Wall clock time and date at job start Wed Apr 1 2020 00:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48500 * 109.46834 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47398 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.47231 * 60.00469 * 3 2 1 7 7 C 1.38798 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99620 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46974 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99972 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 174.93230 * 13 11 10 15 15 C 1.52997 * 112.94189 * 295.51995 * 14 13 11 16 16 C 1.53006 * 109.46816 * 303.82331 * 15 14 13 17 17 O 1.42901 * 109.46780 * 179.97438 * 16 15 14 18 18 C 1.53937 * 113.73175 * 163.94532 * 14 13 11 19 19 N 1.48295 * 86.06460 * 269.31274 * 18 14 13 20 20 C 1.46898 * 111.00412 * 222.42243 * 19 18 14 21 21 C 1.50705 * 109.46895 * 289.34837 * 20 19 18 22 22 C 1.40903 * 125.30104 * 94.72164 * 21 20 19 23 23 N 1.29953 * 109.38975 * 179.79947 * 22 21 20 24 24 O 1.41881 * 107.41426 * 0.44496 * 23 22 21 25 25 N 1.29946 * 125.30841 * 275.02597 * 21 20 19 26 26 C 1.47961 * 90.75707 * 335.30770 * 19 18 14 27 27 H 0.96999 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46754 * 59.99896 * 10 9 7 29 29 H 1.08997 * 109.47216 * 300.00465 * 10 9 7 30 30 H 0.96998 * 119.99603 * 354.93835 * 13 11 10 31 31 H 1.08996 * 109.47239 * 63.82115 * 15 14 13 32 32 H 1.08998 * 109.46912 * 183.82641 * 15 14 13 33 33 H 1.09001 * 109.47141 * 299.96484 * 16 15 14 34 34 H 1.08996 * 109.47197 * 59.96423 * 16 15 14 35 35 H 0.96706 * 113.99395 * 179.97438 * 17 16 15 36 36 H 1.09000 * 113.75894 * 23.68983 * 18 14 13 37 37 H 1.08999 * 113.75468 * 155.04679 * 18 14 13 38 38 H 1.08995 * 109.47460 * 49.34818 * 20 19 18 39 39 H 1.09000 * 109.47313 * 169.35144 * 20 19 18 40 40 H 1.07997 * 125.30399 * 0.02562 * 22 21 20 41 41 H 1.08999 * 113.76528 * 270.37499 * 26 19 18 42 42 H 1.09004 * 113.86078 * 139.01481 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3432 -0.0008 14 6 2.3340 -7.7120 0.1107 15 6 1.6447 -7.9844 1.4491 16 6 2.6114 -7.6728 2.5934 17 8 1.9673 -7.9267 3.8435 18 6 3.3583 -8.7892 -0.2894 19 7 2.8002 -8.6663 -1.6578 20 6 2.6322 -9.9870 -2.2786 21 6 3.9855 -10.5660 -2.6015 22 6 4.7120 -11.4474 -1.7764 23 7 5.8339 -11.7548 -2.3557 24 8 5.8765 -11.0621 -3.5932 25 7 4.6669 -10.3260 -3.6816 26 6 1.5177 -8.1704 -1.1113 27 1 -0.4850 0.8400 0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7314 -0.8904 30 1 3.7983 -6.1856 -0.0742 31 1 0.7609 -7.3527 1.5379 32 1 1.3488 -9.0323 1.4987 33 1 3.4949 -8.3050 2.5050 34 1 2.9078 -6.6251 2.5434 35 1 2.5230 -7.7505 4.6151 36 1 4.3948 -8.4627 -0.2050 37 1 3.1780 -9.7598 0.1728 38 1 2.1090 -10.6489 -1.5886 39 1 2.0519 -9.8862 -3.1958 40 1 4.3855 -11.8135 -0.8142 41 1 0.8003 -8.9602 -0.8889 42 1 1.0831 -7.3496 -1.6821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700501331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:07 Heat of formation + Delta-G solvation = 51.887537 kcal Electronic energy + Delta-G solvation = -27144.596945 eV Core-core repulsion = 23064.119558 eV Total energy + Delta-G solvation = -4080.477386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98096 -41.09856 -38.55078 -37.06382 -35.02253 -33.59302 -33.10465 -32.44580 -31.71658 -29.42033 -28.70638 -26.81473 -25.53902 -25.18215 -23.80514 -22.40169 -21.32540 -20.97691 -19.34595 -17.93936 -17.83066 -17.55766 -16.85099 -16.37763 -16.30598 -15.96082 -15.58947 -15.34989 -15.24417 -14.82252 -14.68144 -14.61605 -14.23551 -13.91175 -13.52134 -13.29844 -13.00979 -12.67479 -12.45676 -12.43897 -12.21074 -12.18461 -11.95470 -11.77048 -11.62730 -11.58112 -11.10717 -11.07991 -11.04093 -10.86636 -10.76740 -10.14853 -9.82819 -9.46279 -9.39062 -9.09452 -8.95318 -8.26105 -6.51923 -6.23808 -3.94175 0.07039 1.47274 2.19404 2.67413 2.87630 2.98371 3.20414 3.24315 3.28527 3.31072 3.49889 3.63065 3.75449 3.95281 4.16713 4.18556 4.34893 4.54040 4.66208 4.75860 4.84463 4.93728 4.96262 4.99744 5.02738 5.10200 5.11746 5.15781 5.31254 5.39514 5.55717 5.64068 5.73705 5.80480 5.85531 6.05262 6.11286 6.33911 6.45235 6.56547 7.43528 7.57950 7.60776 8.33528 8.52974 9.22003 10.83618 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.002461 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.614836 B =11375.217215 C =12546.095458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.538 3.462 12 O -0.509 6.509 13 N -0.714 5.714 14 C 0.164 3.836 15 C -0.123 4.123 16 C 0.081 3.919 17 O -0.574 6.574 18 C -0.007 4.007 19 N -0.466 5.466 20 C 0.081 3.919 21 C 0.076 3.924 22 C 0.052 3.948 23 N -0.272 5.272 24 O 0.025 5.975 25 N -0.248 5.248 26 C 0.010 3.990 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.402 0.598 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.379 0.621 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.211 0.789 41 H 0.085 0.915 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.100 -24.440 2.240 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.325 3.675 12 O -0.383 6.383 13 N -0.369 5.369 14 C 0.075 3.925 15 C -0.162 4.162 16 C 0.003 3.997 17 O -0.379 6.379 18 C -0.136 4.136 19 N -0.189 5.189 20 C -0.048 4.048 21 C -0.108 4.108 22 C -0.152 4.152 23 N -0.015 5.015 24 O -0.118 6.118 25 N 0.008 4.992 26 C -0.119 4.119 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.237 0.763 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.226 0.774 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.227 0.773 41 H 0.103 0.897 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.863 -24.503 0.327 25.448 hybrid contribution 2.011 0.947 1.366 2.609 sum 8.874 -23.556 1.693 25.229 Atomic orbital electron populations 1.70024 1.05935 1.27364 1.46941 1.24991 0.95030 0.99041 0.94533 0.86121 0.79594 0.81898 0.77913 1.19625 1.20553 1.20572 1.22901 0.94922 0.91647 1.58845 0.90914 1.85380 1.04717 0.96298 1.96710 1.23533 1.06701 0.95279 1.04916 1.20281 0.86507 0.86014 0.74739 1.90695 1.15203 1.85440 1.46945 1.45649 1.10267 1.03700 1.77294 1.21385 0.94143 0.83076 0.93914 1.21784 1.00256 1.02915 0.91230 1.22048 0.94305 0.99508 0.83802 1.86474 1.44672 1.91023 1.15726 1.24553 1.00631 0.98656 0.89727 1.68862 1.15505 1.18575 1.15978 1.21349 0.88547 0.91935 1.02978 1.24518 0.99262 0.95796 0.91202 1.26079 0.91098 0.95723 1.02256 1.79925 1.16923 1.10634 0.93978 1.93441 1.33106 1.53408 1.31816 1.80042 0.92982 1.08281 1.17900 1.24397 0.91511 1.00945 0.95024 0.92229 0.89320 0.89203 0.76304 0.88705 0.90442 0.94162 0.93203 0.77427 0.88598 0.89440 0.90213 0.87193 0.77273 0.89679 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 11 C 0.54 8.98 7.41 -10.99 -0.08 8.90 16 12 O -0.51 -10.23 13.85 5.55 0.08 -10.16 16 13 N -0.71 -8.17 4.58 -48.69 -0.22 -8.39 16 14 C 0.16 1.49 0.61 -133.51 -0.08 1.41 16 15 C -0.12 -1.22 4.86 -26.73 -0.13 -1.35 16 16 C 0.08 0.75 6.82 37.16 0.25 1.01 16 17 O -0.57 -5.92 13.66 -35.23 -0.48 -6.41 16 18 C -0.01 -0.04 6.44 -2.57 -0.02 -0.06 16 19 N -0.47 -3.68 6.26 -239.24 -1.50 -5.18 16 20 C 0.08 0.46 5.37 -4.97 -0.03 0.43 16 21 C 0.08 0.55 6.26 -82.38 -0.52 0.03 16 22 C 0.05 0.29 11.76 -17.34 -0.20 0.08 16 23 N -0.27 -2.48 12.98 30.70 0.40 -2.08 16 24 O 0.02 0.29 13.71 12.02 0.16 0.45 16 25 N -0.25 -2.68 12.98 33.74 0.44 -2.24 16 26 C 0.01 0.09 6.86 -2.76 -0.02 0.07 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.40 3.73 8.66 -40.82 -0.35 3.38 16 31 H 0.09 1.32 7.05 -51.93 -0.37 0.95 16 32 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.04 0.27 7.98 -51.93 -0.41 -0.15 16 34 H 0.05 0.53 7.69 -51.93 -0.40 0.13 16 35 H 0.38 2.24 9.12 45.56 0.42 2.66 16 36 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.09 0.28 7.72 -51.93 -0.40 -0.12 16 38 H 0.08 0.20 7.69 -51.93 -0.40 -0.20 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.21 0.17 8.06 -52.49 -0.42 -0.25 16 41 H 0.09 0.59 7.75 -51.93 -0.40 0.18 16 42 H 0.11 1.39 7.42 -51.93 -0.39 1.00 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -37.27 376.09 -7.14 -44.41 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.78 Total: 1.46 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.40 Total: -4.88 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.15 Total: -43.01 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.24 Total: -16.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.27 -7.14 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700501331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.293 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds