Wall clock time and date at job start Wed Apr 1 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 N 1.46897 * 109.47368 * 90.00297 * 5 4 3 7 7 C 1.46900 * 111.00273 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47359 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47159 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47203 * 304.99870 * 9 8 7 11 11 C 1.53000 * 109.46987 * 185.00207 * 9 8 7 12 12 N 1.46495 * 109.47305 * 65.00249 * 9 8 7 13 13 C 1.34773 * 120.00305 * 205.00050 * 12 9 8 14 14 O 1.21282 * 120.00118 * 359.97438 * 13 12 9 15 15 C 1.50706 * 120.00575 * 179.97438 * 13 12 9 16 16 S 1.80993 * 109.47298 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99790 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99953 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47302 * 90.00020 * 21 19 17 23 23 H 1.48496 * 109.47303 * 209.99912 * 21 19 17 24 24 H 1.48505 * 109.47326 * 329.99767 * 21 19 17 25 25 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 26 26 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 27 27 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 28 28 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 29 29 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 30 30 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 31 31 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 32 32 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 33 33 H 1.00909 * 110.99997 * 56.04065 * 6 5 4 34 34 H 1.08998 * 109.46861 * 300.00073 * 7 6 5 35 35 H 1.08997 * 109.46878 * 59.99403 * 7 6 5 36 36 H 1.08998 * 109.47329 * 299.99952 * 8 7 6 37 37 H 1.09005 * 109.47245 * 60.00001 * 8 7 6 38 38 H 1.09002 * 109.47562 * 60.00040 * 11 9 8 39 39 H 1.09001 * 109.47229 * 180.02562 * 11 9 8 40 40 H 1.08997 * 109.47163 * 299.99564 * 11 9 8 41 41 H 0.96998 * 119.99854 * 24.99269 * 12 9 8 42 42 H 1.09005 * 109.46667 * 300.00286 * 15 13 12 43 43 H 1.08997 * 109.46788 * 59.99568 * 15 13 12 44 44 H 0.97004 * 119.99644 * 180.02562 * 20 19 17 45 45 H 1.07994 * 125.20771 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 7 4.9892 2.3055 1.3982 7 6 5.9876 3.3821 1.4432 8 6 6.3013 3.7262 2.9005 9 6 7.3416 4.8471 2.9473 10 1 8.2192 4.5527 2.3716 11 6 7.7476 5.1058 4.3996 12 7 6.7696 6.0685 2.3753 13 6 7.5783 7.0078 1.8462 14 8 8.7798 6.8423 1.8441 15 6 6.9898 8.2640 1.2572 16 16 8.3215 9.3193 0.6337 17 6 7.3764 10.6738 0.0197 18 1 6.2996 10.6620 0.1016 19 6 8.0159 11.7558 -0.5693 20 7 9.3283 11.7699 -0.6696 21 14 7.0140 13.1920 -1.2196 22 1 6.8372 14.1999 -0.1434 23 1 7.7246 13.8122 -2.3666 24 1 5.6837 12.7058 -1.6659 25 6 3.9751 -0.4477 0.0046 26 16 2.5210 -1.4372 -0.0034 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.8669 2.0895 0.0004 31 1 5.5642 1.6105 -0.4991 32 1 4.2586 2.8203 -0.5030 33 1 5.3049 1.4981 1.9147 34 1 6.8986 3.0539 0.9427 35 1 5.5935 4.2642 0.9386 36 1 5.3902 4.0546 3.4006 37 1 6.6953 2.8442 3.4055 38 1 8.1733 4.1971 4.8253 39 1 8.4884 5.9047 4.4330 40 1 6.8702 5.4003 4.9752 41 1 5.8087 6.2010 2.3772 42 1 6.3197 8.0020 0.4384 43 1 6.4324 8.7991 2.0259 44 1 9.7751 12.5262 -1.0809 45 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716120143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:47 Heat of formation + Delta-G solvation = -22.322968 kcal Electronic energy + Delta-G solvation = -23592.002147 eV Core-core repulsion = 20054.599966 eV Total energy + Delta-G solvation = -3537.402181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.47338 -38.94896 -36.90071 -35.15828 -32.66116 -32.42120 -31.60376 -29.34463 -28.43024 -27.06479 -25.91446 -25.47044 -22.75804 -21.80098 -21.21807 -20.27303 -19.25865 -17.84160 -17.59063 -16.54845 -16.14707 -15.89499 -15.48688 -15.06824 -14.84172 -14.79810 -14.26605 -14.14508 -14.03504 -13.64526 -13.51235 -13.26460 -13.20751 -12.99326 -12.74198 -12.58073 -12.36150 -12.30907 -12.01104 -11.87479 -11.86341 -11.35561 -11.26168 -11.05983 -11.03156 -11.00603 -10.86317 -10.74700 -9.80441 -9.34814 -9.06356 -8.98271 -8.87851 -8.80610 -8.63827 -8.22372 -6.48885 -6.21017 -3.91306 0.64008 1.27972 1.63402 2.32158 3.06472 3.13158 3.22755 3.28653 3.33371 3.75533 3.91915 4.21271 4.36440 4.63329 4.71190 4.85148 4.85804 4.85949 4.96571 5.06778 5.10784 5.14140 5.20206 5.23558 5.34955 5.38855 5.41213 5.44096 5.51930 5.61961 5.69499 5.73282 5.78982 5.84215 5.91062 6.05513 6.09561 6.16052 6.17863 6.23782 6.63970 6.72748 7.02987 7.60334 7.76748 8.35986 8.66014 9.24370 10.86378 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.001781 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.178439 B =15713.876050 C =17240.700598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.180 4.180 3 C -0.122 4.122 4 C -0.089 4.089 5 C 0.116 3.884 6 N -0.684 5.684 7 C 0.056 3.944 8 C -0.122 4.122 9 C 0.144 3.856 10 H 0.086 0.914 11 C -0.163 4.163 12 N -0.734 5.734 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.214 4.214 26 S 0.088 5.912 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.340 0.660 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 -26.912 4.791 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.297 4.297 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.015 4.015 6 N -0.315 5.315 7 C -0.073 4.073 8 C -0.160 4.160 9 C 0.039 3.961 10 H 0.104 0.896 11 C -0.221 4.221 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.350 4.350 26 S 0.352 5.648 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.158 0.842 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.439 -28.241 4.773 32.075 hybrid contribution -1.315 2.169 -0.656 2.621 sum -15.754 -26.072 4.118 30.739 Atomic orbital electron populations 1.20339 0.87797 1.03223 1.02773 1.24469 0.99994 0.95567 1.09675 1.19969 0.92233 0.99434 1.03515 1.18792 0.94745 0.93786 1.02841 1.20595 0.95143 0.95668 0.90138 1.60508 1.45770 1.12584 1.12597 1.22021 0.93176 0.95042 0.97030 1.21844 0.99476 0.98248 0.96468 1.20843 0.96621 0.84036 0.94627 0.89580 1.22170 1.01920 1.02332 0.95706 1.46124 1.10160 1.19845 1.62691 1.20295 0.86959 0.84003 0.76882 1.90694 1.14710 1.77960 1.55965 1.23537 1.06042 0.97518 1.03349 1.85384 1.06228 1.16261 1.75553 1.22872 0.95027 1.05224 1.45211 0.90947 1.24992 0.95182 0.98099 0.95342 1.70021 1.07547 1.30954 1.41774 0.86171 0.79667 0.81198 0.78483 1.20276 1.20768 1.19700 1.25429 1.01846 0.96247 1.11459 1.84227 0.96975 1.09811 1.73750 0.90740 0.91376 0.90378 0.84156 0.94192 0.89777 0.84279 0.94893 0.90359 0.90434 0.90714 0.92020 0.91657 0.92543 0.76853 0.89329 0.89287 0.92208 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.38 36.00 0.37 -0.07 16 2 C -0.18 -1.37 6.51 -36.00 -0.23 -1.61 16 3 C -0.12 -1.01 9.85 -41.21 -0.41 -1.42 16 4 C -0.09 -0.74 5.31 -106.25 -0.56 -1.30 16 5 C 0.12 0.94 5.94 -4.98 -0.03 0.91 16 6 N -0.68 -5.57 6.49 -115.06 -0.75 -6.32 16 7 C 0.06 0.50 5.57 -3.83 -0.02 0.47 16 8 C -0.12 -1.00 5.01 -26.74 -0.13 -1.13 16 9 C 0.14 1.62 2.57 -67.93 -0.17 1.44 16 10 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 11 C -0.16 -1.77 9.48 37.16 0.35 -1.41 16 12 N -0.73 -9.50 4.53 -53.81 -0.24 -9.74 16 13 C 0.53 9.77 7.81 -10.98 -0.09 9.69 16 14 O -0.52 -11.64 15.52 5.56 0.09 -11.55 16 15 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.21 -1.63 10.98 29.04 0.32 -1.31 16 26 S 0.09 0.65 23.33 -107.50 -2.51 -1.86 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.08 0.72 8.13 -51.93 -0.42 0.29 16 33 H 0.34 2.49 8.72 -39.29 -0.34 2.15 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -33.99 405.80 -11.36 -45.34 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.37 Total: 2.51 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -0.19 Total: -11.59 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.26 Total: -41.54 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -4.72 Total: -5.73 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.99 -11.36 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716120143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.022 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds