Wall clock time and date at job start Wed Apr 1 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30859 * 125.42255 * 2 1 4 4 C 1.33316 * 109.68797 * 179.78660 * 3 2 1 5 5 C 1.36660 * 107.78494 * 0.37329 * 4 3 2 6 6 C 1.46768 * 126.84076 * 179.89498 * 5 4 3 7 7 O 1.21682 * 120.00199 * 359.69540 * 6 5 4 8 8 N 1.34775 * 119.99845 * 179.68460 * 6 5 4 9 9 C 1.46502 * 119.99947 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46925 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.47216 * 295.00133 * 10 9 8 12 12 C 1.52999 * 109.47083 * 175.00128 * 10 9 8 13 13 O 1.42898 * 109.47018 * 305.00136 * 12 10 9 14 14 N 1.46498 * 109.47065 * 55.00022 * 10 9 8 15 15 C 1.34777 * 119.99828 * 204.72115 * 14 10 9 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 10 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 10 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 N 1.34501 * 125.41756 * 180.02562 * 2 1 3 28 28 H 0.96995 * 126.47791 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47248 * 269.97410 * 1 2 3 30 30 H 1.08998 * 109.47099 * 29.97669 * 1 2 3 31 31 H 1.09004 * 109.47350 * 149.97862 * 1 2 3 32 32 H 1.08005 * 126.10258 * 180.27589 * 4 3 2 33 33 H 0.96997 * 119.99994 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.46993 * 60.00870 * 9 8 6 35 35 H 1.08999 * 109.47017 * 300.00291 * 9 8 6 36 36 H 1.09003 * 109.47083 * 65.00130 * 12 10 9 37 37 H 1.08995 * 109.47300 * 184.99893 * 12 10 9 38 38 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 39 39 H 0.97001 * 120.00384 * 25.00562 * 14 10 9 40 40 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 41 41 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 42 42 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 3.5975 -0.6609 -0.0007 6 6 4.8029 -1.4983 -0.0005 7 8 5.9038 -0.9800 -0.0008 8 7 4.6903 -2.8413 0.0001 9 6 5.8934 -3.6772 -0.0002 10 6 5.4891 -5.1529 0.0000 11 1 4.9746 -5.3885 0.9315 12 6 6.7403 -6.0245 -0.1261 13 8 7.4766 -5.6356 -1.2873 14 7 4.5956 -5.4146 -1.1311 15 6 3.7306 -6.4469 -1.0816 16 8 3.6883 -7.1561 -0.0987 17 6 2.8158 -6.7200 -2.2477 18 16 1.7823 -8.1597 -1.8796 19 6 0.8402 -8.2480 -3.3659 20 1 1.0058 -7.5282 -4.1539 21 6 -0.1141 -9.2433 -3.5245 22 7 -0.3156 -10.1210 -2.5644 23 14 -1.1135 -9.3366 -5.0999 24 1 -0.1999 -9.5282 -6.2549 25 1 -2.0578 -10.4799 -5.0202 26 1 -1.8774 -8.0756 -5.2770 27 7 2.2864 -1.0961 -0.0005 28 1 1.9850 -2.0180 -0.0013 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 4.3978 1.3722 0.0100 33 1 3.8127 -3.2544 0.0001 34 1 6.4854 -3.4623 0.8893 35 1 6.4844 -3.4629 -0.8906 36 1 7.3633 -5.8960 0.7591 37 1 6.4470 -7.0704 -0.2152 38 1 8.2848 -6.1471 -1.4302 39 1 4.6295 -4.8474 -1.9173 40 1 2.1801 -5.8519 -2.4218 41 1 3.4119 -6.9184 -3.1384 42 1 -0.9828 -10.8163 -2.6751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701675303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:27 Heat of formation + Delta-G solvation = -70.620498 kcal Electronic energy + Delta-G solvation = -26761.701042 eV Core-core repulsion = 22675.911309 eV Total energy + Delta-G solvation = -4085.789733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55685 -40.12451 -39.24100 -37.37159 -35.64213 -33.93081 -32.95072 -32.52025 -32.24508 -30.94568 -28.64936 -27.87911 -26.06204 -25.57195 -23.05080 -21.91673 -21.21833 -20.66268 -20.47007 -19.05366 -18.03398 -17.71610 -16.89716 -16.48676 -16.32060 -16.08554 -15.65336 -15.26266 -15.08415 -14.88661 -14.54908 -14.30741 -14.13647 -14.07461 -13.83045 -13.63572 -13.32938 -13.13442 -12.92163 -12.81845 -12.56779 -12.45878 -11.90827 -11.61848 -11.14035 -11.11139 -10.85258 -10.79982 -10.53626 -10.36679 -10.26637 -9.92346 -9.63473 -9.50450 -9.18113 -9.12041 -8.81168 -8.36461 -6.61444 -6.30905 -4.02619 0.94648 2.44841 2.47099 2.67836 2.83235 2.92121 3.04042 3.16802 3.20847 3.23414 3.54638 3.98605 3.99991 4.11723 4.28356 4.41849 4.66597 4.79549 4.93130 4.95974 5.03017 5.04589 5.09793 5.12601 5.19105 5.34441 5.45271 5.46115 5.50411 5.52132 5.73367 5.74032 5.92561 6.00991 6.21135 6.38842 6.78323 7.01216 7.35722 7.49347 7.51156 7.57092 7.76273 8.25743 8.39126 9.14651 10.76378 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.002957 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.378941 B = 9465.953826 C =12091.554932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.245 3.755 3 N -0.497 5.497 4 C 0.075 3.925 5 C -0.096 4.096 6 C 0.598 3.402 7 O -0.525 6.525 8 N -0.729 5.729 9 C 0.117 3.883 10 C 0.139 3.861 11 H 0.107 0.893 12 C 0.066 3.934 13 O -0.569 6.569 14 N -0.730 5.730 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.538 4.538 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.274 1.274 27 N -0.551 5.551 28 H 0.423 0.577 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.184 0.816 33 H 0.398 0.602 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.381 0.619 39 H 0.402 0.598 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.910 16.346 5.605 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 N -0.217 5.217 4 C -0.079 4.079 5 C -0.211 4.211 6 C 0.385 3.615 7 O -0.401 6.401 8 N -0.381 5.381 9 C -0.006 4.006 10 C 0.033 3.967 11 H 0.124 0.876 12 C -0.014 4.014 13 O -0.375 6.375 14 N -0.385 5.385 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.169 5.831 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.157 5.157 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.201 0.799 33 H 0.232 0.768 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.228 0.772 39 H 0.237 0.763 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.801 16.585 7.270 20.134 hybrid contribution -0.326 -1.052 -2.462 2.697 sum 8.475 15.533 4.809 18.336 Atomic orbital electron populations 1.20366 0.84002 1.04928 1.04308 1.23544 0.96029 0.81424 1.00903 1.70235 1.02078 1.28192 1.21241 1.22676 0.94825 0.91155 0.99292 1.21102 0.83665 0.96032 1.20331 1.16809 0.87077 0.81260 0.76404 1.90865 1.25845 1.73194 1.50156 1.45885 1.10296 1.05820 1.76072 1.21637 0.86988 0.87604 1.04403 1.21256 0.90255 0.93141 0.92073 0.87556 1.22542 0.92185 0.98612 0.88057 1.86439 1.40944 1.63658 1.46430 1.46067 1.39056 1.33318 1.20106 1.20397 0.79715 0.79326 0.88656 1.90713 1.68559 1.46485 1.33306 1.23540 1.01279 1.06793 0.98871 1.85375 1.42220 1.30331 1.25204 1.22821 1.24328 1.18342 1.03160 0.90971 1.24988 0.96391 0.94566 0.97517 1.69997 1.32757 1.15345 1.32151 0.86226 0.79439 0.77903 0.81967 1.19885 1.20754 1.19913 1.43301 1.06050 1.10455 1.55857 0.73793 0.89382 0.88525 0.89983 0.79865 0.76806 0.89798 0.89170 0.92542 0.91941 0.77158 0.76346 0.89371 0.89084 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.24 2.19 8.12 -155.61 -1.26 0.93 16 3 N -0.50 -5.67 11.20 -10.58 -0.12 -5.79 16 4 C 0.07 0.83 11.66 -17.48 -0.20 0.63 16 5 C -0.10 -0.99 7.08 -82.14 -0.58 -1.57 16 6 C 0.60 6.67 7.79 -12.81 -0.10 6.57 16 7 O -0.52 -7.47 16.90 5.20 0.09 -7.38 16 8 N -0.73 -6.52 5.38 -61.59 -0.33 -6.85 16 9 C 0.12 1.06 5.12 -4.04 -0.02 1.04 16 10 C 0.14 1.36 2.53 -67.93 -0.17 1.19 16 11 H 0.11 1.11 7.58 -51.93 -0.39 0.72 16 12 C 0.07 0.61 6.84 37.16 0.25 0.86 16 13 O -0.57 -5.13 12.64 -35.23 -0.45 -5.58 16 14 N -0.73 -8.30 4.46 -53.81 -0.24 -8.54 16 15 C 0.53 8.62 7.81 -10.98 -0.09 8.53 16 16 O -0.52 -10.23 15.53 5.55 0.09 -10.14 16 17 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 18 S -0.06 -1.47 20.57 -107.50 -2.21 -3.69 16 19 C -0.54 -14.70 9.50 30.94 0.29 -14.41 16 20 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.29 13.22 55.49 0.73 -24.56 16 23 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 N -0.55 -4.48 6.07 -7.02 -0.04 -4.52 16 28 H 0.42 2.41 8.32 -40.82 -0.34 2.07 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.18 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.40 3.08 7.38 -40.82 -0.30 2.78 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.93 7.39 -51.93 -0.38 0.54 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.38 1.99 9.12 45.56 0.42 2.40 16 39 H 0.40 4.03 8.60 -40.82 -0.35 3.68 16 40 H 0.09 1.46 8.14 -51.92 -0.42 1.03 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -37.06 383.16 -7.81 -44.86 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.70 Total: 7.65 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.37 Total: 3.09 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.00 Total: -50.26 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.27 Total: -23.10 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.06 -7.81 -44.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701675303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.757 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds