Wall clock time and date at job start Wed Apr 1 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29958 * 125.30638 * 2 1 4 4 O 1.41870 * 107.41555 * 180.02562 * 3 2 1 5 5 N 1.41869 * 106.39107 * 359.78345 * 4 3 2 6 6 C 1.29958 * 107.41485 * 0.36757 * 5 4 3 7 7 C 1.50694 * 125.30512 * 179.89374 * 6 5 4 8 8 C 1.50709 * 109.47283 * 269.69301 * 7 6 5 9 9 O 1.21287 * 119.99532 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00078 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99715 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46637 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47009 * 294.99094 * 12 11 10 14 14 C 1.53008 * 109.46508 * 174.99939 * 12 11 10 15 15 N 1.46497 * 109.47201 * 55.00007 * 12 11 10 16 16 C 1.34777 * 119.99525 * 204.99403 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08994 * 109.47391 * 269.99620 * 1 2 3 29 29 H 1.08998 * 109.47452 * 30.00101 * 1 2 3 30 30 H 1.09005 * 109.47303 * 149.99762 * 1 2 3 31 31 H 1.08995 * 109.47248 * 149.69455 * 7 6 5 32 32 H 1.09000 * 109.47472 * 29.69564 * 7 6 5 33 33 H 0.97000 * 120.00120 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47139 * 59.99673 * 11 10 8 35 35 H 1.08998 * 109.47035 * 299.99506 * 11 10 8 36 36 H 1.08995 * 109.47273 * 60.00263 * 14 12 11 37 37 H 1.08998 * 109.46811 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47201 * 299.99808 * 14 12 11 39 39 H 0.97000 * 120.00580 * 25.00149 * 15 12 11 40 40 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 41 41 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 42 42 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6247 -0.0006 5 7 3.5710 -0.7935 0.0042 6 6 2.3213 -1.1499 -0.0007 7 6 1.8210 -2.5713 -0.0004 8 6 1.6532 -3.0452 -1.4212 9 8 1.9147 -2.3018 -2.3432 10 7 1.2127 -4.2948 -1.6672 11 6 1.0502 -4.7556 -3.0484 12 6 0.5421 -6.1988 -3.0481 13 1 1.3002 -6.8507 -2.6141 14 6 0.2538 -6.6381 -4.4851 15 7 -0.6870 -6.2836 -2.2555 16 6 -1.0442 -7.4533 -1.6892 17 8 -0.3478 -8.4355 -1.8353 18 6 -2.3053 -7.5391 -0.8687 19 16 -2.5037 -9.2254 -0.2418 20 6 -4.0098 -9.0436 0.6543 21 1 -4.5086 -8.0860 0.6835 22 6 -4.5560 -10.1311 1.3218 23 7 -3.9490 -11.2985 1.2850 24 14 -6.1531 -9.9385 2.2712 25 1 -6.6311 -8.5371 2.1567 26 1 -7.1759 -10.8581 1.7113 27 1 -5.9218 -10.2668 3.7009 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.8612 -2.6186 0.5140 32 1 2.5401 -3.2096 0.5129 33 1 1.0039 -4.8895 -0.9298 34 1 2.0102 -4.7088 -3.5624 35 1 0.3315 -4.1171 -3.5622 36 1 1.1683 -6.5750 -5.0748 37 1 -0.1077 -7.6664 -4.4850 38 1 -0.5042 -5.9862 -4.9192 39 1 -1.2439 -5.4980 -2.1384 40 1 -2.2415 -6.8450 -0.0306 41 1 -3.1619 -7.2797 -1.4909 42 1 -4.3304 -12.0585 1.7517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737582878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:11 Heat of formation + Delta-G solvation = 8.907329 kcal Electronic energy + Delta-G solvation = -26297.065295 eV Core-core repulsion = 22214.724147 eV Total energy + Delta-G solvation = -4082.341148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96247 -40.31346 -39.39409 -36.59608 -34.99765 -34.08857 -33.81656 -32.51057 -31.69808 -30.13135 -29.18240 -28.70061 -26.51490 -25.56786 -23.13610 -21.99906 -21.57741 -20.65258 -20.49996 -18.18812 -17.72176 -17.46091 -16.81134 -16.67404 -16.30050 -15.92414 -15.76092 -15.08077 -14.88183 -14.79305 -14.59837 -14.37221 -14.18625 -13.89381 -13.63038 -13.38928 -13.29812 -13.14960 -13.02789 -12.68555 -12.62711 -12.18742 -12.15868 -12.07851 -11.95640 -11.38012 -11.29045 -11.13856 -11.10594 -11.03147 -10.83005 -10.44428 -9.89379 -9.67339 -9.51868 -9.18583 -9.12618 -8.33390 -6.59788 -6.30103 -4.01396 0.13281 1.46952 2.03080 2.19053 2.57668 2.75204 2.88387 2.93408 3.15406 3.21646 3.25479 3.38124 3.56494 3.98482 4.12099 4.21095 4.30743 4.31292 4.58480 4.69646 4.76774 4.83137 4.87689 4.96900 5.02805 5.05626 5.14727 5.22436 5.31929 5.36130 5.44225 5.54575 5.74811 5.80786 5.82087 6.00909 6.06023 6.43058 6.50897 6.90124 7.49716 7.52061 7.61736 8.26811 8.43196 9.15637 10.77261 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.002154 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.448873 B =12994.368785 C =14629.491336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.087 3.913 3 N -0.278 5.278 4 O 0.028 5.972 5 N -0.261 5.261 6 C 0.096 3.904 7 C -0.083 4.083 8 C 0.520 3.480 9 O -0.531 6.531 10 N -0.722 5.722 11 C 0.113 3.887 12 C 0.132 3.868 13 H 0.097 0.903 14 C -0.162 4.162 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.409 0.591 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 19.227 -4.587 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 N -0.023 5.023 4 O -0.113 6.113 5 N -0.004 5.004 6 C -0.088 4.088 7 C -0.124 4.124 8 C 0.304 3.696 9 O -0.407 6.407 10 N -0.375 5.375 11 C -0.011 4.011 12 C 0.026 3.974 13 H 0.115 0.885 14 C -0.221 4.221 15 N -0.394 5.394 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.244 0.756 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.276 18.760 -5.448 22.073 hybrid contribution -2.758 0.848 1.134 3.100 sum 7.518 19.608 -4.313 21.438 Atomic orbital electron populations 1.20598 0.84105 1.05599 1.04888 1.24531 1.00359 0.88764 0.95895 1.79933 0.89036 1.19554 1.13801 1.93398 1.20240 1.13169 1.84527 1.79914 1.17357 0.91545 1.11536 1.23732 0.90091 0.97615 0.97342 1.20363 1.05633 0.89373 0.97060 1.20048 0.77272 0.82039 0.90224 1.90795 1.49381 1.54605 1.45923 1.45909 1.67683 1.14221 1.09732 1.21772 1.02413 0.94232 0.82671 1.21145 0.87989 0.95124 0.93108 0.88542 1.22119 1.02236 1.03056 0.94678 1.46162 1.25868 1.12898 1.54468 1.20359 0.86703 0.82322 0.78705 1.90723 1.53050 1.35333 1.59493 1.23539 0.96941 1.08408 1.01600 1.85436 1.31785 1.01904 1.64184 1.22887 1.09390 0.99283 1.36866 0.90873 1.25000 0.98080 0.94461 0.96056 1.70021 1.38724 1.00532 1.40911 0.86117 0.81742 0.78354 0.79279 1.19615 1.20545 1.20545 0.88236 0.88936 0.88866 0.84912 0.85325 0.75554 0.89749 0.90461 0.91475 0.90947 0.92150 0.76747 0.89224 0.89206 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.05 36.00 0.36 -0.02 16 2 C 0.09 0.72 7.19 -82.38 -0.59 0.13 16 3 N -0.28 -3.11 12.98 33.74 0.44 -2.67 16 4 O 0.03 0.36 13.71 12.03 0.16 0.53 16 5 N -0.26 -3.04 12.98 33.74 0.44 -2.61 16 6 C 0.10 0.83 5.68 -82.38 -0.47 0.36 16 7 C -0.08 -0.42 5.87 -29.03 -0.17 -0.59 16 8 C 0.52 3.95 7.82 -10.98 -0.09 3.86 16 9 O -0.53 -6.32 16.03 5.55 0.09 -6.23 16 10 N -0.72 -4.41 5.39 -60.29 -0.32 -4.74 16 11 C 0.11 0.77 5.23 -4.04 -0.02 0.75 16 12 C 0.13 1.12 2.73 -67.93 -0.19 0.93 16 13 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 14 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 15 N -0.74 -7.13 4.52 -53.80 -0.24 -7.37 16 16 C 0.53 8.17 7.81 -10.98 -0.09 8.08 16 17 O -0.51 -10.06 15.52 5.55 0.09 -9.98 16 18 C -0.15 -2.68 6.16 36.01 0.22 -2.46 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.38 9.50 30.94 0.29 -14.09 16 21 H 0.07 1.85 7.80 -52.48 -0.41 1.44 16 22 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 23 N -0.87 -25.11 13.22 55.49 0.73 -24.37 16 24 Si 0.92 20.42 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.25 7.78 -51.93 -0.40 -0.15 16 31 H 0.13 0.17 7.78 -51.93 -0.40 -0.23 16 32 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.41 2.02 8.14 -40.82 -0.33 1.69 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.40 2.82 8.60 -40.82 -0.35 2.47 16 40 H 0.09 1.38 8.14 -51.91 -0.42 0.96 16 41 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -37.65 386.23 -6.16 -43.82 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.66 Total: -1.72 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.47 Total: -2.16 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.04 Total: -41.76 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.34 Total: -15.68 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.65 -6.16 -43.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737582878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.723 kcal (2) G-P(sol) polarization free energy of solvation -37.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds