Wall clock time and date at job start Wed Apr 1 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29515 * 121.53385 * 2 1 4 4 S 1.69491 * 107.84321 * 180.02562 * 3 2 1 5 5 C 1.72019 * 96.02501 * 359.97438 * 4 3 2 6 6 C 1.37891 * 105.36630 * 0.02562 * 5 4 3 7 7 C 1.47348 * 123.08574 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99882 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00010 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00469 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47316 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46888 * 65.00084 * 11 10 9 13 13 C 1.53000 * 109.46964 * 184.99700 * 11 10 9 14 14 O 1.42904 * 109.47167 * 55.00206 * 13 11 10 15 15 N 1.46897 * 109.46952 * 304.99637 * 11 10 9 16 16 C 1.46903 * 110.99304 * 155.00361 * 15 11 10 17 17 C 1.50706 * 109.46680 * 179.97438 * 16 15 11 18 18 O 1.21288 * 120.00025 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99919 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99843 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00302 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99843 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00357 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99885 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47262 * 60.00327 * 24 22 20 26 26 H 1.48501 * 109.46951 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47288 * 299.99974 * 24 22 20 28 28 H 1.08994 * 109.47364 * 269.98075 * 1 2 3 29 29 H 1.09005 * 109.47231 * 29.97681 * 1 2 3 30 30 H 1.08998 * 109.47337 * 149.97495 * 1 2 3 31 31 H 1.07996 * 127.31318 * 179.97438 * 5 4 3 32 32 H 0.97003 * 119.99749 * 0.02562 * 9 7 6 33 33 H 1.09008 * 109.46537 * 300.00286 * 10 9 7 34 34 H 1.09001 * 109.46835 * 59.99382 * 10 9 7 35 35 H 1.09000 * 109.47253 * 174.99924 * 13 11 10 36 36 H 1.09003 * 109.47588 * 294.99981 * 13 11 10 37 37 H 0.96693 * 114.00274 * 180.02562 * 14 13 11 38 38 H 1.00895 * 111.00478 * 278.95346 * 15 11 10 39 39 H 1.09005 * 109.47506 * 299.99440 * 16 15 11 40 40 H 1.08998 * 109.47756 * 60.00345 * 16 15 11 41 41 H 0.97002 * 119.99912 * 0.02562 * 19 17 16 42 42 H 0.96996 * 120.00278 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8311 0.7027 -0.0007 5 6 3.6016 -1.0021 -0.0003 6 6 2.2351 -1.1868 -0.0002 7 6 1.6034 -2.5180 -0.0003 8 8 0.3912 -2.6159 -0.0007 9 7 2.3690 -3.6272 -0.0001 10 6 1.7411 -4.9508 -0.0008 11 6 2.8257 -6.0299 0.0003 12 1 3.3885 -5.9783 0.9322 13 6 2.1738 -7.4083 -0.1262 14 8 1.3424 -7.4373 -1.2881 15 7 3.7342 -5.8120 -1.1333 16 6 5.0571 -6.3925 -0.8666 17 6 5.9595 -6.1504 -2.0491 18 8 5.5418 -5.5527 -3.0183 19 7 7.2309 -6.5971 -2.0292 20 6 8.0516 -6.3773 -3.1051 21 1 7.6795 -5.8458 -3.9685 22 6 9.3623 -6.8384 -3.0848 23 7 9.8150 -7.4855 -2.0344 24 14 10.4808 -6.5382 -4.5505 25 1 10.6180 -5.0772 -4.7775 26 1 11.8179 -7.1256 -4.2812 27 1 9.8955 -7.1740 -5.7582 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 4.3655 -1.7654 -0.0009 32 1 3.3359 -3.5491 0.0006 33 1 1.1205 -5.0589 0.8888 34 1 1.1216 -5.0585 -0.8912 35 1 2.9486 -8.1699 -0.2147 36 1 1.5688 -7.6067 0.7586 37 1 0.8958 -8.2828 -1.4312 38 1 3.3427 -6.1814 -1.9867 39 1 5.4866 -5.9261 0.0201 40 1 4.9566 -7.4651 -0.7005 41 1 7.5650 -7.0748 -1.2538 42 1 10.7298 -7.8077 -2.0204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725526557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:01 Heat of formation + Delta-G solvation = -78.336879 kcal Electronic energy + Delta-G solvation = -27070.449467 eV Core-core repulsion = 22984.325127 eV Total energy + Delta-G solvation = -4086.124341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41340 -38.90883 -38.14680 -37.58216 -35.51776 -34.26533 -33.76499 -31.94779 -31.29006 -29.95450 -29.63876 -26.27794 -26.15585 -24.32755 -23.92858 -21.31022 -20.96447 -19.54937 -19.38338 -18.51386 -17.99570 -17.61463 -17.04366 -16.41301 -15.73058 -15.55108 -15.46025 -14.92602 -14.82662 -14.52338 -14.40339 -14.21750 -13.89998 -13.73552 -13.54335 -13.43442 -13.26017 -12.50693 -12.45730 -12.38804 -12.14812 -11.88101 -11.67857 -11.53514 -11.48520 -11.35181 -11.07533 -10.86885 -10.49178 -10.28449 -10.23236 -9.93472 -9.78220 -9.56389 -9.10013 -8.78562 -8.57467 -8.19323 -8.03186 -6.48291 -3.89326 0.26840 1.19526 1.58437 1.71729 3.10530 3.15520 3.21917 3.23169 3.26152 3.82362 3.85876 4.10295 4.31434 4.33297 4.65774 4.73156 4.79643 4.92940 5.06398 5.12901 5.15827 5.17357 5.23154 5.27105 5.38663 5.52251 5.61113 5.62059 5.69056 5.84766 5.97871 6.05650 6.17413 6.43062 6.52385 7.04901 7.38931 7.48951 7.52342 7.57471 7.99138 8.18370 8.53886 9.11333 9.46740 9.98004 10.69223 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009638 B = 0.002861 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.422685 B = 9785.194890 C =12176.666473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.165 3.835 3 N -0.475 5.475 4 S 0.291 5.709 5 C -0.165 4.165 6 C -0.212 4.212 7 C 0.584 3.416 8 O -0.540 6.540 9 N -0.703 5.703 10 C 0.139 3.861 11 C 0.074 3.926 12 H 0.094 0.906 13 C 0.047 3.953 14 O -0.565 6.565 15 N -0.660 5.660 16 C 0.047 3.953 17 C 0.439 3.561 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.194 0.806 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.381 0.619 38 H 0.364 0.636 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 5.075 10.321 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 N -0.296 5.296 4 S 0.446 5.554 5 C -0.315 4.315 6 C -0.234 4.234 7 C 0.369 3.631 8 O -0.419 6.419 9 N -0.354 5.354 10 C 0.014 3.986 11 C -0.038 4.038 12 H 0.112 0.888 13 C -0.033 4.033 14 O -0.370 6.370 15 N -0.294 5.294 16 C -0.086 4.086 17 C 0.224 3.776 18 O -0.465 6.465 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.211 0.789 32 H 0.243 0.757 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.186 0.814 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.610 8.633 9.833 18.880 hybrid contribution 0.475 -3.543 -0.180 3.580 sum -13.134 5.090 9.652 17.076 Atomic orbital electron populations 1.20911 0.85485 1.05112 1.04082 1.21444 0.99520 0.86715 0.93591 1.76468 1.00433 1.26254 1.26434 1.84126 1.10471 0.95782 1.64971 1.27537 0.99501 1.04852 0.99606 1.20408 0.92129 0.96198 1.14652 1.17239 0.86385 0.82978 0.76515 1.90700 1.13378 1.86691 1.51140 1.45635 1.10738 1.05177 1.73834 1.21239 0.94456 0.80142 1.02728 1.21999 0.93576 0.91967 0.96210 0.88760 1.22830 0.93898 0.98245 0.88374 1.86491 1.64673 1.39861 1.46009 1.60153 1.01506 1.62710 1.05036 1.21765 0.90392 0.97593 0.98826 1.19763 0.83399 0.85323 0.89108 1.90548 1.74978 1.45284 1.35647 1.41857 1.09452 1.50168 1.18446 1.19651 0.92071 1.34398 0.96893 0.87962 1.25255 0.97609 0.96624 0.98332 1.69595 1.17764 1.37853 1.29108 0.85925 0.78620 0.78851 0.80896 1.19829 1.20955 1.19892 0.89969 0.90974 0.87036 0.78872 0.75683 0.91363 0.90026 0.92975 0.93037 0.77218 0.81425 0.89669 0.93871 0.77517 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.51 36.00 0.34 -0.69 16 2 C 0.16 2.07 6.75 -83.20 -0.56 1.51 16 3 N -0.48 -6.08 11.97 32.50 0.39 -5.69 16 4 S 0.29 3.06 23.69 -107.50 -2.55 0.52 16 5 C -0.17 -1.73 10.79 30.61 0.33 -1.40 16 6 C -0.21 -2.61 5.86 -105.94 -0.62 -3.23 16 7 C 0.58 7.74 7.78 -12.56 -0.10 7.64 16 8 O -0.54 -8.20 13.75 5.26 0.07 -8.13 16 9 N -0.70 -8.28 5.36 -61.41 -0.33 -8.60 16 10 C 0.14 1.56 5.25 -4.04 -0.02 1.54 16 11 C 0.07 0.76 2.57 -67.72 -0.17 0.59 16 12 H 0.09 0.82 7.80 -51.93 -0.40 0.41 16 13 C 0.05 0.41 6.72 37.16 0.25 0.66 16 14 O -0.56 -5.60 12.05 -35.23 -0.42 -6.03 16 15 N -0.66 -9.28 5.31 -107.99 -0.57 -9.86 16 16 C 0.05 0.72 5.96 -4.97 -0.03 0.69 16 17 C 0.44 9.64 7.82 -10.98 -0.09 9.55 16 18 O -0.58 -15.02 15.78 5.55 0.09 -14.93 16 19 N -0.56 -13.49 5.29 -10.96 -0.06 -13.55 16 20 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 21 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 24 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 1.36 5.63 -51.93 -0.29 1.06 16 31 H 0.19 1.63 7.20 -52.49 -0.38 1.25 16 32 H 0.41 4.50 6.72 -40.82 -0.27 4.23 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 35 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 2.16 9.12 45.56 0.42 2.58 16 38 H 0.36 5.96 7.64 -39.29 -0.30 5.66 16 39 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.04 0.60 7.36 -51.93 -0.38 0.22 16 41 H 0.39 8.94 7.90 -40.82 -0.32 8.62 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -33.25 371.52 -7.32 -40.56 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -4.32 Total: 18.49 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.91 Total: 9.13 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.15 Total: -60.73 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.26 Total: -29.09 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.55 Total: 0.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.25 -7.32 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725526557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.773 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds