Wall clock time and date at job start Wed Apr 1 2020 00:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 N 1.46897 * 109.47368 * 90.00297 * 5 4 3 7 7 C 1.46900 * 111.00273 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47359 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47159 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47203 * 304.99870 * 9 8 7 11 11 C 1.53000 * 109.46987 * 185.00207 * 9 8 7 12 12 N 1.46495 * 109.47305 * 65.00249 * 9 8 7 13 13 C 1.34773 * 120.00305 * 205.00050 * 12 9 8 14 14 O 1.21282 * 120.00118 * 359.97438 * 13 12 9 15 15 C 1.50706 * 120.00575 * 179.97438 * 13 12 9 16 16 S 1.80993 * 109.47298 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99790 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99953 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47302 * 90.00020 * 21 19 17 23 23 H 1.48496 * 109.47303 * 209.99912 * 21 19 17 24 24 H 1.48505 * 109.47326 * 329.99767 * 21 19 17 25 25 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 26 26 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 27 27 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 28 28 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 29 29 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 30 30 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 31 31 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 32 32 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 33 33 H 1.00909 * 110.99997 * 56.04065 * 6 5 4 34 34 H 1.08998 * 109.46861 * 300.00073 * 7 6 5 35 35 H 1.08997 * 109.46878 * 59.99403 * 7 6 5 36 36 H 1.08998 * 109.47329 * 299.99952 * 8 7 6 37 37 H 1.09005 * 109.47245 * 60.00001 * 8 7 6 38 38 H 1.09002 * 109.47562 * 60.00040 * 11 9 8 39 39 H 1.09001 * 109.47229 * 180.02562 * 11 9 8 40 40 H 1.08997 * 109.47163 * 299.99564 * 11 9 8 41 41 H 0.96998 * 119.99854 * 24.99269 * 12 9 8 42 42 H 1.09005 * 109.46667 * 300.00286 * 15 13 12 43 43 H 1.08997 * 109.46788 * 59.99568 * 15 13 12 44 44 H 0.97004 * 119.99644 * 180.02562 * 20 19 17 45 45 H 1.07994 * 125.20771 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 7 4.9892 2.3055 1.3982 7 6 5.9876 3.3821 1.4432 8 6 6.3013 3.7262 2.9005 9 6 7.3416 4.8471 2.9473 10 1 8.2192 4.5527 2.3716 11 6 7.7476 5.1058 4.3996 12 7 6.7696 6.0685 2.3753 13 6 7.5783 7.0078 1.8462 14 8 8.7798 6.8423 1.8441 15 6 6.9898 8.2640 1.2572 16 16 8.3215 9.3193 0.6337 17 6 7.3764 10.6738 0.0197 18 1 6.2996 10.6620 0.1016 19 6 8.0159 11.7558 -0.5693 20 7 9.3283 11.7699 -0.6696 21 14 7.0140 13.1920 -1.2196 22 1 6.8372 14.1999 -0.1434 23 1 7.7246 13.8122 -2.3666 24 1 5.6837 12.7058 -1.6659 25 6 3.9751 -0.4477 0.0046 26 16 2.5210 -1.4372 -0.0034 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.8669 2.0895 0.0004 31 1 5.5642 1.6105 -0.4991 32 1 4.2586 2.8203 -0.5030 33 1 5.3049 1.4981 1.9147 34 1 6.8986 3.0539 0.9427 35 1 5.5935 4.2642 0.9386 36 1 5.3902 4.0546 3.4006 37 1 6.6953 2.8442 3.4055 38 1 8.1733 4.1971 4.8253 39 1 8.4884 5.9047 4.4330 40 1 6.8702 5.4003 4.9752 41 1 5.8087 6.2010 2.3772 42 1 6.3197 8.0020 0.4384 43 1 6.4324 8.7991 2.0259 44 1 9.7751 12.5262 -1.0809 45 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716120143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:46 Heat of formation + Delta-G solvation = -44.759253 kcal Electronic energy + Delta-G solvation = -23592.975057 eV Core-core repulsion = 20054.599966 eV Total energy + Delta-G solvation = -3538.375091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78745 -39.58261 -37.84090 -36.06464 -34.58435 -33.41978 -32.64066 -30.35596 -29.63790 -27.65596 -27.58206 -26.58407 -23.58724 -22.48100 -22.13599 -21.51968 -19.88715 -19.77938 -18.21212 -17.88639 -17.34635 -16.87820 -16.63367 -16.41138 -16.14311 -15.88276 -15.70062 -14.90178 -14.77901 -14.71970 -14.56774 -14.25017 -14.11904 -13.96377 -13.90574 -13.45558 -13.26922 -13.16441 -13.01956 -12.89366 -12.87754 -12.79659 -12.58388 -12.43902 -12.10975 -12.02906 -11.78222 -11.70850 -11.55766 -11.14257 -10.88475 -10.27043 -10.08499 -9.56188 -9.43917 -9.24131 -8.66148 -8.34594 -6.12427 0.06708 0.72614 1.06220 1.27766 1.42277 1.47554 1.58099 1.65484 1.71920 2.26774 2.34682 2.99440 3.22040 3.33347 3.81711 3.93044 4.00146 4.05123 4.13318 4.15252 4.30362 4.32789 4.39861 4.49919 4.51769 4.55710 4.57118 4.65256 4.71115 4.74055 4.79269 4.85177 4.92251 5.10124 5.11141 5.22365 5.23711 5.33583 5.41916 5.48377 5.59269 5.60160 5.96398 6.19920 6.42492 6.56311 7.06705 7.29972 8.74558 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.001781 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.178439 B =15713.876050 C =17240.700598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.185 4.185 3 C -0.139 4.139 4 C -0.098 4.098 5 C 0.118 3.882 6 N -0.681 5.681 7 C 0.059 3.941 8 C -0.106 4.106 9 C 0.143 3.857 10 H 0.064 0.936 11 C -0.159 4.159 12 N -0.707 5.707 13 C 0.535 3.465 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.151 6.151 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.258 1.258 25 C -0.219 4.219 26 S 0.094 5.906 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.346 0.654 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.414 0.586 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.543 -27.834 5.422 33.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.302 4.302 3 C -0.169 4.169 4 C -0.111 4.111 5 C -0.013 4.013 6 N -0.312 5.312 7 C -0.070 4.070 8 C -0.145 4.145 9 C 0.038 3.962 10 H 0.082 0.918 11 C -0.217 4.217 12 N -0.362 5.362 13 C 0.321 3.679 14 O -0.445 6.445 15 C -0.282 4.282 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.356 4.356 26 S 0.358 5.642 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.160 0.840 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.233 -29.205 5.429 34.342 hybrid contribution -0.514 2.300 -0.799 2.489 sum -17.747 -26.904 4.630 32.561 Atomic orbital electron populations 1.20427 0.86343 1.03966 1.03506 1.24806 1.01154 0.95428 1.08853 1.20099 0.92483 0.99839 1.04471 1.18841 0.94798 0.94016 1.03480 1.20540 0.95155 0.95475 0.90093 1.60483 1.45312 1.12747 1.12693 1.21941 0.92860 0.94914 0.97262 1.21726 0.98863 0.97569 0.96303 1.21002 0.96916 0.83831 0.94436 0.91825 1.22130 1.01750 1.02322 0.95492 1.45907 1.10555 1.19074 1.60624 1.20018 0.86545 0.84300 0.77065 1.90684 1.16726 1.78888 1.58195 1.23385 1.03378 0.97093 1.04309 1.85561 1.11550 1.18696 1.76621 1.23207 0.95423 1.05510 1.45265 0.89963 1.26131 0.96370 1.01323 0.95386 1.70187 1.09653 1.32086 1.42822 0.84955 0.78205 0.76964 0.77867 1.19300 1.20306 1.18192 1.25640 1.02659 0.96173 1.11078 1.84195 0.96841 1.09703 1.73494 0.89952 0.90554 0.89712 0.84001 0.94156 0.90431 0.83528 0.95846 0.91470 0.89190 0.88648 0.89722 0.95040 0.90932 0.74883 0.87409 0.87398 0.92015 0.80889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 71.24 0.74 -0.02 16 2 C -0.19 -2.59 6.51 24.59 0.16 -2.43 16 3 C -0.14 -2.18 9.85 21.22 0.21 -1.97 16 4 C -0.10 -1.53 5.31 -20.92 -0.11 -1.64 16 5 C 0.12 1.82 5.94 85.56 0.51 2.32 16 6 N -0.68 -9.87 6.49 -517.95 -3.36 -13.23 16 7 C 0.06 0.95 5.57 86.30 0.48 1.43 16 8 C -0.11 -1.46 5.01 30.59 0.15 -1.30 16 9 C 0.14 3.00 2.57 44.99 0.12 3.11 16 10 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 11 C -0.16 -3.18 9.48 71.98 0.68 -2.49 16 12 N -0.71 -17.31 4.53 -442.54 -2.00 -19.32 16 13 C 0.53 19.57 7.81 87.66 0.68 20.26 16 14 O -0.57 -26.19 15.52 -3.04 -0.05 -26.24 16 15 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 16 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 17 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.72 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 21 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 25 C -0.22 -3.07 10.98 66.72 0.73 -2.34 16 26 S 0.09 1.25 23.33 -56.49 -1.32 -0.07 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.04 0.61 8.12 -2.38 -0.02 0.59 16 32 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.35 4.32 8.72 -89.69 -0.78 3.53 16 34 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 1.23 7.75 -2.39 -0.02 1.21 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.41 7.54 8.60 -92.71 -0.80 6.75 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 45 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -76.11 405.80 -0.26 -76.38 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.59 Total: 21.57 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.91 Total: -19.32 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -5.08 Total: -88.49 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -2.48 Total: -9.69 kcal Total: -76.11 -0.26 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716120143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.616 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds