Wall clock time and date at job start Wed Apr 1 2020 00:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 N 1.46897 * 109.47368 * 90.00297 * 5 4 3 7 7 C 1.46900 * 111.00273 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47359 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47159 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47412 * 55.00172 * 9 8 7 11 11 C 1.53007 * 109.47138 * 175.00123 * 9 8 7 12 12 N 1.46503 * 109.47309 * 294.99957 * 9 8 7 13 13 C 1.34771 * 119.99981 * 155.00142 * 12 9 8 14 14 O 1.21276 * 120.00132 * 0.02562 * 13 12 9 15 15 C 1.50707 * 119.99927 * 180.02562 * 13 12 9 16 16 S 1.80997 * 109.47013 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99811 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99138 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00129 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47519 * 90.00502 * 21 19 17 23 23 H 1.48503 * 109.46982 * 209.99914 * 21 19 17 24 24 H 1.48501 * 109.47322 * 329.99945 * 21 19 17 25 25 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 26 26 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 27 27 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 28 28 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 29 29 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 30 30 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 31 31 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 32 32 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 33 33 H 1.00900 * 111.00148 * 303.95082 * 6 5 4 34 34 H 1.08998 * 109.46861 * 300.00073 * 7 6 5 35 35 H 1.08997 * 109.46878 * 59.99403 * 7 6 5 36 36 H 1.08998 * 109.47329 * 299.99952 * 8 7 6 37 37 H 1.09005 * 109.47245 * 60.00001 * 8 7 6 38 38 H 1.08999 * 109.47063 * 60.00292 * 11 9 8 39 39 H 1.09001 * 109.46864 * 180.02562 * 11 9 8 40 40 H 1.08997 * 109.46902 * 300.00038 * 11 9 8 41 41 H 0.97000 * 120.00104 * 335.00329 * 12 9 8 42 42 H 1.08992 * 109.46763 * 299.99807 * 15 13 12 43 43 H 1.08992 * 109.47058 * 59.99808 * 15 13 12 44 44 H 0.97005 * 119.99278 * 179.97438 * 20 19 17 45 45 H 1.07994 * 125.20771 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 7 4.9892 2.3055 1.3982 7 6 5.9876 3.3821 1.4432 8 6 6.3013 3.7262 2.9005 9 6 7.3416 4.8471 2.9473 10 1 6.9852 5.6981 2.3669 11 6 7.5634 5.2769 4.3989 12 7 8.6045 4.3653 2.3823 13 6 9.4833 5.2396 1.8536 14 8 9.2289 6.4254 1.8459 15 6 10.7822 4.7439 1.2719 16 16 11.7376 6.1478 0.6456 17 6 13.1612 5.3037 0.0410 18 1 13.2296 4.2295 0.1281 19 6 14.1952 6.0197 -0.5464 20 7 15.2588 5.3891 -0.9976 21 14 14.0771 7.8778 -0.6964 22 1 14.6595 8.5103 0.5145 23 1 14.8263 8.3260 -1.8977 24 1 12.6519 8.2745 -0.8253 25 6 3.9751 -0.4477 0.0046 26 16 2.5210 -1.4372 -0.0034 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.8669 2.0895 0.0004 31 1 5.5642 1.6105 -0.4991 32 1 4.2586 2.8203 -0.5030 33 1 4.1587 2.5604 1.9114 34 1 6.8986 3.0539 0.9427 35 1 5.5935 4.2642 0.9386 36 1 5.3902 4.0546 3.4006 37 1 6.6953 2.8442 3.4055 38 1 7.9199 4.4260 4.9793 39 1 8.3042 6.0758 4.4321 40 1 6.6238 5.6354 4.8192 41 1 8.8082 3.4169 2.3888 42 1 11.3540 4.2307 2.0450 43 1 10.5742 4.0530 0.4550 44 1 15.9813 5.8894 -1.4084 45 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716120142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:40 Heat of formation + Delta-G solvation = -22.147038 kcal Electronic energy + Delta-G solvation = -23612.522572 eV Core-core repulsion = 20075.128020 eV Total energy + Delta-G solvation = -3537.394552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.57813 -38.97843 -36.95731 -35.20454 -32.70681 -32.43434 -31.69955 -29.41471 -28.55074 -27.11851 -25.87558 -25.60251 -22.76924 -21.94546 -21.29120 -20.37617 -19.27433 -17.85929 -17.41707 -16.73331 -16.23877 -16.18520 -15.34532 -15.06496 -14.94606 -14.90293 -14.29588 -14.19609 -14.10349 -13.63441 -13.48153 -13.36552 -13.29479 -13.07097 -12.78936 -12.77907 -12.38872 -12.36220 -12.11845 -12.00362 -11.77423 -11.45667 -11.32888 -11.25742 -11.02438 -11.00260 -10.93116 -10.58273 -9.85257 -9.48053 -9.01758 -8.96883 -8.95037 -8.86448 -8.64489 -8.49352 -6.91079 -6.28559 -4.00057 0.64976 1.27391 1.63849 2.28261 2.78505 3.00047 3.31831 3.35480 3.50617 3.68164 3.88657 4.33459 4.36932 4.59957 4.69664 4.73636 4.81783 4.82889 4.84678 4.91895 5.04080 5.05350 5.10557 5.24943 5.27862 5.31849 5.33025 5.37314 5.40487 5.46781 5.63495 5.66470 5.75934 5.78093 5.79647 6.01841 6.03460 6.06215 6.13784 6.17310 6.60998 6.64096 7.01426 7.65915 7.94596 8.42260 8.52837 9.17703 10.80696 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.001744 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.849563 B =16052.495714 C =17123.712180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.180 4.180 3 C -0.136 4.136 4 C -0.099 4.099 5 C 0.117 3.883 6 N -0.684 5.684 7 C 0.056 3.944 8 C -0.122 4.122 9 C 0.145 3.855 10 H 0.086 0.914 11 C -0.163 4.163 12 N -0.731 5.731 13 C 0.531 3.469 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.189 4.189 26 S 0.091 5.909 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.340 0.660 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.120 -12.354 5.671 33.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.298 4.298 3 C -0.166 4.166 4 C -0.112 4.112 5 C -0.014 4.014 6 N -0.315 5.315 7 C -0.073 4.073 8 C -0.161 4.161 9 C 0.039 3.961 10 H 0.104 0.896 11 C -0.221 4.221 12 N -0.386 5.386 13 C 0.317 3.683 14 O -0.396 6.396 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.326 4.326 26 S 0.355 5.645 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.154 0.846 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.233 0.767 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -30.182 -12.435 5.620 33.123 hybrid contribution 0.506 1.059 -0.408 1.243 sum -29.676 -11.375 5.212 32.206 Atomic orbital electron populations 1.20332 0.87858 1.03157 1.02756 1.24435 0.99941 0.95740 1.09638 1.19974 0.92466 0.99252 1.04898 1.18753 0.94027 0.94435 1.03950 1.20572 0.96516 0.94269 0.90043 1.60514 1.15682 1.42421 1.12868 1.22018 0.96201 0.92105 0.96948 1.21847 0.98928 0.98750 0.96547 1.20859 0.83563 0.96948 0.94722 0.89564 1.22170 1.02284 1.02000 0.95684 1.46092 1.19317 1.10533 1.62656 1.20266 0.84765 0.86305 0.76931 1.90690 1.76662 1.16165 1.56034 1.23285 0.96082 1.04483 1.03666 1.84774 1.19771 1.10193 1.76881 1.22327 1.02467 0.96979 1.45132 0.89401 1.24716 0.94001 0.99047 0.93553 1.69944 1.07071 1.36437 1.38236 0.86732 0.81241 0.85164 0.78684 1.19223 1.19961 1.15947 1.25461 1.01815 0.95983 1.09303 1.84290 0.97119 1.09699 1.73407 0.90757 0.91310 0.90552 0.84634 0.89927 0.94135 0.84226 0.90376 0.94926 0.90647 0.90378 0.92455 0.91708 0.91965 0.76676 0.88554 0.88563 0.91963 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.38 36.00 0.37 -0.02 16 2 C -0.18 -1.29 6.51 -36.00 -0.23 -1.53 16 3 C -0.14 -1.02 9.85 -41.21 -0.41 -1.43 16 4 C -0.10 -0.81 5.31 -106.25 -0.56 -1.37 16 5 C 0.12 0.93 5.94 -4.98 -0.03 0.90 16 6 N -0.68 -5.39 6.49 -115.06 -0.75 -6.14 16 7 C 0.06 0.47 5.57 -3.83 -0.02 0.45 16 8 C -0.12 -0.95 5.01 -26.74 -0.13 -1.08 16 9 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 10 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 11 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 12 N -0.73 -8.93 4.53 -53.80 -0.24 -9.18 16 13 C 0.53 9.22 7.81 -10.98 -0.09 9.13 16 14 O -0.52 -11.02 15.52 5.56 0.09 -10.94 16 15 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 21 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C -0.19 -1.54 10.98 29.04 0.32 -1.22 16 26 S 0.09 0.67 23.33 -107.50 -2.51 -1.84 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.04 0.31 8.13 -51.93 -0.42 -0.11 16 33 H 0.34 2.41 8.72 -39.29 -0.34 2.07 16 34 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 3.91 8.60 -40.82 -0.35 3.55 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -33.65 403.11 -10.85 -44.50 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.41 Total: 2.16 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.17 Total: -10.33 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.22 Total: -41.15 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -4.50 Total: -7.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.65 -10.85 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716120142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds