Wall clock time and date at job start Wed Apr 1 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47041 * 180.02562 * 13 12 11 15 15 N 1.46507 * 109.47062 * 180.02562 * 14 13 12 16 16 C 1.34781 * 119.99754 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99941 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99759 * 179.97438 * 16 15 14 19 19 S 1.80993 * 109.47091 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00264 * 179.97438 * 19 18 16 21 21 H 1.08008 * 119.99443 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00572 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99696 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00333 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47151 * 89.99924 * 24 22 20 26 26 H 1.48504 * 109.47138 * 210.00226 * 24 22 20 27 27 H 1.48498 * 109.47222 * 329.99776 * 24 22 20 28 28 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 29 29 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 30 30 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 31 31 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 32 32 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 34 34 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 35 35 H 1.09000 * 109.47466 * 300.00208 * 13 12 11 36 36 H 1.09005 * 109.46783 * 60.00399 * 13 12 11 37 37 H 1.09000 * 109.47119 * 300.00370 * 14 13 12 38 38 H 1.08997 * 109.46791 * 60.00646 * 14 13 12 39 39 H 0.97001 * 119.99896 * 359.97438 * 15 14 13 40 40 H 1.08999 * 109.46704 * 300.00193 * 18 16 15 41 41 H 1.09000 * 109.47281 * 59.99247 * 18 16 15 42 42 H 0.96995 * 120.00389 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 6 3.1404 -7.2670 0.0361 15 7 4.3162 -8.1411 0.0402 16 6 4.1606 -9.4799 0.0462 17 8 3.0473 -9.9610 0.0487 18 6 5.3701 -10.3789 0.0499 19 16 4.8362 -12.1083 0.0586 20 6 6.4040 -12.9125 0.0608 21 1 7.3114 -12.3266 0.0575 22 6 6.4730 -14.2987 0.0667 23 7 5.3671 -15.0126 0.0702 24 14 8.1351 -15.1512 0.0698 25 1 8.5760 -15.3711 1.4707 26 1 8.0219 -16.4590 -0.6247 27 1 9.1286 -14.3013 -0.6343 28 1 -0.3633 0.0054 1.0278 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5091 31 1 4.9238 1.7853 -0.8929 32 1 3.7415 -3.2769 0.0162 33 1 1.7659 -5.0834 0.9164 34 1 1.7653 -5.0927 -0.8636 35 1 4.1891 -5.6141 -0.8626 36 1 4.1904 -5.6049 0.9174 37 1 2.5427 -7.4584 0.9273 38 1 2.5418 -7.4669 -0.8527 39 1 5.2066 -7.7562 0.0378 40 1 5.9679 -10.1872 -0.8411 41 1 5.9686 -10.1792 0.9387 42 1 5.4152 -15.9814 0.0739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736885442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:24 Heat of formation + Delta-G solvation = -62.113557 kcal Electronic energy + Delta-G solvation = -25156.318381 eV Core-core repulsion = 21070.897536 eV Total energy + Delta-G solvation = -4085.420845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.87780 -39.95853 -39.23633 -38.06811 -36.50228 -34.79893 -33.80175 -32.46424 -31.90729 -31.14660 -29.27634 -27.69132 -25.69680 -25.30528 -23.38389 -22.34579 -21.80771 -20.59802 -20.41239 -19.94381 -18.45479 -17.85249 -16.99274 -16.84703 -16.47712 -16.28006 -16.11383 -15.62989 -15.41702 -14.83840 -14.83239 -14.56000 -14.24542 -13.92191 -13.71060 -13.20921 -13.14986 -13.08741 -12.92654 -12.74515 -12.56107 -12.39285 -12.05056 -12.04413 -11.43673 -11.09505 -11.06040 -10.96408 -10.79854 -10.69246 -10.44375 -9.85567 -9.73985 -9.48950 -9.10833 -8.99614 -8.97167 -8.27812 -6.54082 -6.25010 -3.96087 0.53779 1.72414 2.05968 2.44573 2.73448 2.99425 3.02619 3.19289 3.19537 3.25190 3.28800 3.64080 4.08496 4.16912 4.28424 4.46940 4.47029 4.53271 4.61752 4.92517 5.07398 5.10177 5.11946 5.19979 5.38544 5.39827 5.47784 5.50669 5.56424 5.67000 5.74573 5.81768 5.83570 5.94571 6.02613 6.07745 6.49673 6.73527 6.91116 7.19533 7.55737 7.56392 7.60324 8.31520 8.53262 9.20226 10.82428 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.001370 C = 0.001310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.637721 B =20437.412718 C =21375.152255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.120 3.880 3 N -0.488 5.488 4 C 0.416 3.584 5 O -0.441 6.441 6 N -0.557 5.557 7 H 0.422 0.578 8 C -0.089 4.089 9 C 0.597 3.403 10 O -0.514 6.514 11 N -0.730 5.730 12 C 0.123 3.877 13 C -0.143 4.143 14 C 0.124 3.876 15 N -0.741 5.741 16 C 0.531 3.469 17 O -0.515 6.515 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.409 0.591 32 H 0.394 0.606 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 33.133 -1.935 33.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.015 4.015 3 N -0.219 5.219 4 C 0.115 3.885 5 O -0.242 6.242 6 N -0.176 5.176 7 H 0.261 0.739 8 C -0.203 4.203 9 C 0.384 3.616 10 O -0.390 6.390 11 N -0.381 5.381 12 C -0.001 4.001 13 C -0.182 4.182 14 C 0.000 4.000 15 N -0.396 5.396 16 C 0.317 3.683 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.268 0.732 32 H 0.228 0.772 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.752 32.763 -1.329 33.004 hybrid contribution 4.500 -0.592 -0.451 4.562 sum 0.748 32.171 -1.780 32.229 Atomic orbital electron populations 1.20394 0.85695 1.04177 1.03621 1.21022 0.97032 0.85785 0.97669 1.70340 0.98577 1.30315 1.22656 1.20208 0.87480 0.78632 1.02201 1.84848 1.43212 1.61522 1.34627 1.43704 1.08700 1.07967 1.57209 0.73884 1.20763 0.83020 0.95168 1.21344 1.16619 0.85913 0.82321 0.76762 1.90884 1.15702 1.82725 1.49658 1.45858 1.09203 1.06724 1.76321 1.21317 0.96692 0.78322 1.03775 1.21984 0.98046 0.94637 1.03488 1.21094 0.88769 0.87088 1.03096 1.45963 1.09157 1.06143 1.78297 1.20327 0.91083 0.81729 0.75131 1.90716 1.26304 1.74629 1.47224 1.23529 0.98655 1.03324 1.04908 1.85425 1.11576 0.89601 1.96719 1.22864 0.92549 0.94001 1.59111 0.90932 1.24991 0.97733 0.96331 0.94494 1.70013 1.26915 1.06553 1.46730 0.86163 0.82229 0.78707 0.78361 1.20258 1.20718 1.19728 0.90182 0.90629 0.88765 0.73232 0.77250 0.90336 0.90341 0.90501 0.90482 0.91119 0.91119 0.76869 0.89221 0.89219 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.87 36.01 0.36 -0.26 16 2 C 0.12 1.07 7.14 -82.53 -0.59 0.48 16 3 N -0.49 -4.53 11.22 -10.83 -0.12 -4.65 16 4 C 0.42 2.72 9.43 -89.60 -0.84 1.88 16 5 O -0.44 -1.82 13.62 -17.30 -0.24 -2.05 16 6 N -0.56 -2.60 6.12 -10.91 -0.07 -2.67 16 7 H 0.42 0.48 8.32 -40.82 -0.34 0.14 16 8 C -0.09 -0.67 7.08 -81.97 -0.58 -1.25 16 9 C 0.60 4.93 7.78 -12.98 -0.10 4.83 16 10 O -0.51 -5.90 14.80 5.16 0.08 -5.83 16 11 N -0.73 -3.93 5.55 -61.71 -0.34 -4.27 16 12 C 0.12 0.76 5.67 -4.04 -0.02 0.74 16 13 C -0.14 -0.75 5.44 -26.73 -0.15 -0.90 16 14 C 0.12 1.19 5.67 -4.04 -0.02 1.17 16 15 N -0.74 -8.65 5.56 -60.29 -0.33 -8.99 16 16 C 0.53 9.41 7.85 -10.98 -0.09 9.32 16 17 O -0.51 -11.38 15.86 5.56 0.09 -11.29 16 18 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 24 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.78 6.46 -51.93 -0.34 0.44 16 31 H 0.41 -0.49 9.06 45.56 0.41 -0.08 16 32 H 0.39 0.95 7.71 -40.82 -0.31 0.63 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 40 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -39.83 382.04 -7.99 -47.83 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.69 Total: -1.41 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.62 Total: 0.47 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.13 Total: -45.73 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.07 Total: -19.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.83 -7.99 -47.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736885442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.287 kcal (2) G-P(sol) polarization free energy of solvation -39.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds