Wall clock time and date at job start Wed Apr 1 2020 00:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86792 * 120.00375 * 2 1 4 4 H 1.48501 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46762 * 299.99794 * 3 2 1 6 6 H 1.48497 * 109.47529 * 59.99575 * 3 2 1 7 7 C 1.38805 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99604 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00157 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47002 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00076 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00325 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47144 * 184.98121 * 14 13 11 16 16 H 1.08997 * 112.74148 * 314.85388 * 15 14 13 17 17 C 1.53501 * 113.46655 * 85.67876 * 15 14 13 18 18 C 1.53231 * 83.43396 * 140.67565 * 17 15 14 19 19 N 1.47070 * 113.46507 * 184.10881 * 15 14 13 20 20 C 1.34771 * 136.05773 * 38.06541 * 19 15 14 21 21 O 1.21280 * 120.00157 * 355.02503 * 20 19 15 22 22 C 1.50700 * 120.00019 * 175.29592 * 20 19 15 23 23 H 1.08999 * 110.48989 * 317.02655 * 22 20 19 24 24 C 1.54101 * 110.54864 * 79.72740 * 22 20 19 25 25 N 1.47055 * 103.86651 * 118.59497 * 24 22 20 26 26 C 1.33954 * 109.17412 * 359.97438 * 25 24 22 27 27 O 1.21586 * 123.03961 * 179.97438 * 26 25 24 28 28 N 1.33943 * 113.91785 * 0.02562 * 26 25 24 29 29 H 0.96998 * 119.99763 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46952 * 59.99797 * 10 9 7 31 31 H 1.09002 * 109.46688 * 300.00349 * 10 9 7 32 32 H 0.97011 * 119.99995 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46801 * 64.98650 * 14 13 11 34 34 H 1.08996 * 109.47167 * 304.98840 * 14 13 11 35 35 H 1.09006 * 114.20111 * 254.43523 * 17 15 14 36 36 H 1.08998 * 114.20847 * 27.05481 * 17 15 14 37 37 H 1.08995 * 113.38491 * 219.29389 * 18 17 15 38 38 H 1.09006 * 113.47213 * 88.92455 * 18 17 15 39 39 H 1.08996 * 110.55290 * 237.18843 * 24 22 20 40 40 H 1.09003 * 110.54814 * 359.97438 * 24 22 20 41 41 H 0.96996 * 125.41615 * 180.02562 * 25 24 22 42 42 H 0.97002 * 125.41043 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5156 -3.8916 0.0029 11 6 1.9870 -5.3028 0.0048 12 8 0.7908 -5.5023 0.0059 13 7 2.8437 -6.3433 0.0054 14 6 2.3299 -7.7152 0.0078 15 6 3.4970 -8.6966 0.1331 16 1 4.3305 -8.4461 -0.5230 17 6 3.9186 -8.9627 1.5849 18 6 4.0862 -10.4022 1.0871 19 7 3.0880 -10.1068 0.0482 20 6 2.1897 -10.8154 -0.6640 21 8 1.4186 -10.2452 -1.4063 22 6 2.1393 -12.3159 -0.5333 23 1 3.1466 -12.7323 -0.5262 24 6 1.3769 -12.7224 0.7428 25 7 0.2318 -13.4947 0.2382 26 6 0.2903 -13.5456 -1.0991 27 8 -0.5363 -14.1245 -1.7773 28 7 1.3425 -12.9020 -1.6214 29 1 -0.4850 0.8400 -0.0004 30 1 3.1243 -3.7307 0.8928 31 1 3.1243 -3.7322 -0.8872 32 1 3.8006 -6.1837 0.0049 33 1 1.7946 -7.9043 -0.9227 34 1 1.6516 -7.8477 0.8506 35 1 4.8500 -8.4769 1.8759 36 1 3.1187 -8.8323 2.3137 37 1 3.7548 -11.1503 1.8072 38 1 5.0790 -10.6109 0.6883 39 1 2.0047 -13.3427 1.3824 40 1 1.0352 -11.8389 1.2821 41 1 -0.4570 -13.9019 0.7865 42 1 1.5466 -12.8336 -2.5673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721992636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:47 Heat of formation + Delta-G solvation = -37.720173 kcal Electronic energy + Delta-G solvation = -26560.140591 eV Core-core repulsion = 22475.777523 eV Total energy + Delta-G solvation = -4084.363068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87357 -40.77045 -39.04636 -38.27201 -36.57272 -34.49808 -33.48090 -32.43344 -31.33516 -30.05726 -29.05108 -27.73083 -25.48966 -24.62712 -23.49470 -22.45702 -22.19402 -20.58411 -19.47893 -18.36337 -18.17997 -17.83423 -16.90246 -16.68257 -16.57075 -16.06727 -15.74652 -15.38776 -15.23971 -14.81804 -14.78376 -14.61957 -14.37304 -14.07735 -13.91363 -13.70409 -13.38773 -13.19324 -13.07959 -12.76674 -12.56576 -12.43494 -12.07213 -11.77478 -11.17269 -11.07656 -11.02541 -10.76339 -10.73760 -10.55011 -9.86424 -9.81535 -9.46017 -9.41279 -9.26622 -9.08422 -8.90966 -8.23106 -6.50513 -6.22140 -3.92781 1.84259 2.01281 2.38137 2.76687 3.05150 3.09039 3.20967 3.27887 3.32210 3.41520 3.63400 3.66185 3.72064 3.80897 4.19526 4.19920 4.34132 4.41997 4.61934 4.62345 4.66972 4.77579 4.79048 5.02954 5.12989 5.15247 5.16429 5.23430 5.47676 5.62590 5.68218 5.87796 5.96009 6.11688 6.52142 6.53229 6.66971 6.88334 7.10985 7.56068 7.59110 7.65541 8.18260 8.34763 8.59732 9.23083 10.85338 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.001852 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.550060 B =15115.908296 C =15861.363832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.513 6.513 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.125 3.875 16 H 0.102 0.898 17 C -0.151 4.151 18 C 0.097 3.903 19 N -0.641 5.641 20 C 0.527 3.473 21 O -0.505 6.505 22 C 0.111 3.889 23 H 0.117 0.883 24 C 0.105 3.895 25 N -0.738 5.738 26 C 0.706 3.294 27 O -0.580 6.580 28 N -0.715 5.715 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.434 0.566 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.492 -28.049 6.253 32.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.393 5.393 14 C -0.009 4.009 15 C 0.021 3.979 16 H 0.120 0.880 17 C -0.189 4.189 18 C -0.025 4.025 19 N -0.379 5.379 20 C 0.313 3.687 21 O -0.378 6.378 22 C 0.000 4.000 23 H 0.134 0.866 24 C -0.021 4.021 25 N -0.402 5.402 26 C 0.405 3.595 27 O -0.456 6.456 28 N -0.378 5.378 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.276 0.724 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 12.273 -28.425 5.342 31.419 hybrid contribution 2.470 1.345 -0.149 2.817 sum 14.743 -27.080 5.193 31.267 Atomic orbital electron populations 1.70032 1.05958 1.27360 1.46871 1.25009 0.95039 0.99071 0.94573 0.86106 0.79540 0.81868 0.77899 1.19625 1.20578 1.20575 1.22903 0.94924 0.91624 1.58877 0.90858 1.85466 1.04894 0.96350 1.96706 1.23519 1.06585 0.95230 1.04927 1.20315 0.86511 0.86201 0.75209 1.90728 1.15392 1.85499 1.47048 1.45840 1.09868 1.05128 1.78440 1.21429 0.95097 0.80401 1.03990 1.22936 0.96550 0.81790 0.96593 0.87982 1.23542 1.03777 0.95612 0.95920 1.23019 0.92380 0.98617 0.88507 1.49699 1.36812 1.10114 1.41318 1.20402 0.80044 0.88688 0.79516 1.90843 1.38884 1.70927 1.37157 1.21754 0.98408 0.91128 0.88681 0.86586 1.22237 0.88152 0.97277 0.94428 1.45050 1.29728 1.59041 1.06402 1.15850 0.81587 0.79401 0.82670 1.91025 1.42358 1.49629 1.62633 1.44849 1.27354 1.56527 1.09036 0.92221 0.89164 0.89194 0.76918 0.90211 0.90917 0.88454 0.88022 0.89794 0.89069 0.88578 0.89401 0.72372 0.72198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.86 7.85 -10.99 -0.09 9.78 16 12 O -0.51 -12.00 15.86 5.56 0.09 -11.91 16 13 N -0.74 -9.24 5.55 -60.30 -0.33 -9.58 16 14 C 0.12 1.36 5.39 -4.04 -0.02 1.34 16 15 C 0.12 0.81 4.09 -72.38 -0.30 0.51 16 16 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.15 -0.48 8.00 -26.35 -0.21 -0.69 16 18 C 0.10 0.15 8.40 -8.63 -0.07 0.08 16 19 N -0.64 -3.83 3.57 -177.59 -0.63 -4.47 16 20 C 0.53 4.53 7.13 -10.99 -0.08 4.46 16 21 O -0.51 -7.17 15.94 5.56 0.09 -7.08 16 22 C 0.11 0.59 4.01 -68.20 -0.27 0.32 16 23 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 24 C 0.11 0.40 7.70 -3.16 -0.02 0.38 16 25 N -0.74 -5.06 6.38 -64.70 -0.41 -5.47 16 26 C 0.71 7.68 8.92 -88.40 -0.79 6.89 16 27 O -0.58 -8.98 18.05 5.29 0.10 -8.88 16 28 N -0.72 -6.01 5.60 -59.33 -0.33 -6.34 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 32 H 0.40 3.45 8.48 -40.82 -0.35 3.11 16 33 H 0.08 1.24 7.05 -51.93 -0.37 0.87 16 34 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 35 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.10 0.43 7.95 -51.93 -0.41 0.01 16 37 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.09 0.36 7.72 -51.93 -0.40 -0.04 16 41 H 0.43 2.24 8.96 -40.82 -0.37 1.87 16 42 H 0.44 3.44 8.96 -40.82 -0.37 3.07 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -43.23 376.50 -9.29 -52.53 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.59 Total: 1.23 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.43 Total: 7.36 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.98 Total: -51.35 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: 0.27 Total: -27.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -43.23 -9.29 -52.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721992636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.805 kcal (2) G-P(sol) polarization free energy of solvation -43.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds