Wall clock time and date at job start Wed Apr 1 2020 00:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33386 * 125.20383 * 2 1 4 4 C 1.38418 * 114.92469 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.54489 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47450 * 270.00891 * 5 4 3 7 7 C 1.46899 * 110.99897 * 293.95079 * 6 5 4 8 8 C 1.46900 * 110.99910 * 169.99466 * 6 5 4 9 9 C 1.52995 * 109.47255 * 283.81579 * 8 6 5 10 10 H 1.08995 * 109.47420 * 64.16627 * 9 8 6 11 11 C 1.53006 * 109.47072 * 184.16454 * 9 8 6 12 12 N 1.46504 * 109.47283 * 304.16062 * 9 8 6 13 13 C 1.34771 * 119.99961 * 151.62828 * 12 9 8 14 14 O 1.21284 * 120.00141 * 0.02562 * 13 12 9 15 15 C 1.50700 * 119.99881 * 180.02562 * 13 12 9 16 16 S 1.80998 * 109.47189 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00014 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00072 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99784 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00238 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99826 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47233 * 59.99661 * 21 19 17 23 23 H 1.48502 * 109.47214 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47343 * 299.99674 * 21 19 17 25 25 C 1.33393 * 114.92012 * 0.02562 * 4 3 2 26 26 S 1.75883 * 125.20358 * 180.32278 * 2 1 3 27 27 H 1.08994 * 109.46940 * 89.99968 * 1 2 3 28 28 H 1.09004 * 109.47038 * 210.00001 * 1 2 3 29 29 H 1.08998 * 109.46852 * 329.99859 * 1 2 3 30 30 H 1.08006 * 122.53998 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.46450 * 30.00536 * 5 4 3 32 32 H 1.08996 * 109.47372 * 150.00265 * 5 4 3 33 33 H 1.08997 * 109.46884 * 65.45818 * 7 6 5 34 34 H 1.09001 * 109.47045 * 185.45843 * 7 6 5 35 35 H 1.09001 * 109.47150 * 305.46072 * 7 6 5 36 36 H 1.09003 * 109.47205 * 43.82092 * 8 6 5 37 37 H 1.09003 * 109.47008 * 163.81046 * 8 6 5 38 38 H 1.08996 * 109.47371 * 59.99716 * 11 9 8 39 39 H 1.09005 * 109.47194 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.46949 * 299.99837 * 11 9 8 41 41 H 0.97002 * 119.99657 * 331.63311 * 12 9 8 42 42 H 1.09008 * 109.46635 * 299.99653 * 15 13 12 43 43 H 1.08998 * 109.47719 * 59.99652 * 15 13 12 44 44 H 0.97001 * 120.00060 * 179.97438 * 20 19 17 45 45 H 1.08000 * 125.20368 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 4.6624 1.9482 -0.0001 6 7 4.9947 2.3085 -1.3849 7 6 5.6762 1.2009 -2.0679 8 6 5.8048 3.5332 -1.4302 9 6 4.9077 4.7475 -1.1823 10 1 4.4965 4.6957 -0.1742 11 6 5.7307 6.0286 -1.3322 12 7 3.8135 4.7534 -2.1564 13 6 2.6319 5.3186 -1.8392 14 8 2.4746 5.8229 -0.7474 15 6 1.5061 5.3241 -2.8410 16 16 0.0641 6.1499 -2.1236 17 6 -1.0656 6.0170 -3.4693 18 1 -0.7607 5.5310 -4.3842 19 6 -2.3469 6.5380 -3.3538 20 7 -2.7183 7.1309 -2.2388 21 14 -3.5443 6.3977 -4.7807 22 1 -3.7670 4.9649 -5.1010 23 1 -4.8361 7.0275 -4.4067 24 1 -2.9818 7.0888 -5.9686 25 6 3.9751 -0.4477 -0.0016 26 16 2.5210 -1.4371 -0.0081 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.8669 2.0895 0.0004 31 1 4.2566 2.8192 0.5146 32 1 5.5622 1.6094 0.5132 33 1 4.9914 0.3587 -2.1668 34 1 5.9969 1.5265 -3.0575 35 1 6.5460 0.8955 -1.4863 36 1 6.5756 3.4876 -0.6609 37 1 6.2743 3.6221 -2.4100 38 1 6.1420 6.0804 -2.3403 39 1 5.0917 6.8938 -1.1551 40 1 6.5449 6.0243 -0.6074 41 1 3.9394 4.3503 -3.0297 42 1 1.8208 5.8575 -3.7381 43 1 1.2458 4.2981 -3.1008 44 1 -3.6137 7.4953 -2.1582 45 1 4.9863 -0.8270 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733029926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:55 Heat of formation + Delta-G solvation = -6.543186 kcal Electronic energy + Delta-G solvation = -25278.954291 eV Core-core repulsion = 21742.236373 eV Total energy + Delta-G solvation = -3536.717918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.60973 -38.75603 -37.03401 -34.69309 -32.38296 -32.18958 -31.23631 -28.43342 -28.03300 -27.29313 -26.50020 -25.43039 -23.20090 -21.64895 -20.90224 -20.08233 -18.95268 -17.77834 -17.15813 -16.37075 -16.25820 -15.57037 -15.48449 -14.85380 -14.76038 -14.61641 -14.32639 -13.96137 -13.82406 -13.30911 -13.16772 -13.11187 -12.86878 -12.71282 -12.63604 -12.43751 -12.27942 -12.13105 -11.92571 -11.88926 -11.66476 -11.61252 -11.29566 -11.00763 -10.99554 -10.84313 -10.72788 -10.67790 -9.76599 -9.23851 -9.01669 -8.70284 -8.65515 -8.53425 -8.36093 -8.16790 -6.43358 -6.17108 -3.86506 0.94370 1.58225 1.92589 2.62640 3.13925 3.25702 3.27325 3.30510 3.36996 3.76268 3.91771 4.25507 4.59556 4.69922 4.80382 4.96782 5.06256 5.11407 5.17830 5.21832 5.22653 5.27091 5.36431 5.37090 5.40075 5.49135 5.49707 5.58093 5.63466 5.69934 5.73814 5.76668 5.99042 6.00594 6.07586 6.16631 6.20163 6.25893 6.36893 6.50596 6.73496 6.83247 6.92337 7.63938 7.94155 8.39796 8.80495 9.28260 10.90209 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.003416 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.843398 B = 8195.472235 C =10482.909005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.169 4.169 3 C -0.121 4.121 4 C -0.078 4.078 5 C 0.112 3.888 6 N -0.530 5.530 7 C 0.024 3.976 8 C 0.046 3.954 9 C 0.148 3.852 10 H 0.087 0.913 11 C -0.163 4.163 12 N -0.716 5.716 13 C 0.535 3.465 14 O -0.526 6.526 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.534 4.534 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.916 3.084 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.219 4.219 26 S 0.076 5.924 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.398 0.602 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.595 -15.497 2.485 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.286 4.286 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.017 4.017 6 N -0.253 5.253 7 C -0.124 4.124 8 C -0.082 4.082 9 C 0.042 3.958 10 H 0.105 0.895 11 C -0.222 4.222 12 N -0.369 5.369 13 C 0.321 3.679 14 O -0.401 6.401 15 C -0.302 4.302 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.504 5.504 21 Si 0.743 3.257 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.355 4.355 26 S 0.340 5.660 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.232 0.768 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 17.470 -16.048 4.157 24.083 hybrid contribution 0.601 0.394 -2.260 2.371 sum 18.071 -15.653 1.897 23.983 Atomic orbital electron populations 1.20384 0.87592 1.03249 1.03198 1.24469 1.00063 0.95071 1.08961 1.20063 0.92172 0.99868 1.02978 1.18673 0.94585 0.93516 1.02360 1.20823 0.95378 0.96340 0.89197 1.61851 1.44360 1.03598 1.15509 1.22453 0.96938 0.94681 0.98354 1.22498 0.94206 0.89538 1.01983 1.20826 0.87211 0.92974 0.94778 0.89516 1.22173 1.00010 0.98395 1.01638 1.45767 1.12305 1.60715 1.18090 1.20200 0.82564 0.76948 0.88166 1.90680 1.81675 1.44462 1.23282 1.23511 0.99871 1.05542 1.01304 1.85336 1.02450 1.73550 1.22019 1.22840 0.99765 1.44009 1.01662 0.91091 1.24965 0.97346 0.94576 0.96587 1.70011 1.19610 1.35572 1.25196 0.86263 0.79491 0.78517 0.81467 1.19968 1.20848 1.19976 1.25317 1.01399 0.96193 1.12599 1.84117 0.97190 1.10321 1.74354 0.90435 0.91603 0.89912 0.83828 0.89410 0.94064 0.90961 0.91503 0.95927 0.93309 0.90224 0.92554 0.91461 0.92104 0.76835 0.89602 0.89366 0.92215 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.38 36.01 0.37 -0.57 16 2 C -0.17 -2.06 6.51 -36.00 -0.23 -2.30 16 3 C -0.12 -1.60 9.85 -41.21 -0.41 -2.01 16 4 C -0.08 -0.89 4.79 -106.25 -0.51 -1.40 16 5 C 0.11 1.16 5.06 -4.98 -0.03 1.13 16 6 N -0.53 -5.15 4.42 -244.37 -1.08 -6.23 16 7 C 0.02 0.19 9.08 60.06 0.55 0.74 16 8 C 0.05 0.40 4.57 -3.83 -0.02 0.38 16 9 C 0.15 1.69 2.65 -67.93 -0.18 1.51 16 10 H 0.09 1.19 6.27 -51.93 -0.33 0.86 16 11 C -0.16 -1.70 9.51 37.16 0.35 -1.35 16 12 N -0.72 -9.66 4.79 -53.81 -0.26 -9.92 16 13 C 0.54 9.98 7.84 -10.99 -0.09 9.89 16 14 O -0.53 -11.79 15.47 5.55 0.09 -11.71 16 15 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 25 C -0.22 -2.20 9.50 29.04 0.28 -1.93 16 26 S 0.08 0.80 23.33 -107.50 -2.51 -1.71 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 31 H 0.09 1.02 6.71 -51.93 -0.35 0.67 16 32 H 0.04 0.37 8.04 -51.93 -0.42 -0.05 16 33 H 0.07 0.66 6.58 -51.93 -0.34 0.31 16 34 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 35 H 0.02 0.16 8.07 -51.93 -0.42 -0.26 16 36 H 0.05 0.37 7.99 -51.93 -0.42 -0.05 16 37 H 0.08 0.59 7.74 -51.93 -0.40 0.18 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.40 4.59 8.64 -40.82 -0.35 4.24 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -33.57 398.82 -10.94 -44.51 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.20 Total: 3.70 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 0.51 Total: -11.78 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.60 Total: -41.67 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -4.72 Total: -5.56 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.57 -10.94 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733029926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.972 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds