Wall clock time and date at job start Wed Apr 1 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47261 * 2 1 4 4 H 1.09007 * 109.46874 * 304.30031 * 3 2 1 5 5 C 1.52998 * 109.47266 * 184.30394 * 3 2 1 6 6 N 1.46510 * 109.46897 * 184.99773 * 5 3 2 7 7 C 1.34777 * 119.99568 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00011 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99678 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47072 * 179.97438 * 9 7 6 11 11 C 1.76205 * 100.00043 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00044 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00322 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99731 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00302 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47132 * 90.00442 * 15 13 11 17 17 H 1.48503 * 109.47313 * 210.00246 * 15 13 11 18 18 H 1.48496 * 109.47236 * 330.00268 * 15 13 11 19 19 N 1.46897 * 109.47187 * 64.30030 * 3 2 1 20 20 C 1.46895 * 110.99844 * 62.61215 * 19 3 2 21 21 C 1.50700 * 109.47493 * 178.39440 * 20 19 3 22 22 C 1.33391 * 122.53793 * 269.98462 * 21 20 19 23 23 S 1.75888 * 109.59195 * 179.77590 * 22 21 20 24 24 C 1.75887 * 90.96996 * 0.30621 * 23 22 21 25 25 C 1.50701 * 125.20193 * 179.97438 * 24 23 22 26 26 C 1.33386 * 109.59050 * 359.69003 * 24 23 22 27 27 H 1.09002 * 109.46995 * 174.92624 * 1 2 3 28 28 H 1.09001 * 109.46506 * 294.92663 * 1 2 3 29 29 H 1.08994 * 109.47086 * 54.92469 * 1 2 3 30 30 H 1.09004 * 109.47065 * 240.00260 * 2 1 3 31 31 H 1.08995 * 109.47680 * 119.99793 * 2 1 3 32 32 H 1.08996 * 109.47457 * 304.99491 * 5 3 2 33 33 H 1.09002 * 109.47145 * 65.00001 * 5 3 2 34 34 H 0.96993 * 119.99810 * 0.02562 * 6 5 3 35 35 H 1.09000 * 109.47332 * 299.99721 * 9 7 6 36 36 H 1.09002 * 109.47149 * 59.99830 * 9 7 6 37 37 H 0.96994 * 120.00102 * 179.97438 * 14 13 11 38 38 H 1.00905 * 111.00126 * 186.56850 * 19 3 2 39 39 H 1.09000 * 109.47420 * 58.39518 * 20 19 3 40 40 H 1.09001 * 109.47098 * 298.39184 * 20 19 3 41 41 H 1.07993 * 125.20315 * 0.04319 * 22 21 20 42 42 H 1.09004 * 109.47105 * 269.69720 * 25 24 23 43 43 H 1.08997 * 109.47211 * 149.69462 * 25 24 23 44 44 H 1.09001 * 109.47076 * 29.69193 * 25 24 23 45 45 H 1.08006 * 122.53219 * 180.26023 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6151 1.9781 -0.8490 5 6 3.5662 1.4439 -0.1083 6 7 4.0630 2.8169 0.0116 7 6 5.3865 3.0628 -0.0551 8 8 6.1661 2.1475 -0.2139 9 6 5.8976 4.4751 0.0687 10 16 7.7030 4.4767 -0.0595 11 6 8.0204 6.2014 0.1128 12 1 7.2001 6.8904 0.2495 13 6 9.3248 6.6743 0.0741 14 7 10.3247 5.8344 -0.0919 15 14 9.6613 8.5024 0.2574 16 1 9.8489 8.8296 1.6938 17 1 10.8910 8.8574 -0.4957 18 1 8.5118 9.2737 -0.2799 19 7 1.6371 2.1044 1.2480 20 6 2.2429 1.4454 2.4127 21 6 1.8394 2.1742 3.6685 22 6 2.5507 3.1841 4.1719 23 16 1.7718 3.7850 5.6299 24 6 0.4909 2.5897 5.4742 25 6 -0.6716 2.4339 6.4204 26 6 0.7027 1.8463 4.3871 27 1 -0.3633 -1.0237 -0.0909 28 1 -0.3632 0.4331 0.9320 29 1 -0.3633 0.5905 -0.8410 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9877 0.8340 0.6907 33 1 3.8623 1.0333 -1.0736 34 1 3.4395 3.5489 0.1390 35 1 5.4757 5.0855 -0.7297 36 1 5.6019 4.8851 1.0344 37 1 11.2362 6.1649 -0.1194 38 1 1.8680 3.0864 1.2273 39 1 3.3284 1.4622 2.3158 40 1 1.8987 0.4126 2.4656 41 1 3.4628 3.5759 3.7467 42 1 -0.4057 1.7313 7.2101 43 1 -1.5364 2.0566 5.8744 44 1 -0.9137 3.4011 6.8609 45 1 0.0374 1.0490 4.0900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732191316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:01 Heat of formation + Delta-G solvation = -38.154564 kcal Electronic energy + Delta-G solvation = -24630.688395 eV Core-core repulsion = 21092.599705 eV Total energy + Delta-G solvation = -3538.088690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97071 -39.73852 -38.31536 -35.09214 -34.60432 -33.83392 -32.16960 -31.33199 -28.89426 -27.70375 -27.55406 -26.90512 -24.20414 -22.72081 -21.74785 -20.81656 -19.88573 -19.83611 -18.36708 -17.86816 -17.35500 -17.28096 -16.90016 -16.55791 -15.94467 -15.84899 -15.63269 -15.04858 -14.82814 -14.65513 -14.48404 -14.44900 -14.18825 -13.93024 -13.87638 -13.43644 -13.33160 -13.18998 -13.03828 -12.91430 -12.78593 -12.64997 -12.61297 -12.28389 -12.23470 -11.80044 -11.73099 -11.60210 -11.47808 -11.16481 -11.00899 -10.30880 -10.20918 -9.57153 -9.44733 -9.24175 -8.69591 -8.36941 -6.15272 0.07802 0.73029 1.08954 1.24091 1.40745 1.44650 1.55219 1.55654 1.74242 2.20537 2.25664 2.97331 3.26026 3.33528 3.71058 3.82821 3.90108 4.00784 4.12976 4.20989 4.26310 4.32519 4.41809 4.45748 4.47944 4.53707 4.61660 4.69783 4.74303 4.76372 4.82838 4.95800 5.01343 5.12431 5.23526 5.25366 5.33388 5.38977 5.39617 5.51261 5.58403 5.61591 5.95934 6.17555 6.32628 6.40264 7.04448 7.17106 8.72299 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.002697 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.317917 B =10381.053918 C =12696.311937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C 0.090 3.910 4 H 0.105 0.895 5 C 0.084 3.916 6 N -0.712 5.712 7 C 0.535 3.465 8 O -0.564 6.564 9 C -0.130 4.130 10 S -0.150 6.150 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.258 1.258 19 N -0.661 5.661 20 C 0.115 3.885 21 C -0.092 4.092 22 C -0.228 4.228 23 S 0.080 5.920 24 C -0.182 4.182 25 C -0.082 4.082 26 C -0.132 4.132 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.342 0.658 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.100 -8.168 8.357 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C -0.021 4.021 4 H 0.123 0.877 5 C -0.041 4.041 6 N -0.366 5.366 7 C 0.321 3.679 8 O -0.442 6.442 9 C -0.281 4.281 10 S 0.077 5.923 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.182 1.182 19 N -0.292 5.292 20 C -0.016 4.016 21 C -0.105 4.105 22 C -0.364 4.364 23 S 0.345 5.655 24 C -0.299 4.299 25 C -0.140 4.140 26 C -0.162 4.162 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.931 -8.906 9.174 29.812 hybrid contribution 0.588 1.506 -0.846 1.825 sum -26.344 -7.400 8.328 28.602 Atomic orbital electron populations 1.21562 0.94013 1.01224 1.02397 1.21526 0.97513 0.93594 1.02554 1.21940 0.88949 0.97870 0.93330 0.87729 1.22201 0.97305 0.82615 1.01989 1.45699 1.05912 1.10410 1.74621 1.20043 0.82795 0.89807 0.75281 1.90698 1.56975 1.47115 1.49419 1.23364 1.01161 0.96987 1.06568 1.85589 0.99160 1.11976 1.95591 1.23188 0.96045 0.92363 1.57748 0.89957 1.26131 0.94725 1.04491 0.93824 1.70180 0.99943 1.37167 1.47479 0.84957 0.78203 0.76181 0.78677 1.19327 1.20262 1.18153 1.60745 1.61160 1.06667 1.00634 1.20634 0.96240 0.98254 0.86462 1.18888 0.95782 0.97372 0.98443 1.25570 1.05885 1.03655 1.01333 1.84349 1.19389 1.35868 1.25915 1.24842 1.02168 1.00690 1.02180 1.20426 0.93329 1.03178 0.97109 1.20065 0.98521 1.02513 0.95073 0.92741 0.92187 0.92780 0.90924 0.91785 0.92458 0.91841 0.75218 0.87261 0.87410 0.91973 0.83948 0.95183 0.88896 0.82637 0.89918 0.89159 0.90890 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.73 71.98 0.70 -0.80 16 2 C -0.11 -1.41 5.24 30.60 0.16 -1.25 16 3 C 0.09 1.24 2.72 44.92 0.12 1.37 16 4 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 5 C 0.08 1.77 4.56 86.38 0.39 2.17 16 6 N -0.71 -17.03 5.36 -463.05 -2.48 -19.52 16 7 C 0.53 19.39 7.85 87.66 0.69 20.08 16 8 O -0.56 -26.06 15.86 -3.03 -0.05 -26.10 16 9 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 10 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 11 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 12 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 13 C 0.01 0.74 5.49 84.86 0.47 1.21 16 14 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 15 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 19 N -0.66 -9.38 5.88 -495.58 -2.91 -12.29 16 20 C 0.11 1.93 5.16 85.56 0.44 2.37 16 21 C -0.09 -1.69 5.30 -20.92 -0.11 -1.80 16 22 C -0.23 -4.67 10.98 66.72 0.73 -3.94 16 23 S 0.08 1.51 23.33 -56.49 -1.32 0.19 16 24 C -0.18 -2.91 6.51 24.59 0.16 -2.75 16 25 C -0.08 -0.83 10.38 71.24 0.74 -0.09 16 26 C -0.13 -2.17 9.85 21.21 0.21 -1.97 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.75 7.88 -2.39 -0.02 0.73 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.84 6.28 -2.39 -0.02 0.82 16 32 H 0.06 1.39 6.62 -2.39 -0.02 1.37 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 7.21 7.19 -92.71 -0.67 6.54 16 35 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 36 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.34 4.83 7.33 -89.69 -0.66 4.17 16 39 H 0.03 0.63 6.25 -2.39 -0.01 0.62 16 40 H 0.09 1.42 6.35 -2.39 -0.02 1.41 16 41 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.07 396.06 -0.14 -75.21 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.32 Total: 22.73 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.79 Total: -20.54 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -5.11 Total: -87.66 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -6.84 SS G_CDS: -2.48 Total: -9.32 kcal Total: -75.07 -0.14 -75.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732191316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.058 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds