391 2.42301 2.84500 3.06203 3.14106 3.15177 3.23519 3.29219 3.33982 3.74086 3.96854 4.08097 4.22384 4.24214 4.45456 4.54943 4.80708 4.96077 4.99229 5.05939 5.15344 5.17731 5.19958 5.21736 5.32203 5.33835 5.50991 5.56258 5.69144 5.91721 5.95530 5.99475 6.16306 6.18038 6.57200 6.61675 7.18430 7.33688 7.52615 7.61620 7.72310 7.93441 8.37354 8.64471 9.25609 10.87753 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.002558 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.663051 B =10943.764660 C =13211.533541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.012 3.988 3 C -0.178 4.178 4 C -0.013 4.013 5 C 0.607 3.393 6 O -0.535 6.535 7 N -0.705 5.705 8 C 0.138 3.862 9 H 0.110 0.890 10 C 0.067 3.933 11 O -0.566 6.566 12 C 0.117 3.883 13 N -0.740 5.740 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.252 5.252 27 N -0.378 5.378 28 H 0.446 0.554 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.413 0.587 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.380 0.620 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 9.981 -19.302 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.174 4.174 5 C 0.392 3.608 6 O -0.410 6.410 7 N -0.358 5.358 8 C 0.033 3.967 9 H 0.127 0.873 10 C -0.013 4.013 11 O -0.371 6.371 12 C -0.008 4.008 13 N -0.395 5.395 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.088 5.088 27 N -0.093 5.093 28 H 0.291 0.709 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.274 9.083 -19.414 28.167 hybrid contribution -2.709 0.182 1.187 2.963 sum -20.983 9.265 -18.228 29.298 Atomic orbital electron populations 1.20371 0.86409 1.04187 1.03446 1.21498 0.95527 0.87123 1.07182 1.21515 0.90367 0.99787 1.08916 1.21859 0.95097 0.89820 1.10638 1.16895 0.81696 0.86373 0.75861 1.90798 1.86873 1.12809 1.50518 1.45853 1.04416 1.11341 1.74142 1.21416 0.83655 0.96151 0.95493 0.87258 1.22523 0.99666 0.87430 0.91632 1.86501 1.91472 1.32056 1.27118 1.21490 0.95869 0.99525 0.83899 1.45992 1.20149 1.55708 1.17641 1.20278 0.84255 0.77141 0.86423 1.90705 1.21461 1.55252 1.71581 1.23531 1.06772 1.04541 0.95547 1.85383 1.17600 1.63240 1.17043 1.22871 1.04592 1.38642 1.02201 0.90971 1.24994 0.94790 0.95089 0.98741 1.70022 1.10458 1.33882 1.35943 0.86169 0.78763 0.78832 0.81740 1.20305 1.20753 1.19707 1.73598 1.01677 1.14941 1.18598 1.43346 1.02911 1.09732 1.53320 0.70947 0.90208 0.90943 0.89382 0.81980 0.75047 0.92101 0.92540 0.77286 0.89657 0.90051 0.76809 0.89253 0.89286 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.26 10.44 36.01 0.38 0.12 16 2 C 0.01 0.08 7.23 -82.21 -0.59 -0.51 16 3 C -0.18 -1.64 10.73 -39.36 -0.42 -2.06 16 4 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 5 C 0.61 7.24 7.79 -12.39 -0.10 7.15 16 6 O -0.54 -7.52 16.59 5.30 0.09 -7.43 16 7 N -0.71 -7.45 4.46 -54.79 -0.24 -7.70 16 8 C 0.14 1.38 2.53 -67.93 -0.17 1.21 16 9 H 0.11 1.09 7.58 -51.93 -0.39 0.70 16 10 C 0.07 0.57 6.85 37.16 0.25 0.82 16 11 O -0.57 -5.01 12.64 -35.23 -0.45 -5.45 16 12 C 0.12 1.42 5.12 -4.04 -0.02 1.40 16 13 N -0.74 -10.36 5.39 -60.30 -0.32 -10.69 16 14 C 0.53 10.21 7.85 -10.99 -0.09 10.13 16 15 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 16 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 N -0.25 -2.57 11.92 33.42 0.40 -2.17 16 27 N -0.38 -2.68 6.83 33.50 0.23 -2.45 16 28 H 0.45 1.65 8.96 -190.43 -1.71 -0.05 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.41 4.48 8.33 -40.82 -0.34 4.14 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.38 1.76 9.12 45.56 0.42 2.18 16 37 H 0.09 1.17 7.39 -51.93 -0.38 0.79 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 4.82 8.14 -40.82 -0.33 4.49 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -38.98 383.99 -7.95 -46.93 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.09 Total: 6.51 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -0.93 Total: 1.42 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.79 Total: -48.68 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.27 Total: -24.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.98 -7.95 -46.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680199224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.256 kcal (2) G-P(sol) polarization free energy of solvation -38.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds