Wall clock time and date at job start Wed Apr 1 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47106 * 270.00104 * 3 2 1 5 5 H 1.48498 * 109.47314 * 30.00334 * 3 2 1 6 6 H 1.48506 * 109.46942 * 149.99901 * 3 2 1 7 7 C 1.38802 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00231 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00010 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47160 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00026 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99816 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47175 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.46550 * 304.99711 * 15 14 13 17 17 O 1.42898 * 109.47113 * 64.99921 * 15 14 13 18 18 C 1.52996 * 109.46972 * 185.00138 * 15 14 13 19 19 N 1.46500 * 109.46993 * 179.97438 * 18 15 14 20 20 C 1.34779 * 120.00169 * 180.02562 * 19 18 15 21 21 O 1.21282 * 119.99922 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 179.97438 * 20 19 18 23 23 N 1.46506 * 109.46928 * 179.97438 * 22 20 19 24 24 C 1.34944 * 126.03372 * 124.99978 * 23 22 20 25 25 C 1.35317 * 107.74658 * 179.97438 * 24 23 22 26 26 C 1.39871 * 107.91935 * 0.02562 * 25 24 23 27 27 N 1.30845 * 108.20108 * 359.74200 * 26 25 24 28 28 H 0.96997 * 120.00035 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47215 * 59.99585 * 10 9 7 30 30 H 1.09008 * 109.46927 * 299.99950 * 10 9 7 31 31 H 0.97001 * 119.99797 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.47384 * 59.99847 * 14 13 11 33 33 H 1.08999 * 109.47238 * 300.00245 * 14 13 11 34 34 H 0.96701 * 113.99881 * 60.00537 * 17 15 14 35 35 H 1.09004 * 109.47298 * 59.99824 * 18 15 14 36 36 H 1.09004 * 109.47552 * 299.99695 * 18 15 14 37 37 H 0.96996 * 119.99986 * 359.97438 * 19 18 15 38 38 H 1.09004 * 109.47103 * 59.99751 * 22 20 19 39 39 H 1.09000 * 109.47247 * 299.99628 * 22 20 19 40 40 H 1.08005 * 126.12990 * 359.96230 * 24 23 22 41 41 H 1.08002 * 126.04160 * 179.97438 * 25 24 23 42 42 H 1.07995 * 125.90070 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2964 -0.0003 13 7 6.0456 -4.4948 0.0010 14 6 7.4906 -4.7359 0.0005 15 6 7.7563 -6.2427 0.0009 16 1 7.2392 -6.7025 0.8430 17 8 7.2778 -6.8110 -1.2198 18 6 9.2600 -6.4953 0.1262 19 7 9.5144 -7.9381 0.1271 20 6 10.7765 -8.3998 0.2292 21 8 11.7017 -7.6209 0.3198 22 6 11.0380 -9.8839 0.2308 23 7 12.4780 -10.1259 0.3506 24 6 13.0798 -10.8867 1.2887 25 6 14.4120 -10.8543 1.0537 26 6 14.6319 -10.0455 -0.0660 27 7 13.4728 -9.6125 -0.4914 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8895 30 1 3.6440 -3.4314 0.8905 31 1 5.4290 -5.2436 0.0011 32 1 7.9340 -4.2882 0.8899 33 1 7.9332 -4.2895 -0.8900 34 1 7.6953 -6.4479 -2.0129 35 1 9.6250 -6.0618 1.0573 36 1 9.7772 -6.0354 -0.7160 37 1 8.7744 -8.5610 0.0551 38 1 10.6732 -10.3182 -0.7001 39 1 10.5208 -10.3432 1.0732 40 1 12.5865 -11.4249 2.0846 41 1 15.1713 -11.3624 1.6296 42 1 15.5922 -9.8205 -0.5059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704925677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:24 Heat of formation + Delta-G solvation = -37.764695 kcal Electronic energy + Delta-G solvation = -25413.503987 eV Core-core repulsion = 21329.138989 eV Total energy + Delta-G solvation = -4084.364999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59697 -40.20703 -39.46651 -38.07923 -34.90140 -34.34676 -33.82156 -32.46401 -31.12073 -30.46537 -29.43481 -27.92783 -25.72340 -25.33195 -22.50173 -21.96682 -21.48944 -20.71586 -20.52841 -18.23420 -18.05580 -17.73603 -17.19684 -16.93052 -16.45749 -16.10859 -15.76477 -15.44059 -15.16728 -14.96252 -14.86869 -14.60092 -14.24155 -13.96200 -13.78709 -13.69651 -13.46715 -13.28030 -13.16057 -12.93609 -12.81595 -12.55141 -11.94648 -11.62205 -11.29481 -11.02947 -11.02861 -10.88162 -10.66015 -10.54240 -9.88463 -9.77228 -9.68054 -9.61384 -9.12471 -9.01817 -9.00890 -8.53520 -6.95087 -6.31314 -4.03499 1.43848 1.89603 2.01290 2.48936 2.52551 2.75138 2.89018 3.24032 3.31670 3.48541 3.58020 3.78940 3.94373 4.06413 4.16622 4.30710 4.33380 4.37762 4.41037 4.47472 4.66250 4.71737 5.00039 5.07886 5.13172 5.17415 5.20485 5.36525 5.44024 5.55781 5.61791 5.72322 5.74905 5.97189 6.24368 6.37368 6.48582 6.85464 7.01791 7.32661 7.50643 7.61752 7.91705 8.39011 8.40040 9.14841 10.77912 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.047001 B = 0.001409 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.590923 B =19873.247352 C =20213.051024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.732 5.732 14 C 0.093 3.907 15 C 0.087 3.913 16 H 0.115 0.885 17 O -0.555 6.555 18 C 0.092 3.908 19 N -0.723 5.723 20 C 0.498 3.502 21 O -0.507 6.507 22 C 0.117 3.883 23 N -0.366 5.366 24 C 0.051 3.949 25 C -0.269 4.269 26 C 0.041 3.959 27 N -0.268 5.268 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.404 0.596 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.382 0.618 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.406 0.594 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.012 -27.118 1.884 35.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.387 5.387 14 C -0.033 4.033 15 C 0.027 3.973 16 H 0.132 0.868 17 O -0.361 6.361 18 C -0.033 4.033 19 N -0.377 5.377 20 C 0.281 3.719 21 O -0.380 6.380 22 C -0.008 4.008 23 N -0.149 5.149 24 C -0.094 4.094 25 C -0.299 4.299 26 C -0.146 4.146 27 N -0.089 5.089 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.238 0.762 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.231 0.769 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.242 0.758 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.191 0.809 41 H 0.166 0.834 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 23.690 -24.473 1.482 34.093 hybrid contribution -0.726 -1.126 0.298 1.372 sum 22.965 -25.599 1.780 34.436 Atomic orbital electron populations 1.69934 1.05921 1.27796 1.47989 1.24706 0.94441 0.98953 0.93133 0.86737 0.81884 0.83286 0.79955 1.19190 1.19901 1.15953 1.22314 0.88221 0.97561 1.58905 0.89364 1.84802 1.09360 0.99959 1.97438 1.23270 0.93798 1.04462 1.05904 1.20319 0.90698 0.82147 0.75158 1.90711 1.58776 1.42219 1.47654 1.45803 1.06751 1.08321 1.77823 1.21826 0.83104 0.94602 1.03726 1.22386 0.92776 0.93177 0.88966 0.86761 1.86584 1.67485 1.66438 1.15590 1.21971 0.95955 0.81315 1.04072 1.45724 1.08077 1.08180 1.75735 1.20560 0.83139 0.90722 0.77452 1.90830 1.42873 1.57525 1.46799 1.21429 0.78153 0.94913 1.06340 1.48068 1.05490 1.38149 1.23228 1.22552 0.94200 0.97490 0.95178 1.21525 0.95383 1.09660 1.03313 1.23961 0.97111 0.97065 0.96506 1.77512 0.96009 1.19579 1.15759 0.91915 0.88391 0.88408 0.76153 0.90281 0.90824 0.76895 0.89897 0.90414 0.75833 0.86636 0.85624 0.80883 0.83407 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 11 C 0.53 8.94 7.85 -10.98 -0.09 8.85 16 12 O -0.52 -10.82 15.86 5.56 0.09 -10.73 16 13 N -0.73 -8.23 5.50 -60.30 -0.33 -8.57 16 14 C 0.09 0.82 5.31 -4.04 -0.02 0.80 16 15 C 0.09 0.46 3.09 -26.73 -0.08 0.38 16 16 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 17 O -0.55 -3.09 13.03 -35.23 -0.46 -3.55 16 18 C 0.09 0.54 5.34 -4.04 -0.02 0.52 16 19 N -0.72 -3.54 5.45 -60.29 -0.33 -3.87 16 20 C 0.50 3.79 7.86 -10.99 -0.09 3.71 16 21 O -0.51 -6.60 15.72 5.56 0.09 -6.51 16 22 C 0.12 0.53 6.99 -5.19 -0.04 0.49 16 23 N -0.37 -2.96 3.39 -62.54 -0.21 -3.17 16 24 C 0.05 0.31 11.45 -17.22 -0.20 0.11 16 25 C -0.27 -1.85 10.80 -40.01 -0.43 -2.28 16 26 C 0.04 0.35 12.03 -17.36 -0.21 0.14 16 27 N -0.27 -2.97 11.66 30.63 0.36 -2.61 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 30 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 31 H 0.40 3.61 8.47 -40.82 -0.35 3.26 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.38 1.45 9.05 45.56 0.41 1.86 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.41 0.95 8.35 -40.82 -0.34 0.61 16 38 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.13 0.06 8.07 -51.93 -0.42 -0.36 16 40 H 0.17 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -41.19 383.81 -6.61 -47.80 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.92 Total: 0.90 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.74 Total: -1.27 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.26 Total: -43.81 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.28 Total: -20.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -41.19 -6.61 -47.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704925677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.034 kcal (2) G-P(sol) polarization free energy of solvation -41.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds