Wall clock time and date at job start Wed Apr 1 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28821 * 2 1 4 4 O 1.21302 * 110.25077 * 179.68089 * 3 2 1 5 5 C 1.33638 * 109.81083 * 0.47168 * 4 3 2 6 6 C 1.50703 * 126.55347 * 179.80252 * 5 4 3 7 7 N 1.46897 * 109.46834 * 269.68484 * 6 5 4 8 8 C 1.47962 * 111.00037 * 169.99844 * 7 6 5 9 9 C 1.53935 * 86.30001 * 222.47236 * 8 7 6 10 10 O 1.42900 * 113.73067 * 269.30150 * 9 8 7 11 11 C 1.53005 * 113.73242 * 138.02883 * 9 8 7 12 12 N 1.46501 * 109.46814 * 185.00070 * 11 9 8 13 13 C 1.34775 * 119.99588 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00600 * 359.97438 * 13 12 11 15 15 C 1.50708 * 119.99960 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47184 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99876 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99773 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00164 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46809 * 60.00075 * 21 19 17 23 23 H 1.48500 * 109.46892 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47177 * 300.00245 * 21 19 17 25 25 C 1.48187 * 111.07743 * 70.70783 * 7 6 5 26 26 N 1.31132 * 106.89635 * 359.53390 * 5 4 3 27 27 H 1.09001 * 109.46838 * 270.03104 * 1 2 3 28 28 H 1.08999 * 109.46639 * 30.02499 * 1 2 3 29 29 H 1.08997 * 109.47285 * 150.02874 * 1 2 3 30 30 H 1.08999 * 109.47078 * 149.68455 * 6 5 4 31 31 H 1.08999 * 109.46664 * 29.67865 * 6 5 4 32 32 H 1.09002 * 113.76087 * 108.09701 * 8 7 6 33 33 H 1.09005 * 113.75858 * 336.84163 * 8 7 6 34 34 H 0.96701 * 114.00009 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.46437 * 304.99256 * 11 9 8 36 36 H 1.08988 * 109.47427 * 64.99327 * 11 9 8 37 37 H 0.96997 * 120.00340 * 359.97438 * 12 11 9 38 38 H 1.08995 * 109.46894 * 299.99784 * 15 13 12 39 39 H 1.09001 * 109.46843 * 59.99916 * 15 13 12 40 40 H 0.96999 * 119.99713 * 180.02562 * 20 19 17 41 41 H 1.09005 * 113.65869 * 23.13541 * 25 7 6 42 42 H 1.09002 * 113.92722 * 251.82174 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5299 -0.6211 0.0008 6 6 4.7970 -1.4370 0.0014 7 7 5.2091 -1.7024 -1.3834 8 6 6.5659 -2.2908 -1.4293 9 6 6.8267 -1.3468 -2.6170 10 8 6.5118 -1.9204 -3.8874 11 6 8.2052 -0.6837 -2.5853 12 7 8.3091 0.2794 -3.6844 13 6 9.4428 0.9880 -3.8545 14 8 10.3769 0.8288 -3.0975 15 6 9.5500 1.9783 -4.9854 16 16 11.1801 2.7639 -4.9471 17 6 11.0337 3.8404 -6.3343 18 1 10.1196 3.8591 -6.9091 19 6 12.0931 4.6643 -6.6882 20 7 13.2074 4.6412 -5.9879 21 14 11.9381 5.8050 -8.1594 22 1 10.8100 6.7455 -7.9398 23 1 13.1979 6.5738 -8.3245 24 1 11.6830 5.0031 -9.3829 25 6 5.7031 -0.4683 -2.0382 26 7 2.3030 -1.0841 0.0006 27 1 -0.3633 0.0006 1.0277 28 1 -0.3632 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 4.6204 -2.3819 0.5154 31 1 5.5841 -0.8853 0.5153 32 1 6.5776 -3.3473 -1.6972 33 1 7.1711 -2.0683 -0.5504 34 1 6.6739 -1.3305 -4.6363 35 1 8.3376 -0.1663 -1.6352 36 1 8.9773 -1.4451 -2.6951 37 1 7.5620 0.4070 -4.2897 38 1 9.4181 1.4605 -5.9354 39 1 8.7775 2.7395 -4.8762 40 1 13.9476 5.2172 -6.2350 41 1 6.0544 0.2885 -1.3367 42 1 5.0265 -0.0670 -2.7928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699907758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:54 Heat of formation + Delta-G solvation = 29.880636 kcal Electronic energy + Delta-G solvation = -26439.865156 eV Core-core repulsion = 22358.433479 eV Total energy + Delta-G solvation = -4081.431677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.97941 -41.13457 -39.11824 -36.66266 -36.35453 -34.24176 -33.83449 -32.46390 -30.93425 -29.79842 -29.31533 -27.11384 -26.82036 -25.50753 -24.29548 -23.34041 -21.60683 -20.64270 -20.41909 -18.58919 -18.25404 -17.82286 -17.28054 -16.66050 -16.57357 -16.11261 -15.72929 -15.41748 -15.16561 -14.83476 -14.54796 -14.14849 -14.09373 -14.02445 -13.73473 -13.70138 -13.20919 -13.19486 -12.89304 -12.69250 -12.61449 -12.51125 -12.07689 -11.92476 -11.77960 -11.40961 -11.28901 -11.08574 -11.06390 -10.80028 -10.47983 -10.26019 -9.87135 -9.60852 -9.44523 -9.13640 -9.07193 -8.30006 -6.55067 -6.25202 -3.96522 0.69744 1.80130 2.29840 2.85574 2.94964 3.13002 3.17477 3.21339 3.23929 3.27105 3.53274 3.59933 3.62186 3.86556 4.13378 4.16875 4.31575 4.48830 4.54379 4.69424 4.82959 4.92742 4.98656 5.01838 5.02581 5.10068 5.14852 5.20501 5.26473 5.41067 5.46421 5.47001 5.54702 5.61589 5.66855 5.80565 6.05828 6.18637 6.35374 7.13978 7.46532 7.55933 7.76608 8.31296 8.44499 9.20123 10.82108 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.001946 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.488246 B =14382.847184 C =15410.512358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.383 5.383 4 O 0.078 5.922 5 C 0.189 3.811 6 C 0.109 3.891 7 N -0.461 5.461 8 C 0.026 3.974 9 C 0.099 3.901 10 O -0.524 6.524 11 C 0.102 3.898 12 N -0.741 5.741 13 C 0.535 3.465 14 O -0.513 6.513 15 C -0.155 4.155 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.030 4.030 26 N -0.466 5.466 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.380 0.620 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.395 0.605 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.089 0.911 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.983 -13.912 12.081 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.091 5.091 4 O 0.020 5.980 5 C -0.033 4.033 6 C -0.020 4.020 7 N -0.185 5.185 8 C -0.103 4.103 9 C 0.056 3.944 10 O -0.329 6.329 11 C -0.023 4.023 12 N -0.397 5.397 13 C 0.321 3.679 14 O -0.386 6.386 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.159 4.159 26 N -0.201 5.201 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.144 0.856 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.603 -14.464 13.505 29.297 hybrid contribution -0.715 1.929 -1.989 2.862 sum -22.318 -12.534 11.516 28.068 Atomic orbital electron populations 1.20152 0.82822 1.04821 1.04323 1.25972 1.00720 0.83445 1.00542 1.74669 0.89317 1.23875 1.21214 1.85308 1.22518 1.24728 1.65464 1.28443 0.96767 0.82027 0.96065 1.21214 0.88187 0.98571 0.94048 1.68846 1.23123 1.15038 1.11466 1.24131 0.88298 1.01899 0.95932 1.22783 0.91864 0.93517 0.86187 1.86579 1.88551 1.43584 1.14232 1.21893 0.96104 0.92474 0.91828 1.45914 1.17740 1.43172 1.32891 1.20332 0.81403 0.80491 0.85647 1.90717 1.37262 1.65384 1.45237 1.23541 1.08235 1.00143 0.98601 1.85405 1.08566 1.48374 1.40873 1.22818 1.03726 1.26471 1.15519 0.90935 1.24995 0.94460 0.96728 0.97367 1.70003 1.03883 1.37807 1.38544 0.86219 0.77690 0.80032 0.81543 1.19931 1.20791 1.19906 1.24954 0.97448 0.93434 1.00024 1.71899 0.99621 1.29246 1.19307 0.89278 0.89426 0.88920 0.85612 0.89797 0.87097 0.88669 0.77082 0.90227 0.90058 0.77102 0.89068 0.89118 0.92083 0.89267 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.17 1.65 8.22 -156.38 -1.28 0.36 16 3 N -0.38 -4.30 12.16 30.90 0.38 -3.93 16 4 O 0.08 0.81 11.31 18.11 0.20 1.01 16 5 C 0.19 1.70 7.55 -13.06 -0.10 1.60 16 6 C 0.11 0.64 5.45 -4.98 -0.03 0.62 16 7 N -0.46 -3.37 6.26 -238.70 -1.49 -4.86 16 8 C 0.03 0.15 7.37 -2.77 -0.02 0.13 16 9 C 0.10 0.73 1.52 -89.68 -0.14 0.59 16 10 O -0.52 -4.48 13.51 -35.23 -0.48 -4.96 16 11 C 0.10 0.95 5.28 -4.04 -0.02 0.93 16 12 N -0.74 -8.19 5.32 -60.29 -0.32 -8.51 16 13 C 0.53 9.06 7.85 -10.98 -0.09 8.97 16 14 O -0.51 -10.85 15.86 5.56 0.09 -10.76 16 15 C -0.15 -2.92 6.16 36.01 0.22 -2.69 16 16 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 17 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 21 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.03 -0.21 6.89 -2.65 -0.02 -0.23 16 26 N -0.47 -4.88 11.55 -9.87 -0.11 -4.99 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.30 7.69 -51.93 -0.40 -0.10 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.34 7.75 -51.93 -0.40 -0.06 16 34 H 0.38 2.28 7.58 45.56 0.35 2.63 16 35 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 36 H 0.08 0.85 8.14 -51.94 -0.42 0.42 16 37 H 0.39 3.17 7.31 -40.82 -0.30 2.87 16 38 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 39 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -37.55 377.86 -8.36 -45.91 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.92 Total: 0.54 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.90 Total: -2.41 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.82 Total: -47.32 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.18 Total: -14.71 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.55 -8.36 -45.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699907758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.786 kcal (2) G-P(sol) polarization free energy of solvation -37.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds