Wall clock time and date at job start Wed Apr 1 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35364 * 126.38589 * 2 1 4 4 C 1.41500 * 105.50498 * 180.02562 * 3 2 1 5 5 C 1.47707 * 126.52109 * 179.97438 * 4 3 2 6 6 O 1.21569 * 119.99756 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00127 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99858 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47208 * 35.00495 * 8 7 5 10 10 C 1.52997 * 109.47349 * 275.00218 * 8 7 5 11 11 O 1.42898 * 109.47319 * 295.00332 * 10 8 7 12 12 C 1.53007 * 109.46612 * 155.00194 * 8 7 5 13 13 N 1.46494 * 109.47545 * 305.00137 * 12 8 7 14 14 C 1.34776 * 120.00130 * 180.02562 * 13 12 8 15 15 O 1.21273 * 120.00018 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99797 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47010 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99830 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00541 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99665 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00095 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99887 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46910 * 89.99655 * 22 20 18 24 24 H 1.48496 * 109.46830 * 209.99860 * 22 20 18 25 25 H 1.48495 * 109.47045 * 329.99614 * 22 20 18 26 26 N 1.31820 * 106.96088 * 0.23222 * 4 3 2 27 27 N 1.28464 * 110.06869 * 359.60124 * 26 4 3 28 28 H 0.97011 * 124.87888 * 180.20369 * 27 26 4 29 29 H 1.08999 * 109.46778 * 90.00580 * 1 2 3 30 30 H 1.09003 * 109.46942 * 210.00121 * 1 2 3 31 31 H 1.08998 * 109.46964 * 330.00450 * 1 2 3 32 32 H 1.08003 * 127.24286 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00320 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.47153 * 175.00025 * 10 8 7 35 35 H 1.09001 * 109.46832 * 55.00216 * 10 8 7 36 36 H 0.96701 * 113.99881 * 180.02562 * 11 10 8 37 37 H 1.08995 * 109.47221 * 65.00654 * 12 8 7 38 38 H 1.09005 * 109.46665 * 184.99888 * 12 8 7 39 39 H 0.97003 * 119.99396 * 359.97438 * 13 12 8 40 40 H 1.08998 * 109.47149 * 299.99692 * 16 14 13 41 41 H 1.09005 * 109.47530 * 60.00018 * 16 14 13 42 42 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8214 2.5956 -0.0020 7 7 6.0731 0.7609 -0.0014 8 6 7.3073 1.5502 -0.0027 9 1 7.1601 2.4557 0.5860 10 6 7.6685 1.9297 -1.4402 11 8 7.9750 0.7475 -2.1822 12 6 8.4416 0.7241 0.6071 13 7 8.0463 0.2601 1.9393 14 6 8.8938 -0.4906 2.6704 15 8 9.9835 -0.7825 2.2253 16 6 8.4869 -0.9683 4.0405 17 16 9.8288 -1.9455 4.7620 18 6 9.1041 -2.3622 6.3130 19 1 8.1099 -2.0165 6.5549 20 6 9.8110 -3.1348 7.2241 21 7 11.0226 -3.5565 6.9291 22 14 9.0425 -3.5772 8.8682 23 1 8.2981 -4.8556 8.7386 24 1 10.1102 -3.7273 9.8893 25 1 8.1082 -2.5003 9.2837 26 7 3.5420 -0.7297 -0.0060 27 7 2.3081 -1.0870 -0.0004 28 1 1.9966 -2.0058 0.0001 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 2.0057 2.1260 -0.0004 33 1 6.1171 -0.2081 -0.0013 34 1 8.5355 2.5902 -1.4347 35 1 6.8250 2.4412 -1.9038 36 1 8.2139 0.9130 -3.1045 37 1 8.6484 -0.1355 -0.0304 38 1 9.3370 1.3403 0.6878 39 1 7.1748 0.4940 2.2954 40 1 8.2794 -0.1089 4.6781 41 1 7.5918 -1.5851 3.9594 42 1 11.5164 -4.0967 7.5657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680199224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:55 Heat of formation + Delta-G solvation = -87.300557 kcal Electronic energy + Delta-G solvation = -26539.374637 eV Core-core repulsion = 22452.861602 eV Total energy + Delta-G solvation = -4086.513035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.68193 -41.12060 -40.31791 -38.27865 -36.41636 -34.81148 -34.58480 -33.68191 -32.96946 -31.73279 -30.29330 -27.89875 -27.71214 -26.44404 -25.45320 -22.29592 -22.13051 -21.76391 -21.22020 -19.86137 -18.77088 -18.51130 -18.18348 -17.74654 -17.50426 -16.93693 -16.88545 -16.72879 -16.42082 -15.94991 -15.83039 -15.25056 -14.85142 -14.80573 -14.78666 -14.69087 -14.35808 -14.16922 -13.89660 -13.70444 -13.39006 -13.17265 -13.09882 -13.01363 -12.89168 -12.63460 -12.39128 -11.88688 -11.73783 -11.42325 -11.14748 -11.03713 -10.90741 -10.52614 -10.29047 -10.19978 -10.15731 -9.92907 -8.67097 -8.35070 -6.13139 0.46929 1.11095 1.25412 1.42005 1.45563 1.56524 1.58421 1.80241 2.11617 2.24836 2.27515 2.32645 2.98867 3.28987 3.30849 3.37525 3.57989 3.80071 3.90809 4.03829 4.06349 4.23981 4.30263 4.43895 4.48665 4.50170 4.58105 4.60137 4.67487 4.79829 4.91276 5.03133 5.11773 5.26004 5.35338 5.38739 5.41259 6.08127 6.19350 6.34907 6.40430 6.82970 6.88201 7.06053 7.06378 7.18250 8.74156 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.002558 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.663051 B =10943.764660 C =13211.533541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.031 3.969 3 C -0.204 4.204 4 C -0.038 4.038 5 C 0.607 3.393 6 O -0.562 6.562 7 N -0.700 5.700 8 C 0.142 3.858 9 H 0.113 0.887 10 C 0.072 3.928 11 O -0.584 6.584 12 C 0.122 3.878 13 N -0.714 5.714 14 C 0.537 3.463 15 O -0.560 6.560 16 C -0.131 4.131 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.259 1.259 26 N -0.272 5.272 27 N -0.367 5.367 28 H 0.460 0.540 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.412 0.588 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.411 0.589 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.630 10.277 -19.143 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.232 4.232 4 C -0.198 4.198 5 C 0.393 3.607 6 O -0.439 6.439 7 N -0.351 5.351 8 C 0.038 3.962 9 H 0.131 0.869 10 C -0.007 4.007 11 O -0.392 6.392 12 C -0.002 4.002 13 N -0.368 5.368 14 C 0.323 3.677 15 O -0.438 6.438 16 C -0.282 4.282 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.099 0.901 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.183 1.183 26 N -0.109 5.109 27 N -0.085 5.085 28 H 0.308 0.692 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.183 0.817 33 H 0.249 0.751 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.247 0.753 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.143 9.386 -19.295 30.124 hybrid contribution -1.926 0.115 1.003 2.174 sum -23.069 9.501 -18.293 30.936 Atomic orbital electron populations 1.20541 0.83432 1.05504 1.04776 1.21996 0.97048 0.86071 1.04455 1.21731 0.90183 1.00816 1.10430 1.21871 0.95358 0.90341 1.12236 1.17055 0.82208 0.86143 0.75309 1.90771 1.87286 1.13848 1.52000 1.45827 1.04372 1.11226 1.73680 1.21433 0.82587 0.95540 0.96684 0.86876 1.22464 1.00439 0.87505 0.90325 1.86455 1.91583 1.32477 1.28698 1.21548 0.96999 0.99342 0.82319 1.45735 1.19681 1.53638 1.17784 1.19996 0.84123 0.77524 0.86107 1.90696 1.23438 1.57332 1.72353 1.23374 1.04222 1.04203 0.96393 1.85540 1.22469 1.65432 1.18444 1.23196 1.04979 1.38941 1.02384 0.90076 1.26134 0.95199 0.94679 1.03143 1.70183 1.12198 1.34714 1.37607 0.84947 0.77963 0.78985 0.76035 1.19245 1.20208 1.18303 1.73527 1.03260 1.14627 1.19526 1.43461 1.02219 1.10760 1.52038 0.69218 0.88733 0.89073 0.88614 0.81721 0.75145 0.90044 0.92783 0.75190 0.90830 0.89681 0.75314 0.87410 0.87479 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.44 71.24 0.74 0.48 16 2 C 0.03 0.36 7.23 41.41 0.30 0.66 16 3 C -0.20 -3.60 10.73 22.41 0.24 -3.36 16 4 C -0.04 -0.83 7.13 42.45 0.30 -0.53 16 5 C 0.61 14.34 7.79 86.75 0.68 15.01 16 6 O -0.56 -15.72 16.59 -3.93 -0.07 -15.79 16 7 N -0.70 -14.37 4.46 -445.53 -1.99 -16.36 16 8 C 0.14 2.70 2.53 44.99 0.11 2.82 16 9 H 0.11 2.12 7.58 -2.39 -0.02 2.10 16 10 C 0.07 1.13 6.85 71.98 0.49 1.62 16 11 O -0.58 -9.68 12.64 -148.98 -1.88 -11.57 16 12 C 0.12 2.86 5.12 86.38 0.44 3.30 16 13 N -0.71 -19.26 5.39 -463.07 -2.49 -21.76 16 14 C 0.54 20.40 7.85 87.66 0.69 21.09 16 15 O -0.56 -26.32 15.86 -3.01 -0.05 -26.37 16 16 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.55 -31.65 9.50 67.96 0.65 -31.01 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 22 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 26 N -0.27 -5.33 11.92 -48.17 -0.57 -5.90 16 27 N -0.37 -4.61 6.83 -47.93 -0.33 -4.93 16 28 H 0.46 2.48 8.96 -219.98 -1.97 0.51 16 29 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.41 8.72 8.33 -92.71 -0.77 7.95 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.40 3.18 9.12 -74.06 -0.68 2.50 16 37 H 0.07 1.98 7.39 -2.39 -0.02 1.97 16 38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.41 9.27 8.14 -92.71 -0.75 8.52 16 40 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 41 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.39 383.99 -3.74 -90.13 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -3.06 Total: 25.62 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.55 Total: 6.39 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -5.10 Total: -105.01 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -2.00 Total: -53.72 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -86.39 -3.74 -90.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680199224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.829 kcal (2) G-P(sol) polarization free energy of solvation -86.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds