Wall clock time and date at job start Wed Apr 1 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47661 * 2 1 4 4 C 1.53000 * 109.46931 * 120.00218 * 2 1 3 5 5 H 1.08997 * 109.47777 * 59.99500 * 4 2 1 6 6 C 1.52997 * 109.47458 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.47555 * 174.99834 * 6 4 2 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 4 9 9 O 1.21503 * 119.99892 * 359.97438 * 8 7 6 10 10 C 1.48276 * 119.99730 * 180.27192 * 8 7 6 11 11 C 1.47494 * 128.70994 * 179.71853 * 10 8 7 12 12 N 1.30649 * 102.71811 * 179.97438 * 11 10 8 13 13 O 1.20834 * 109.61668 * 0.02562 * 12 11 10 14 14 N 1.20905 * 115.90984 * 359.73159 * 13 12 11 15 15 N 1.46504 * 109.46808 * 299.99721 * 4 2 1 16 16 C 1.34770 * 120.00145 * 85.00210 * 15 4 2 17 17 O 1.21279 * 120.00059 * 359.97438 * 16 15 4 18 18 C 1.50700 * 120.00235 * 180.02562 * 16 15 4 19 19 S 1.81000 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99921 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00050 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99951 * 179.97438 * 20 19 18 23 23 N 1.31640 * 120.00071 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00300 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47053 * 89.99740 * 24 22 20 26 26 H 1.48493 * 109.47621 * 209.99936 * 24 22 20 27 27 H 1.48500 * 109.46969 * 330.00128 * 24 22 20 28 28 H 1.09003 * 109.46502 * 59.99946 * 1 2 3 29 29 H 1.08992 * 109.47450 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46988 * 300.00486 * 1 2 3 31 31 H 1.09006 * 109.47094 * 239.99544 * 2 1 3 32 32 H 1.08994 * 109.47181 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46543 * 299.99796 * 3 2 1 34 34 H 1.08998 * 109.46908 * 59.99656 * 3 2 1 35 35 H 1.08998 * 109.47382 * 54.99395 * 6 4 2 36 36 H 1.09002 * 109.47216 * 294.99832 * 6 4 2 37 37 H 0.97001 * 120.00074 * 359.97438 * 7 6 4 38 38 H 1.07999 * 128.64052 * 359.94910 * 11 10 8 39 39 H 0.97003 * 120.00175 * 265.00009 * 15 4 2 40 40 H 1.09003 * 109.46971 * 299.99725 * 18 16 15 41 41 H 1.08997 * 109.47424 * 59.99838 * 18 16 15 42 42 H 0.96994 * 119.99934 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 3.5699 -0.7208 1.2497 7 7 4.0581 -1.3046 2.5015 8 6 5.3832 -1.4078 2.7252 9 8 6.1728 -1.0171 1.8885 10 6 5.8773 -2.0041 3.9897 11 6 7.2698 -2.2148 4.4279 12 7 7.1212 -2.7663 5.6029 13 8 5.9443 -2.8799 5.8519 14 7 5.1835 -2.4739 5.0044 15 7 1.5516 -0.0306 2.4454 16 6 0.3296 -0.3164 2.9369 17 8 -0.3659 -1.1449 2.3887 18 6 -0.1730 0.3945 4.1670 19 16 -1.8325 -0.2029 4.5734 20 6 -2.1640 0.7662 6.0070 21 1 -1.4256 1.4671 6.3676 22 6 -3.3740 0.6289 6.6730 23 7 -3.6215 1.3526 7.7444 24 14 -4.6513 -0.5829 6.0490 25 1 -4.4331 -1.9052 6.6885 26 1 -6.0100 -0.0879 6.3868 27 1 -4.5263 -0.7190 4.5755 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4423 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9330 0.3030 1.1603 36 1 3.9337 -1.3100 0.4079 37 1 3.4278 -1.6161 3.1697 38 1 8.1845 -1.9735 3.9069 39 1 2.1077 0.6324 2.8837 40 1 0.4995 0.1960 5.0015 41 1 -0.2097 1.4672 3.9772 42 1 -4.4672 1.2568 8.2096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704868324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:01 Heat of formation + Delta-G solvation = 39.562664 kcal Electronic energy + Delta-G solvation = -27250.861123 eV Core-core repulsion = 23169.849290 eV Total energy + Delta-G solvation = -4081.011833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.35074 -40.62297 -39.70252 -37.14284 -35.32487 -34.92933 -34.62527 -33.12584 -32.46825 -30.06630 -28.74229 -27.20370 -26.34637 -25.63803 -24.56718 -23.35929 -21.47163 -20.97046 -19.79836 -19.45477 -19.08028 -18.17529 -17.79670 -16.81406 -16.72934 -16.17488 -15.74270 -15.66156 -15.24320 -14.98679 -14.56618 -14.40812 -14.01928 -14.00028 -13.44972 -13.24680 -13.19212 -12.87297 -12.81960 -12.39816 -12.34938 -12.07079 -11.79933 -11.73124 -11.51289 -11.30165 -11.24757 -11.04106 -10.99253 -10.91727 -10.86852 -10.61776 -9.89910 -9.75228 -9.56040 -9.09986 -9.02472 -8.55094 -6.95818 -6.32017 -4.04229 0.28291 0.88166 2.09932 2.41916 2.67783 2.84689 2.94195 3.03728 3.22172 3.30602 3.46582 3.46997 3.59098 4.15445 4.28845 4.29679 4.36724 4.62511 4.68534 4.68899 4.86715 4.87201 5.06209 5.07122 5.15235 5.18849 5.41434 5.54447 5.63642 5.67709 5.71445 5.77535 5.89527 5.94813 5.99456 6.14570 6.40635 6.47727 6.74511 7.39387 7.45247 7.90944 7.96132 8.37346 8.38643 9.14003 10.77280 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.003063 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.396732 B = 9138.548687 C =11413.330657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.152 4.152 4 C 0.139 3.861 5 H 0.098 0.902 6 C 0.108 3.892 7 N -0.707 5.707 8 C 0.609 3.391 9 O -0.514 6.514 10 C -0.048 4.048 11 C 0.038 3.962 12 N -0.352 5.352 13 O 0.348 5.652 14 N -0.314 5.314 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.509 6.509 18 C -0.126 4.126 19 S -0.138 6.138 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.413 0.587 38 H 0.228 0.772 39 H 0.399 0.601 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.647 -4.166 -13.295 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.209 4.209 4 C 0.034 3.966 5 H 0.116 0.884 6 C -0.015 4.015 7 N -0.360 5.360 8 C 0.391 3.609 9 O -0.387 6.387 10 C -0.213 4.213 11 C -0.148 4.148 12 N -0.075 5.075 13 O 0.120 5.880 14 N -0.032 5.032 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.277 4.277 19 S 0.088 5.912 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.234 0.766 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.455 -5.673 -13.695 24.459 hybrid contribution 0.501 1.185 0.433 1.358 sum 19.956 -4.487 -13.263 24.378 Atomic orbital electron populations 1.21870 0.93293 1.02958 1.01665 1.21459 0.97643 0.96465 0.96577 1.21925 1.00530 0.95994 1.02477 1.21249 0.90889 0.98493 0.86011 0.88380 1.21960 0.93398 1.00182 0.85943 1.45846 1.06203 1.62288 1.21663 1.16412 0.82880 0.78633 0.82986 1.90858 1.55380 1.48323 1.44180 1.26210 0.91475 1.05967 0.97681 1.27755 0.98889 0.97430 0.90722 1.75109 0.99120 1.16493 1.16769 1.85135 1.09261 1.56828 1.36799 1.75468 1.19751 1.09075 0.98946 1.46064 1.18596 1.44585 1.29698 1.20221 0.80553 0.82444 0.84848 1.90720 1.55245 1.32738 1.59545 1.23294 1.03411 1.03427 0.97543 1.84770 1.12412 1.56677 1.37333 1.22309 1.06538 1.26712 1.11448 0.89435 1.24715 0.97411 0.95302 0.93854 1.69939 1.24767 1.39219 1.17706 0.86737 0.81176 0.81691 0.82248 1.19193 1.19952 1.15940 0.93416 0.91687 0.91999 0.90317 0.92580 0.92421 0.92214 0.89541 0.89231 0.75005 0.75567 0.76640 0.88587 0.88572 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.72 37.16 0.29 -1.36 16 2 C -0.10 -0.87 2.80 -90.62 -0.25 -1.12 16 3 C -0.15 -1.16 8.69 37.16 0.32 -0.84 16 4 C 0.14 1.21 2.16 -67.93 -0.15 1.06 16 5 H 0.10 1.01 7.58 -51.93 -0.39 0.61 16 6 C 0.11 0.77 5.01 -4.04 -0.02 0.75 16 7 N -0.71 -5.68 5.39 -61.11 -0.33 -6.01 16 8 C 0.61 5.61 7.85 -12.13 -0.10 5.52 16 9 O -0.51 -5.76 17.05 5.36 0.09 -5.67 16 10 C -0.05 -0.42 7.56 -80.07 -0.61 -1.02 16 11 C 0.04 0.27 12.63 -14.28 -0.18 0.09 16 12 N -0.35 -3.01 12.22 30.71 0.38 -2.64 16 13 O 0.35 3.22 11.65 27.27 0.32 3.53 16 14 N -0.31 -3.00 12.13 33.49 0.41 -2.60 16 15 N -0.73 -7.46 3.64 -53.81 -0.20 -7.65 16 16 C 0.53 8.07 6.20 -10.99 -0.07 8.00 16 17 O -0.51 -9.34 12.98 5.56 0.07 -9.27 16 18 C -0.13 -2.24 6.16 36.01 0.22 -2.02 16 19 S -0.14 -3.33 18.55 -107.50 -1.99 -5.33 16 20 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 21 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.25 13.97 55.49 0.78 -25.47 16 24 Si 0.86 21.40 27.74 -169.99 -4.72 16.68 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.86 7.53 -51.93 -0.39 0.47 16 30 H 0.06 0.88 5.77 -51.93 -0.30 0.58 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.36 6.32 -51.93 -0.33 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.51 7.60 -51.93 -0.39 0.11 16 35 H 0.09 0.58 6.17 -51.93 -0.32 0.26 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 3.44 7.99 -40.82 -0.33 3.12 16 38 H 0.23 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.40 3.30 8.60 -40.82 -0.35 2.95 16 40 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -33.43 369.41 -5.29 -38.72 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.34 Total: 2.80 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.32 Total: -2.67 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 1.03 Total: -44.37 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.48 Total: -11.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.68 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.43 -5.29 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704868324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.282 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds