Wall clock time and date at job start Wed Apr 1 2020 01:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33320 * 126.10592 * 2 1 4 4 C 1.30859 * 109.67931 * 180.27958 * 3 2 1 5 5 N 1.34492 * 109.16684 * 359.76365 * 4 3 2 6 6 H 0.97002 * 126.47174 * 179.97438 * 5 4 3 7 7 C 1.36661 * 126.10518 * 179.88614 * 2 1 3 8 8 C 1.46771 * 126.84421 * 359.97438 * 7 2 1 9 9 O 1.21677 * 120.00048 * 359.71504 * 8 7 2 10 10 N 1.34776 * 119.99658 * 179.71371 * 8 7 2 11 11 C 1.46500 * 119.99923 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47434 * 64.99688 * 12 11 10 14 14 C 1.52997 * 109.47114 * 184.99495 * 12 11 10 15 15 O 1.42903 * 109.47059 * 55.00009 * 14 12 11 16 16 N 1.46498 * 109.46963 * 304.99288 * 12 11 10 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 12 11 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 12 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 12 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00053 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00174 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47356 * 89.99148 * 25 23 21 27 27 H 1.48497 * 109.47342 * 209.99750 * 25 23 21 28 28 H 1.48505 * 109.46847 * 329.99403 * 25 23 21 29 29 H 1.08999 * 109.47184 * 270.11955 * 1 2 3 30 30 H 1.08998 * 109.47106 * 30.11969 * 1 2 3 31 31 H 1.09004 * 109.47166 * 150.11626 * 1 2 3 32 32 H 1.08003 * 125.41562 * 179.74732 * 4 3 2 33 33 H 0.96998 * 119.99957 * 0.02562 * 10 8 7 34 34 H 1.08995 * 109.47176 * 59.99567 * 11 10 8 35 35 H 1.09008 * 109.46559 * 299.99697 * 11 10 8 36 36 H 1.08997 * 109.47241 * 175.00015 * 14 12 11 37 37 H 1.09002 * 109.47280 * 295.00109 * 14 12 11 38 38 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 39 39 H 0.97001 * 120.00384 * 335.00737 * 16 12 11 40 40 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 41 41 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 42 42 H 0.97000 * 120.00636 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0060 5 7 3.6122 -0.6363 -0.0049 6 1 4.4189 -1.1749 -0.0088 7 6 2.3124 -1.1041 0.0022 8 6 1.8820 -2.5073 0.0055 9 8 0.6962 -2.7800 0.0118 10 7 2.8004 -3.4938 0.0016 11 6 2.3709 -4.8944 0.0043 12 6 3.6004 -5.8049 -0.0005 13 1 4.1550 -5.6715 0.9283 14 6 3.1545 -7.2633 -0.1233 15 8 2.3298 -7.4135 -1.2806 16 7 4.4592 -5.4596 -1.1360 17 6 5.7794 -5.7267 -1.0881 18 8 6.2556 -6.2575 -0.1070 19 6 6.6640 -5.3658 -2.2536 20 16 8.3699 -5.8484 -1.8885 21 6 9.1601 -5.3264 -3.3743 22 1 8.5813 -4.8640 -4.1601 23 6 10.5268 -5.5085 -3.5343 24 7 11.1173 -5.1181 -4.6440 25 14 11.5281 -6.3076 -2.1748 26 1 11.5592 -7.7778 -2.3817 27 1 12.9138 -5.7745 -2.2019 28 1 10.9073 -6.0058 -0.8600 29 1 -0.3633 0.0021 1.0276 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8911 -0.5120 32 1 4.3971 1.3744 -0.0113 33 1 3.7456 -3.2764 -0.0031 34 1 1.7688 -5.0915 -0.8826 35 1 1.7774 -5.0906 0.8974 36 1 4.0310 -7.9046 -0.2161 37 1 2.5895 -7.5465 0.7648 38 1 2.0096 -8.3151 -1.4211 39 1 4.0785 -5.0351 -1.9207 40 1 6.3215 -5.8901 -3.1457 41 1 6.6189 -4.2903 -2.4246 42 1 12.0724 -5.2457 -4.7561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680316764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:29 Heat of formation + Delta-G solvation = -69.448271 kcal Electronic energy + Delta-G solvation = -26908.494686 eV Core-core repulsion = 22822.755784 eV Total energy + Delta-G solvation = -4085.738902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55297 -40.18455 -39.29268 -37.44914 -35.72078 -34.12866 -33.30392 -32.53200 -31.62841 -30.92355 -28.72785 -27.70193 -26.01542 -25.70707 -23.26457 -22.05454 -21.43934 -20.59131 -20.10633 -19.18110 -18.08965 -17.77093 -16.94392 -16.61533 -16.45450 -16.07317 -15.64761 -15.38523 -15.06800 -14.97720 -14.74240 -14.53590 -14.13327 -14.04496 -13.83105 -13.45966 -13.22357 -13.02396 -12.92997 -12.84736 -12.60877 -12.36540 -12.01233 -11.67651 -11.36533 -11.09871 -10.79462 -10.72328 -10.38655 -10.35816 -10.18638 -9.95424 -9.73591 -9.55514 -9.25740 -9.09229 -8.81479 -8.62430 -7.03597 -6.37810 -4.10946 0.94516 2.48342 2.51110 2.57838 2.68658 2.78166 2.98508 3.16425 3.25260 3.40748 3.51609 3.93742 4.12800 4.22580 4.23955 4.43490 4.60483 4.70189 4.75912 4.89327 4.95499 5.01097 5.04025 5.12130 5.33608 5.35617 5.40424 5.55998 5.60608 5.65377 5.69290 5.77334 5.87743 5.94848 6.27588 6.29475 6.79964 6.99332 7.30712 7.39554 7.57150 7.75647 7.85031 8.25952 8.32775 9.07874 10.71395 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.002773 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.437008 B =10096.129333 C =12077.619386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.100 3.900 3 N -0.501 5.501 4 C 0.227 3.773 5 N -0.555 5.555 6 H 0.424 0.576 7 C -0.100 4.100 8 C 0.598 3.402 9 O -0.521 6.521 10 N -0.730 5.730 11 C 0.118 3.882 12 C 0.139 3.861 13 H 0.107 0.893 14 C 0.066 3.934 15 O -0.569 6.569 16 N -0.728 5.728 17 C 0.531 3.469 18 O -0.519 6.519 19 C -0.125 4.125 20 S -0.140 6.140 21 C -0.523 4.523 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.218 0.782 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.382 0.618 39 H 0.404 0.596 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 4.353 10.389 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.221 5.221 4 C -0.057 4.057 5 N -0.160 5.160 6 H 0.263 0.737 7 C -0.215 4.215 8 C 0.385 3.615 9 O -0.397 6.397 10 N -0.382 5.382 11 C -0.006 4.006 12 C 0.033 3.967 13 H 0.124 0.876 14 C -0.014 4.014 15 O -0.374 6.374 16 N -0.383 5.383 17 C 0.318 3.682 18 O -0.393 6.393 19 C -0.276 4.276 20 S 0.086 5.914 21 C -0.671 4.671 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.515 5.515 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.234 0.766 33 H 0.231 0.769 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.229 0.771 39 H 0.238 0.762 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.422 4.690 11.877 23.244 hybrid contribution 1.319 -1.078 -1.147 2.054 sum -18.103 3.612 10.730 21.351 Atomic orbital electron populations 1.20305 0.86464 1.03740 1.03055 1.21112 0.96951 0.86621 0.98780 1.70181 1.00487 1.30370 1.21076 1.25235 0.97462 0.82060 1.00992 1.43386 1.08033 1.08967 1.55574 0.73666 1.20866 0.84505 0.94925 1.21204 1.16782 0.85752 0.82563 0.76417 1.90830 1.15919 1.82914 1.50069 1.45878 1.09574 1.06462 1.76286 1.21627 0.96027 0.78519 1.04430 1.21272 0.90629 0.92990 0.91820 0.87554 1.22531 0.94443 0.96171 0.88214 1.86442 1.69643 1.34646 1.46699 1.46022 1.07581 1.64615 1.20105 1.20370 0.81654 0.77647 0.88559 1.90710 1.74029 1.41132 1.33435 1.23283 1.00067 1.05135 0.99074 1.84779 0.97706 1.81542 1.27329 1.22298 0.96504 1.46668 1.01629 0.89381 1.24720 0.96786 0.94137 0.95654 1.69931 1.11305 1.45141 1.25116 0.86734 0.80463 0.80617 0.83999 1.19188 1.19887 1.15995 0.90724 0.90979 0.89275 0.76591 0.76874 0.89126 0.89795 0.92016 0.92506 0.77110 0.76163 0.88357 0.88588 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.88 36.01 0.36 -0.41 16 2 C 0.10 1.13 7.15 -82.51 -0.59 0.54 16 3 N -0.50 -5.53 11.20 -10.64 -0.12 -5.65 16 4 C 0.23 1.75 13.01 -90.57 -1.18 0.57 16 5 N -0.55 -4.05 6.07 -10.79 -0.07 -4.12 16 6 H 0.42 1.98 8.32 -40.82 -0.34 1.65 16 7 C -0.10 -1.01 7.08 -82.14 -0.58 -1.59 16 8 C 0.60 6.40 7.79 -12.81 -0.10 6.30 16 9 O -0.52 -6.94 14.82 5.21 0.08 -6.86 16 10 N -0.73 -6.13 5.38 -61.59 -0.33 -6.46 16 11 C 0.12 0.99 5.12 -4.04 -0.02 0.97 16 12 C 0.14 1.26 2.53 -67.93 -0.17 1.09 16 13 H 0.11 1.03 7.57 -51.93 -0.39 0.64 16 14 C 0.07 0.57 6.85 37.16 0.25 0.82 16 15 O -0.57 -4.80 12.64 -35.23 -0.45 -5.24 16 16 N -0.73 -7.71 4.46 -53.81 -0.24 -7.95 16 17 C 0.53 8.05 7.82 -10.98 -0.09 7.96 16 18 O -0.52 -9.62 15.52 5.55 0.09 -9.54 16 19 C -0.13 -2.18 6.16 36.01 0.22 -1.96 16 20 S -0.14 -3.31 18.55 -107.50 -1.99 -5.31 16 21 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 22 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 23 C 0.10 2.72 5.50 -17.43 -0.10 2.62 16 24 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16 25 Si 0.86 20.99 27.74 -169.99 -4.72 16.27 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.93 6.49 -51.93 -0.34 0.60 16 32 H 0.22 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.40 2.84 7.38 -40.82 -0.30 2.54 16 34 H 0.09 0.88 7.39 -51.93 -0.38 0.49 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 1.79 9.12 45.56 0.42 2.20 16 39 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 40 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -37.01 376.48 -7.63 -44.63 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.65 Total: 6.82 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.68 Total: 2.76 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.02 Total: -49.22 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.28 Total: -21.64 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.72 Total: 16.27 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -1.99 Total: -5.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.01 -7.63 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680316764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.814 kcal (2) G-P(sol) polarization free energy of solvation -37.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds