Wall clock time and date at job start Wed Apr 1 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47106 * 270.00104 * 3 2 1 5 5 H 1.48498 * 109.47314 * 30.00334 * 3 2 1 6 6 H 1.48506 * 109.46942 * 149.99901 * 3 2 1 7 7 C 1.38802 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00231 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00010 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47160 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00026 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99816 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47175 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.46550 * 304.99711 * 15 14 13 17 17 O 1.42898 * 109.47113 * 64.99921 * 15 14 13 18 18 C 1.52996 * 109.46972 * 185.00138 * 15 14 13 19 19 N 1.46500 * 109.46993 * 179.97438 * 18 15 14 20 20 C 1.34779 * 120.00169 * 180.02562 * 19 18 15 21 21 O 1.21282 * 119.99922 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 179.97438 * 20 19 18 23 23 N 1.46506 * 109.46928 * 179.97438 * 22 20 19 24 24 C 1.34944 * 126.03372 * 124.99978 * 23 22 20 25 25 C 1.35317 * 107.74658 * 179.97438 * 24 23 22 26 26 C 1.39871 * 107.91935 * 0.02562 * 25 24 23 27 27 N 1.30845 * 108.20108 * 359.74200 * 26 25 24 28 28 H 0.96997 * 120.00035 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47215 * 59.99585 * 10 9 7 30 30 H 1.09008 * 109.46927 * 299.99950 * 10 9 7 31 31 H 0.97001 * 119.99797 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.47384 * 59.99847 * 14 13 11 33 33 H 1.08999 * 109.47238 * 300.00245 * 14 13 11 34 34 H 0.96701 * 113.99881 * 60.00537 * 17 15 14 35 35 H 1.09004 * 109.47298 * 59.99824 * 18 15 14 36 36 H 1.09004 * 109.47552 * 299.99695 * 18 15 14 37 37 H 0.96996 * 119.99986 * 359.97438 * 19 18 15 38 38 H 1.09004 * 109.47103 * 59.99751 * 22 20 19 39 39 H 1.09000 * 109.47247 * 299.99628 * 22 20 19 40 40 H 1.08005 * 126.12990 * 359.96230 * 24 23 22 41 41 H 1.08002 * 126.04160 * 179.97438 * 25 24 23 42 42 H 1.07995 * 125.90070 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2964 -0.0003 13 7 6.0456 -4.4948 0.0010 14 6 7.4906 -4.7359 0.0005 15 6 7.7563 -6.2427 0.0009 16 1 7.2392 -6.7025 0.8430 17 8 7.2778 -6.8110 -1.2198 18 6 9.2600 -6.4953 0.1262 19 7 9.5144 -7.9381 0.1271 20 6 10.7765 -8.3998 0.2292 21 8 11.7017 -7.6209 0.3198 22 6 11.0380 -9.8839 0.2308 23 7 12.4780 -10.1259 0.3506 24 6 13.0798 -10.8867 1.2887 25 6 14.4120 -10.8543 1.0537 26 6 14.6319 -10.0455 -0.0660 27 7 13.4728 -9.6125 -0.4914 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8895 30 1 3.6440 -3.4314 0.8905 31 1 5.4290 -5.2436 0.0011 32 1 7.9340 -4.2882 0.8899 33 1 7.9332 -4.2895 -0.8900 34 1 7.6953 -6.4479 -2.0129 35 1 9.6250 -6.0618 1.0573 36 1 9.7772 -6.0354 -0.7160 37 1 8.7744 -8.5610 0.0551 38 1 10.6732 -10.3182 -0.7001 39 1 10.5208 -10.3432 1.0732 40 1 12.5865 -11.4249 2.0846 41 1 15.1713 -11.3624 1.6296 42 1 15.5922 -9.8205 -0.5059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704925677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:23 Heat of formation + Delta-G solvation = -74.303419 kcal Electronic energy + Delta-G solvation = -25415.088425 eV Core-core repulsion = 21329.138989 eV Total energy + Delta-G solvation = -4085.949437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08839 -40.92713 -40.50717 -38.79437 -35.60462 -35.24969 -34.67434 -34.28851 -32.03562 -31.00874 -30.47140 -28.54224 -27.85426 -26.12395 -23.06978 -22.53809 -21.95137 -21.77137 -21.23384 -19.92140 -18.74010 -18.28168 -18.05303 -17.75774 -17.47120 -17.12129 -16.71985 -16.51991 -16.37683 -16.09351 -15.65279 -15.43423 -15.11163 -14.91922 -14.83271 -14.57398 -14.34647 -14.27516 -14.19402 -13.74315 -13.54894 -13.34902 -13.22240 -13.03162 -12.99224 -12.66914 -12.13197 -11.88031 -11.58374 -11.42587 -11.23306 -11.17538 -10.97144 -10.53875 -10.32558 -10.24174 -10.16287 -9.49577 -9.00111 -8.51965 -6.22796 0.95349 0.99299 1.31059 1.45406 1.48391 1.51119 1.54491 1.56438 1.99007 2.01514 2.24169 2.32592 2.71375 2.86567 3.32915 3.52886 3.60705 3.71884 3.79629 3.94728 3.97909 4.08925 4.17803 4.22662 4.25880 4.37077 4.47690 4.63368 4.68708 4.73065 4.92970 4.95560 5.17243 5.25075 5.35691 5.70404 5.73594 6.11217 6.11236 6.42971 6.45984 6.64102 6.80137 6.93498 7.15556 7.17374 8.60406 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.047001 B = 0.001409 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.590923 B =19873.247352 C =20213.051024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.704 5.704 14 C 0.088 3.912 15 C 0.112 3.888 16 H 0.134 0.866 17 O -0.558 6.558 18 C 0.095 3.905 19 N -0.704 5.704 20 C 0.494 3.506 21 O -0.570 6.570 22 C 0.114 3.886 23 N -0.375 5.375 24 C 0.056 3.944 25 C -0.287 4.287 26 C 0.024 3.976 27 N -0.327 5.327 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.419 0.581 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.391 0.609 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.174 0.826 40 H 0.216 0.784 41 H 0.167 0.833 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.264 -29.437 2.625 37.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.359 5.359 14 C -0.036 4.036 15 C 0.052 3.948 16 H 0.152 0.848 17 O -0.365 6.365 18 C -0.031 4.031 19 N -0.359 5.359 20 C 0.280 3.720 21 O -0.447 6.447 22 C -0.011 4.011 23 N -0.158 5.158 24 C -0.089 4.089 25 C -0.316 4.316 26 C -0.162 4.162 27 N -0.148 5.148 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.257 0.743 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.261 0.739 38 H 0.154 0.846 39 H 0.191 0.809 40 H 0.233 0.767 41 H 0.185 0.815 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 23.895 -26.875 2.207 36.029 hybrid contribution -0.799 -0.595 0.062 0.999 sum 23.096 -27.470 2.269 35.961 Atomic orbital electron populations 1.70011 1.07293 1.29014 1.49136 1.25538 0.95233 1.02175 0.92871 0.85882 0.80678 0.79712 0.80186 1.18755 1.18341 1.16135 1.22467 0.90238 0.96717 1.58276 0.91861 1.84738 1.06470 1.06389 1.97599 1.23267 0.95904 0.99467 1.07575 1.19954 0.89390 0.83379 0.75267 1.90704 1.59326 1.43957 1.50322 1.45531 1.08303 1.06784 1.75239 1.22023 0.81018 0.97240 1.03351 1.22144 0.92379 0.90623 0.89702 0.84831 1.86578 1.67625 1.66340 1.15950 1.21837 0.96094 0.81959 1.03174 1.45567 1.08011 1.07981 1.74331 1.21182 0.82860 0.91880 0.76099 1.90811 1.44769 1.59275 1.49880 1.21831 0.77003 0.92711 1.09506 1.48345 1.06313 1.38058 1.23102 1.23277 0.94191 0.96389 0.95046 1.21891 0.96620 1.09898 1.03205 1.24370 0.97305 0.97187 0.97310 1.77410 0.97436 1.21786 1.18152 0.91370 0.86809 0.86661 0.74306 0.90760 0.91362 0.75868 0.90785 0.91687 0.73895 0.84577 0.80900 0.76713 0.81513 0.78856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 2 C 0.05 2.75 5.50 84.86 0.47 3.22 16 3 Si 0.91 44.73 27.74 68.60 1.90 46.63 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 7 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.88 18.55 -56.49 -1.05 -9.93 16 10 C -0.11 -4.00 6.16 71.24 0.44 -3.56 16 11 C 0.53 17.15 7.85 87.66 0.69 17.84 16 12 O -0.56 -23.19 15.86 -3.02 -0.05 -23.24 16 13 N -0.70 -14.05 5.50 -463.07 -2.55 -16.60 16 14 C 0.09 1.39 5.31 86.38 0.46 1.84 16 15 C 0.11 0.88 3.09 30.59 0.09 0.97 16 16 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 17 O -0.56 -4.39 13.03 -148.98 -1.94 -6.33 16 18 C 0.09 0.97 5.34 86.38 0.46 1.43 16 19 N -0.70 -5.27 5.45 -463.05 -2.52 -7.79 16 20 C 0.49 6.85 7.86 87.66 0.69 7.54 16 21 O -0.57 -15.04 15.72 -3.04 -0.05 -15.08 16 22 C 0.11 0.71 6.99 85.63 0.60 1.31 16 23 N -0.37 -5.51 3.39 -351.78 -1.19 -6.70 16 24 C 0.06 0.56 11.45 83.54 0.96 1.52 16 25 C -0.29 -3.64 10.80 21.99 0.24 -3.40 16 26 C 0.02 0.43 12.03 85.24 1.03 1.46 16 27 N -0.33 -7.36 11.66 -57.02 -0.66 -8.02 16 28 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 30 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.42 5.99 8.47 -92.71 -0.79 5.20 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.39 1.92 9.05 -74.06 -0.67 1.25 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.42 0.45 8.35 -92.71 -0.77 -0.33 16 38 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.17 -0.66 8.07 -2.39 -0.02 -0.68 16 40 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -93.38 383.81 -2.20 -95.58 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.18 Total: 6.20 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.80 Total: 0.38 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -6.63 Total: -94.20 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -2.04 Total: -44.66 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -93.38 -2.20 -95.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704925677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.274 kcal (2) G-P(sol) polarization free energy of solvation -93.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds