Wall clock time and date at job start Wed Apr 1 2020 01:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 N 1.46507 * 109.47105 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00147 * 270.00378 * 14 13 12 16 16 C 1.34781 * 119.99609 * 90.00479 * 14 13 12 17 17 O 1.21284 * 119.99987 * 0.02562 * 16 14 13 18 18 C 1.50698 * 119.99579 * 180.02562 * 16 14 13 19 19 S 1.81006 * 109.46920 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99842 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99820 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99612 * 179.97438 * 20 19 18 23 23 N 1.31637 * 120.00237 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99736 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47547 * 60.00175 * 24 22 20 26 26 H 1.48503 * 109.47115 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47088 * 299.99753 * 24 22 20 28 28 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 29 29 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 30 30 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 31 31 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 32 32 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 34 34 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 35 35 H 1.09000 * 109.47466 * 300.00208 * 13 12 11 36 36 H 1.09005 * 109.46783 * 60.00399 * 13 12 11 37 37 H 1.09005 * 109.47032 * 89.99998 * 15 14 13 38 38 H 1.08997 * 109.47134 * 209.99825 * 15 14 13 39 39 H 1.09000 * 109.47241 * 330.00374 * 15 14 13 40 40 H 1.08996 * 109.46879 * 299.99788 * 18 16 14 41 41 H 1.09000 * 109.46905 * 60.00089 * 18 16 14 42 42 H 0.96993 * 120.00069 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 7 3.1595 -7.2050 0.0370 15 6 2.9448 -7.8979 1.3097 16 6 2.9596 -7.8553 -1.1265 17 8 3.1379 -7.2817 -2.1802 18 6 2.5146 -9.2950 -1.1181 19 16 2.3344 -9.8807 -2.8213 20 6 1.8222 -11.5398 -2.5217 21 1 1.7115 -11.8960 -1.5082 22 6 1.5601 -12.3884 -3.5883 23 7 1.6945 -11.9539 -4.8237 24 14 1.0165 -14.1471 -3.2708 25 1 -0.2509 -14.1414 -2.4970 26 1 0.8029 -14.8407 -4.5663 27 1 2.0659 -14.8575 -2.4966 28 1 -0.3633 0.0054 1.0278 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5091 31 1 4.9238 1.7853 -0.8929 32 1 3.7415 -3.2769 0.0162 33 1 1.7659 -5.0834 0.9164 34 1 1.7653 -5.0927 -0.8636 35 1 4.1891 -5.6141 -0.8626 36 1 4.1904 -5.6049 0.9174 37 1 1.9095 -7.7667 1.6247 38 1 3.1547 -8.9602 1.1850 39 1 3.6102 -7.4824 2.0665 40 1 3.2580 -9.9020 -0.6016 41 1 1.5574 -9.3764 -0.6031 42 1 1.5117 -12.5471 -5.5690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704216987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:44 Heat of formation + Delta-G solvation = -45.965963 kcal Electronic energy + Delta-G solvation = -26135.971329 eV Core-core repulsion = 22051.250697 eV Total energy + Delta-G solvation = -4084.720632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.74277 -39.96402 -39.37702 -37.93296 -36.13308 -34.90107 -33.66257 -32.45827 -31.38004 -30.63848 -28.61851 -27.38871 -26.38361 -25.51167 -23.79396 -22.94354 -21.62837 -20.55174 -19.97357 -19.25923 -18.29073 -17.74287 -16.88118 -16.84432 -16.65585 -16.08327 -15.77769 -15.41664 -15.28412 -14.83046 -14.61801 -14.37773 -13.94422 -13.70560 -13.57001 -13.33072 -13.04114 -12.97905 -12.80157 -12.61223 -12.51566 -12.41232 -12.38784 -11.93193 -11.57660 -11.07919 -11.06137 -10.82888 -10.79546 -10.56130 -10.31686 -9.85491 -9.54411 -9.51216 -9.08815 -8.83656 -8.76738 -8.28112 -6.54450 -6.24513 -3.95850 0.68290 1.85252 2.20056 2.44261 2.89889 2.91197 3.01845 3.21463 3.24368 3.27319 3.32788 3.55901 4.17203 4.24427 4.43607 4.55979 4.61772 4.74886 4.98104 4.99015 5.06299 5.10576 5.15089 5.33935 5.48613 5.51196 5.59305 5.60392 5.63949 5.67820 5.73953 5.83281 5.89685 6.06997 6.07662 6.16053 6.45216 6.89776 7.04993 7.32657 7.34029 7.56273 7.74776 8.31844 8.40372 9.20635 10.82840 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.001770 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.879605 B =15814.257744 C =16002.136435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.118 3.882 3 N -0.488 5.488 4 C 0.414 3.586 5 O -0.441 6.441 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.085 4.085 9 C 0.597 3.403 10 O -0.513 6.513 11 N -0.725 5.725 12 C 0.104 3.896 13 C 0.109 3.891 14 N -0.622 5.622 15 C 0.079 3.921 16 C 0.534 3.466 17 O -0.511 6.511 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.409 0.591 32 H 0.393 0.607 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 22.060 14.296 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.017 4.017 3 N -0.219 5.219 4 C 0.113 3.887 5 O -0.243 6.243 6 N -0.175 5.175 7 H 0.261 0.739 8 C -0.199 4.199 9 C 0.384 3.616 10 O -0.388 6.388 11 N -0.377 5.377 12 C -0.021 4.021 13 C -0.016 4.016 14 N -0.359 5.359 15 C -0.064 4.064 16 C 0.322 3.678 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.267 0.733 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.847 23.469 13.132 27.522 hybrid contribution 1.064 -2.624 1.054 3.021 sum 6.911 20.846 14.186 26.145 Atomic orbital electron populations 1.20390 0.85717 1.04242 1.03510 1.21006 0.97018 0.85775 0.97858 1.70326 0.98570 1.30327 1.22672 1.20188 0.87463 0.78631 1.02432 1.84834 1.43247 1.61557 1.34648 1.43698 1.08722 1.07952 1.57159 0.73869 1.20777 0.82987 0.95150 1.21001 1.16604 0.85920 0.82265 0.76846 1.90885 1.15709 1.82666 1.49586 1.45710 1.09148 1.06638 1.76237 1.21851 0.98028 0.78475 1.03740 1.21444 0.95380 0.81138 1.03602 1.47741 1.70293 1.10955 1.06924 1.21836 1.01455 0.98420 0.84686 1.20442 0.76114 0.88519 0.82726 1.90708 1.49158 1.68361 1.30255 1.23562 1.03871 0.94127 1.08535 1.85407 1.88656 1.12120 0.97268 1.22808 1.53302 0.96856 0.95474 0.90941 1.24996 0.94926 0.99218 0.94426 1.70005 1.45694 1.36417 0.98126 0.86218 0.79164 0.82364 0.77722 1.19896 1.20795 1.19946 0.90278 0.90649 0.88714 0.73257 0.77341 0.90817 0.90105 0.89210 0.90277 0.92469 0.90302 0.91293 0.89113 0.89052 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.87 36.01 0.36 -0.40 16 2 C 0.12 1.26 7.14 -82.53 -0.59 0.67 16 3 N -0.49 -5.24 11.22 -10.83 -0.12 -5.37 16 4 C 0.41 3.31 9.43 -89.60 -0.84 2.46 16 5 O -0.44 -2.35 13.62 -17.30 -0.24 -2.59 16 6 N -0.56 -3.55 6.12 -10.91 -0.07 -3.62 16 7 H 0.42 1.20 8.32 -40.82 -0.34 0.86 16 8 C -0.08 -0.81 7.08 -81.97 -0.58 -1.39 16 9 C 0.60 6.47 7.78 -12.98 -0.10 6.37 16 10 O -0.51 -7.31 14.80 5.16 0.08 -7.23 16 11 N -0.73 -6.09 5.55 -61.71 -0.34 -6.43 16 12 C 0.10 1.08 6.00 -4.04 -0.02 1.06 16 13 C 0.11 1.04 5.56 -4.04 -0.02 1.02 16 14 N -0.62 -7.73 2.87 -181.57 -0.52 -8.25 16 15 C 0.08 0.71 10.29 59.85 0.62 1.32 16 16 C 0.53 9.50 7.69 -10.98 -0.08 9.41 16 17 O -0.51 -11.01 15.44 5.55 0.09 -10.93 16 18 C -0.15 -2.93 4.71 36.00 0.17 -2.76 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 24 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.98 6.46 -51.93 -0.34 0.65 16 31 H 0.41 0.05 9.06 45.56 0.41 0.46 16 32 H 0.39 1.96 7.71 -40.82 -0.31 1.65 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 36 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.73 6.44 -51.93 -0.33 0.39 16 39 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 40 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 41 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -39.27 378.37 -7.41 -46.68 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.58 Total: -0.10 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.91 Total: 5.02 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.32 Total: -48.84 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.07 Total: -20.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.27 -7.41 -46.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704216987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.714 kcal (2) G-P(sol) polarization free energy of solvation -39.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds