Wall clock time and date at job start Wed Apr 1 2020 01:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 N 1.46507 * 109.47105 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00147 * 270.00378 * 14 13 12 16 16 C 1.34781 * 119.99609 * 90.00479 * 14 13 12 17 17 O 1.21284 * 119.99987 * 0.02562 * 16 14 13 18 18 C 1.50698 * 119.99579 * 180.02562 * 16 14 13 19 19 S 1.81006 * 109.46920 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99842 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99820 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99612 * 179.97438 * 20 19 18 23 23 N 1.31637 * 120.00237 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99736 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47547 * 60.00175 * 24 22 20 26 26 H 1.48503 * 109.47115 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47088 * 299.99753 * 24 22 20 28 28 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 29 29 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 30 30 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 31 31 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 32 32 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 34 34 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 35 35 H 1.09000 * 109.47466 * 300.00208 * 13 12 11 36 36 H 1.09005 * 109.46783 * 60.00399 * 13 12 11 37 37 H 1.09005 * 109.47032 * 89.99998 * 15 14 13 38 38 H 1.08997 * 109.47134 * 209.99825 * 15 14 13 39 39 H 1.09000 * 109.47241 * 330.00374 * 15 14 13 40 40 H 1.08996 * 109.46879 * 299.99788 * 18 16 14 41 41 H 1.09000 * 109.46905 * 60.00089 * 18 16 14 42 42 H 0.96993 * 120.00069 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 7 3.1595 -7.2050 0.0370 15 6 2.9448 -7.8979 1.3097 16 6 2.9596 -7.8553 -1.1265 17 8 3.1379 -7.2817 -2.1802 18 6 2.5146 -9.2950 -1.1181 19 16 2.3344 -9.8807 -2.8213 20 6 1.8222 -11.5398 -2.5217 21 1 1.7115 -11.8960 -1.5082 22 6 1.5601 -12.3884 -3.5883 23 7 1.6945 -11.9539 -4.8237 24 14 1.0165 -14.1471 -3.2708 25 1 -0.2509 -14.1414 -2.4970 26 1 0.8029 -14.8407 -4.5663 27 1 2.0659 -14.8575 -2.4966 28 1 -0.3633 0.0054 1.0278 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5091 31 1 4.9238 1.7853 -0.8929 32 1 3.7415 -3.2769 0.0162 33 1 1.7659 -5.0834 0.9164 34 1 1.7653 -5.0927 -0.8636 35 1 4.1891 -5.6141 -0.8626 36 1 4.1904 -5.6049 0.9174 37 1 1.9095 -7.7667 1.6247 38 1 3.1547 -8.9602 1.1850 39 1 3.6102 -7.4824 2.0665 40 1 3.2580 -9.9020 -0.6016 41 1 1.5574 -9.3764 -0.6031 42 1 1.5117 -12.5471 -5.5690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704216987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:43 Heat of formation + Delta-G solvation = -81.195500 kcal Electronic energy + Delta-G solvation = -26137.498997 eV Core-core repulsion = 22051.250697 eV Total energy + Delta-G solvation = -4086.248300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.40479 -41.04069 -40.40992 -38.42689 -37.21244 -35.87002 -34.58500 -34.35771 -32.25091 -31.63849 -29.79371 -28.15753 -27.69447 -27.21884 -24.65732 -23.68873 -22.38423 -21.35661 -20.75107 -20.33001 -19.54975 -18.93892 -18.10450 -17.60371 -17.54355 -16.99940 -16.87599 -16.68734 -16.57317 -16.25022 -15.74866 -15.31057 -15.26968 -14.69592 -14.43581 -14.32590 -14.28479 -14.21518 -13.63881 -13.57861 -13.38309 -13.24712 -13.16228 -13.08084 -13.07715 -12.86363 -12.65833 -12.38562 -11.73865 -11.58672 -11.23669 -11.15617 -11.12884 -10.93419 -10.39137 -10.27553 -9.81773 -9.53085 -8.67642 -8.34702 -6.13083 -0.00907 1.21987 1.27071 1.42455 1.43910 1.50336 1.53894 1.55452 1.79646 2.09384 2.26539 2.32213 2.78520 2.99416 3.26002 3.63049 3.68165 3.74636 3.88904 4.01516 4.04101 4.21020 4.28824 4.38425 4.41303 4.49359 4.69587 4.72276 4.79519 4.85058 4.91362 4.92963 4.97802 5.12022 5.41421 5.41959 5.52081 5.76951 6.18085 6.20249 6.23725 6.62657 6.65619 6.96468 7.06473 7.09662 8.74194 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.001770 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.879605 B =15814.257744 C =16002.136435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.101 3.899 3 N -0.522 5.522 4 C 0.428 3.572 5 O -0.441 6.441 6 N -0.537 5.537 7 H 0.440 0.560 8 C -0.091 4.091 9 C 0.597 3.403 10 O -0.554 6.554 11 N -0.708 5.708 12 C 0.113 3.887 13 C 0.111 3.889 14 N -0.608 5.608 15 C 0.069 3.931 16 C 0.531 3.469 17 O -0.561 6.561 18 C -0.125 4.125 19 S -0.155 6.155 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.263 1.263 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.433 0.567 32 H 0.413 0.587 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 21.967 17.142 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.254 5.254 4 C 0.126 3.874 5 O -0.246 6.246 6 N -0.157 5.157 7 H 0.283 0.717 8 C -0.207 4.207 9 C 0.384 3.616 10 O -0.432 6.432 11 N -0.361 5.361 12 C -0.012 4.012 13 C -0.012 4.012 14 N -0.342 5.342 15 C -0.073 4.073 16 C 0.319 3.681 17 O -0.438 6.438 18 C -0.276 4.276 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.296 0.704 32 H 0.249 0.751 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.436 23.392 16.026 29.315 hybrid contribution 0.691 -2.419 0.276 2.531 sum 8.128 20.974 16.302 27.780 Atomic orbital electron populations 1.20342 0.85702 1.03834 1.03702 1.21213 0.97561 0.86350 0.98278 1.70286 0.99879 1.30842 1.24355 1.20207 0.87454 0.79236 1.00500 1.84808 1.42054 1.60883 1.36841 1.43485 1.08388 1.07660 1.56210 0.71725 1.20453 0.84122 0.94148 1.21930 1.16772 0.85574 0.83001 0.76207 1.90867 1.17480 1.83326 1.51549 1.45474 1.09966 1.05466 1.75191 1.21617 0.98083 0.79589 1.01912 1.21649 0.95051 0.79045 1.05490 1.47699 1.68146 1.11954 1.06442 1.22182 1.03234 0.98362 0.83515 1.20181 0.76262 0.87933 0.83752 1.90692 1.51697 1.69042 1.32407 1.23388 1.05420 0.95763 1.03022 1.85583 1.89051 1.13300 1.04841 1.23163 1.53067 0.96969 0.96149 0.89810 1.26137 0.94749 1.04317 0.94011 1.70178 1.47041 1.38263 0.99291 0.85008 0.79189 0.76015 0.77822 1.18718 1.20500 1.18496 0.89816 0.89879 0.90171 0.70392 0.75056 0.90303 0.94406 0.90406 0.85156 0.91490 0.90481 0.87292 0.87016 0.87601 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.87 71.24 0.70 -0.82 16 2 C 0.10 2.13 7.14 41.99 0.30 2.43 16 3 N -0.52 -10.78 11.22 -301.67 -3.39 -14.16 16 4 C 0.43 6.02 9.43 179.99 1.70 7.72 16 5 O -0.44 -3.54 13.62 -84.83 -1.16 -4.70 16 6 N -0.54 -5.75 6.12 -300.14 -1.84 -7.58 16 7 H 0.44 1.21 8.32 -92.70 -0.77 0.43 16 8 C -0.09 -1.66 7.08 39.80 0.28 -1.38 16 9 C 0.60 12.71 7.78 86.36 0.67 13.38 16 10 O -0.55 -16.23 14.80 -4.45 -0.07 -16.30 16 11 N -0.71 -10.84 5.55 -467.34 -2.59 -13.43 16 12 C 0.11 2.23 6.00 86.38 0.52 2.75 16 13 C 0.11 1.84 5.56 86.38 0.48 2.32 16 14 N -0.61 -13.72 2.87 -846.74 -2.43 -16.16 16 15 C 0.07 0.96 10.29 127.77 1.31 2.28 16 16 C 0.53 18.72 7.69 87.66 0.67 19.40 16 17 O -0.56 -24.89 15.44 -3.04 -0.05 -24.94 16 18 C -0.12 -4.81 4.71 71.24 0.34 -4.47 16 19 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 20 C -0.55 -30.83 9.50 67.95 0.65 -30.19 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 24 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 28 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.79 6.46 -2.39 -0.02 1.77 16 31 H 0.43 -1.13 9.06 -74.06 -0.67 -1.81 16 32 H 0.41 3.01 7.71 -92.71 -0.72 2.29 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.08 1.56 7.42 -2.39 -0.02 1.54 16 36 H 0.13 0.93 7.89 -2.38 -0.02 0.91 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.08 1.15 6.44 -2.39 -0.02 1.14 16 39 H 0.11 0.73 7.89 -2.39 -0.02 0.72 16 40 H 0.11 3.80 7.40 -2.40 -0.02 3.79 16 41 H 0.11 3.74 8.11 -2.40 -0.02 3.72 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -90.70 378.37 -3.33 -94.03 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -1.05 Total: 8.64 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 8.09 Total: 14.61 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -9.96 Total: -106.88 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.27 Total: -45.93 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -90.70 -3.33 -94.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704216987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.838 kcal (2) G-P(sol) polarization free energy of solvation -90.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds