Wall clock time and date at job start Wed Apr 1 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28821 * 2 1 4 4 O 1.21302 * 110.25077 * 179.68089 * 3 2 1 5 5 C 1.33638 * 109.81083 * 0.47168 * 4 3 2 6 6 C 1.50703 * 126.55347 * 179.80252 * 5 4 3 7 7 N 1.46897 * 109.46834 * 269.68484 * 6 5 4 8 8 C 1.47962 * 111.00037 * 169.99844 * 7 6 5 9 9 C 1.53935 * 86.30001 * 222.47236 * 8 7 6 10 10 O 1.42900 * 113.73067 * 269.30150 * 9 8 7 11 11 C 1.53005 * 113.73242 * 138.02883 * 9 8 7 12 12 N 1.46501 * 109.46814 * 185.00070 * 11 9 8 13 13 C 1.34775 * 119.99588 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00600 * 359.97438 * 13 12 11 15 15 C 1.50708 * 119.99960 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47184 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99876 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99773 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00164 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46809 * 60.00075 * 21 19 17 23 23 H 1.48500 * 109.46892 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47177 * 300.00245 * 21 19 17 25 25 C 1.48187 * 111.07743 * 70.70783 * 7 6 5 26 26 N 1.31132 * 106.89635 * 359.53390 * 5 4 3 27 27 H 1.09001 * 109.46838 * 270.03104 * 1 2 3 28 28 H 1.08999 * 109.46639 * 30.02499 * 1 2 3 29 29 H 1.08997 * 109.47285 * 150.02874 * 1 2 3 30 30 H 1.08999 * 109.47078 * 149.68455 * 6 5 4 31 31 H 1.08999 * 109.46664 * 29.67865 * 6 5 4 32 32 H 1.09002 * 113.76087 * 108.09701 * 8 7 6 33 33 H 1.09005 * 113.75858 * 336.84163 * 8 7 6 34 34 H 0.96701 * 114.00009 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.46437 * 304.99256 * 11 9 8 36 36 H 1.08988 * 109.47427 * 64.99327 * 11 9 8 37 37 H 0.96997 * 120.00340 * 359.97438 * 12 11 9 38 38 H 1.08995 * 109.46894 * 299.99784 * 15 13 12 39 39 H 1.09001 * 109.46843 * 59.99916 * 15 13 12 40 40 H 0.96999 * 119.99713 * 180.02562 * 20 19 17 41 41 H 1.09005 * 113.65869 * 23.13541 * 25 7 6 42 42 H 1.09002 * 113.92722 * 251.82174 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5299 -0.6211 0.0008 6 6 4.7970 -1.4370 0.0014 7 7 5.2091 -1.7024 -1.3834 8 6 6.5659 -2.2908 -1.4293 9 6 6.8267 -1.3468 -2.6170 10 8 6.5118 -1.9204 -3.8874 11 6 8.2052 -0.6837 -2.5853 12 7 8.3091 0.2794 -3.6844 13 6 9.4428 0.9880 -3.8545 14 8 10.3769 0.8288 -3.0975 15 6 9.5500 1.9783 -4.9854 16 16 11.1801 2.7639 -4.9471 17 6 11.0337 3.8404 -6.3343 18 1 10.1196 3.8591 -6.9091 19 6 12.0931 4.6643 -6.6882 20 7 13.2074 4.6412 -5.9879 21 14 11.9381 5.8050 -8.1594 22 1 10.8100 6.7455 -7.9398 23 1 13.1979 6.5738 -8.3245 24 1 11.6830 5.0031 -9.3829 25 6 5.7031 -0.4683 -2.0382 26 7 2.3030 -1.0841 0.0006 27 1 -0.3633 0.0006 1.0277 28 1 -0.3632 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 4.6204 -2.3819 0.5154 31 1 5.5841 -0.8853 0.5153 32 1 6.5776 -3.3473 -1.6972 33 1 7.1711 -2.0683 -0.5504 34 1 6.6739 -1.3305 -4.6363 35 1 8.3376 -0.1663 -1.6352 36 1 8.9773 -1.4451 -2.6951 37 1 7.5620 0.4070 -4.2897 38 1 9.4181 1.4605 -5.9354 39 1 8.7775 2.7395 -4.8762 40 1 13.9476 5.2172 -6.2350 41 1 6.0544 0.2885 -1.3367 42 1 5.0265 -0.0670 -2.7928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699907758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:52 Heat of formation + Delta-G solvation = -4.532979 kcal Electronic energy + Delta-G solvation = -26441.357442 eV Core-core repulsion = 22358.433479 eV Total energy + Delta-G solvation = -4082.923963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.69227 -41.76059 -40.36769 -37.36128 -37.04878 -35.29897 -34.57416 -34.49524 -31.84498 -30.74232 -30.03762 -28.05914 -27.54505 -27.34418 -25.01988 -24.02722 -22.22156 -21.86809 -21.00563 -19.94955 -19.30678 -18.61434 -18.35491 -17.71509 -17.31625 -16.87404 -16.86094 -16.61950 -16.34124 -16.15986 -15.68932 -15.23718 -14.87882 -14.71246 -14.54591 -14.50563 -14.25475 -14.22480 -13.86433 -13.56620 -13.34842 -13.19219 -13.16266 -13.02088 -12.86140 -12.66120 -12.61673 -12.45440 -12.12516 -11.93558 -11.71842 -11.13583 -11.12314 -10.99969 -10.89768 -10.27060 -10.22196 -9.94460 -8.65260 -8.34019 -6.11563 0.01459 1.11035 1.27025 1.44094 1.46947 1.56303 1.59932 1.69539 2.18372 2.28536 2.58162 2.63146 3.00162 3.00512 3.05309 3.22738 3.32581 3.54375 3.77045 3.88855 4.02565 4.08170 4.21290 4.30991 4.37937 4.45094 4.52030 4.53138 4.53907 4.60888 4.66018 4.67333 4.79441 4.86394 4.88311 5.04276 5.09976 5.31334 5.42628 5.72037 6.20253 6.38553 6.63401 7.07299 7.07582 7.19854 8.74695 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.001946 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.488246 B =14382.847184 C =15410.512358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.160 3.840 3 N -0.411 5.411 4 O 0.067 5.933 5 C 0.194 3.806 6 C 0.109 3.891 7 N -0.478 5.478 8 C 0.032 3.968 9 C 0.106 3.894 10 O -0.538 6.538 11 C 0.104 3.896 12 N -0.713 5.713 13 C 0.539 3.461 14 O -0.561 6.561 15 C -0.132 4.132 16 S -0.150 6.150 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.996 3.004 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.262 1.262 25 C -0.028 4.028 26 N -0.491 5.491 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.141 0.859 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.389 0.611 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.098 0.902 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.892 -14.449 11.704 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.122 5.122 4 O 0.012 5.988 5 C -0.027 4.027 6 C -0.020 4.020 7 N -0.203 5.203 8 C -0.096 4.096 9 C 0.063 3.937 10 O -0.346 6.346 11 C -0.020 4.020 12 N -0.369 5.369 13 C 0.325 3.675 14 O -0.438 6.438 15 C -0.283 4.283 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.818 3.182 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.157 4.157 26 N -0.226 5.226 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.159 0.841 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.239 0.761 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.560 -15.031 13.115 30.871 hybrid contribution -0.237 1.970 -1.823 2.694 sum -23.797 -13.062 11.292 29.401 Atomic orbital electron populations 1.20345 0.80553 1.05644 1.05602 1.26667 1.02200 0.83061 0.99347 1.74654 0.89811 1.24823 1.22893 1.85267 1.22310 1.25376 1.65863 1.29076 0.97478 0.81752 0.94415 1.21483 0.87541 0.99264 0.93744 1.68820 1.24008 1.15051 1.12394 1.24243 0.87821 1.01487 0.96084 1.22744 0.90428 0.94065 0.86418 1.86575 1.88590 1.44404 1.14988 1.22032 0.97232 0.91708 0.91069 1.45590 1.16313 1.41741 1.33240 1.19976 0.82276 0.80605 0.84671 1.90708 1.39332 1.67028 1.46762 1.23391 1.03435 1.00827 1.00686 1.85558 1.15367 1.49825 1.41525 1.23176 1.04232 1.26508 1.15570 0.89891 1.26105 0.93954 0.98490 1.00585 1.70171 1.04872 1.38993 1.40636 0.85034 0.77935 0.77714 0.77514 1.18745 1.20497 1.18668 1.24936 0.96986 0.93685 1.00060 1.71924 1.00392 1.29761 1.20509 0.87675 0.88637 0.87994 0.84089 0.87098 0.87120 0.85968 0.76059 0.89685 0.90854 0.74993 0.87035 0.87175 0.92020 0.88412 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.07 16 2 C 0.16 3.06 8.22 138.46 1.14 4.20 16 3 N -0.41 -9.07 12.16 -60.32 -0.73 -9.80 16 4 O 0.07 1.34 11.31 74.87 0.85 2.19 16 5 C 0.19 3.24 7.55 88.38 0.67 3.90 16 6 C 0.11 1.01 5.45 85.56 0.47 1.48 16 7 N -0.48 -5.88 6.26 -911.95 -5.71 -11.58 16 8 C 0.03 0.29 7.37 86.41 0.64 0.92 16 9 C 0.11 1.32 1.52 -10.15 -0.02 1.30 16 10 O -0.54 -8.11 13.51 -148.98 -2.01 -10.12 16 11 C 0.10 1.72 5.28 86.38 0.46 2.18 16 12 N -0.71 -14.33 5.32 -463.06 -2.46 -16.79 16 13 C 0.54 17.72 7.85 87.66 0.69 18.41 16 14 O -0.56 -23.87 15.86 -3.02 -0.05 -23.92 16 15 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 16 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 17 C -0.55 -30.54 9.50 67.95 0.65 -29.90 16 18 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 21 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 C -0.03 -0.34 6.89 86.36 0.59 0.25 16 26 N -0.49 -9.80 11.55 -303.20 -3.50 -13.30 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.44 7.69 -2.39 -0.02 0.42 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 0.44 7.75 -2.38 -0.02 0.42 16 34 H 0.39 3.83 7.58 -74.06 -0.56 3.27 16 35 H 0.08 1.40 8.04 -2.39 -0.02 1.38 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 5.52 7.31 -92.71 -0.68 4.84 16 38 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 39 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.10 1.03 7.67 -2.38 -0.02 1.02 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -83.95 377.86 -5.70 -89.65 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -0.16 Total: 13.17 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.93 Total: -0.36 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -12.12 Total: -106.38 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.21 Total: -31.85 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -83.95 -5.70 -89.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699907758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.115 kcal (2) G-P(sol) polarization free energy of solvation -83.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds