Wall clock time and date at job start Wed Apr 1 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29958 * 125.30638 * 2 1 4 4 O 1.41870 * 107.41555 * 180.02562 * 3 2 1 5 5 N 1.41869 * 106.39107 * 359.78345 * 4 3 2 6 6 C 1.29958 * 107.41485 * 0.36757 * 5 4 3 7 7 C 1.50694 * 125.30512 * 179.89374 * 6 5 4 8 8 C 1.50709 * 109.47283 * 269.69301 * 7 6 5 9 9 O 1.21287 * 119.99532 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00078 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99715 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46637 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47009 * 294.99094 * 12 11 10 14 14 C 1.53008 * 109.46508 * 174.99939 * 12 11 10 15 15 N 1.46497 * 109.47201 * 55.00007 * 12 11 10 16 16 C 1.34777 * 119.99525 * 204.99403 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08994 * 109.47391 * 269.99620 * 1 2 3 29 29 H 1.08998 * 109.47452 * 30.00101 * 1 2 3 30 30 H 1.09005 * 109.47303 * 149.99762 * 1 2 3 31 31 H 1.08995 * 109.47248 * 149.69455 * 7 6 5 32 32 H 1.09000 * 109.47472 * 29.69564 * 7 6 5 33 33 H 0.97000 * 120.00120 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47139 * 59.99673 * 11 10 8 35 35 H 1.08998 * 109.47035 * 299.99506 * 11 10 8 36 36 H 1.08995 * 109.47273 * 60.00263 * 14 12 11 37 37 H 1.08998 * 109.46811 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47201 * 299.99808 * 14 12 11 39 39 H 0.97000 * 120.00580 * 25.00149 * 15 12 11 40 40 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 41 41 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 42 42 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6247 -0.0006 5 7 3.5710 -0.7935 0.0042 6 6 2.3213 -1.1499 -0.0007 7 6 1.8210 -2.5713 -0.0004 8 6 1.6532 -3.0452 -1.4212 9 8 1.9147 -2.3018 -2.3432 10 7 1.2127 -4.2948 -1.6672 11 6 1.0502 -4.7556 -3.0484 12 6 0.5421 -6.1988 -3.0481 13 1 1.3002 -6.8507 -2.6141 14 6 0.2538 -6.6381 -4.4851 15 7 -0.6870 -6.2836 -2.2555 16 6 -1.0442 -7.4533 -1.6892 17 8 -0.3478 -8.4355 -1.8353 18 6 -2.3053 -7.5391 -0.8687 19 16 -2.5037 -9.2254 -0.2418 20 6 -4.0098 -9.0436 0.6543 21 1 -4.5086 -8.0860 0.6835 22 6 -4.5560 -10.1311 1.3218 23 7 -3.9490 -11.2985 1.2850 24 14 -6.1531 -9.9385 2.2712 25 1 -6.6311 -8.5371 2.1567 26 1 -7.1759 -10.8581 1.7113 27 1 -5.9218 -10.2668 3.7009 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.8612 -2.6186 0.5140 32 1 2.5401 -3.2096 0.5129 33 1 1.0039 -4.8895 -0.9298 34 1 2.0102 -4.7088 -3.5624 35 1 0.3315 -4.1171 -3.5622 36 1 1.1683 -6.5750 -5.0748 37 1 -0.1077 -7.6664 -4.4850 38 1 -0.5042 -5.9862 -4.9192 39 1 -1.2439 -5.4980 -2.1384 40 1 -2.2415 -6.8450 -0.0306 41 1 -3.1619 -7.2797 -1.4909 42 1 -4.3304 -12.0585 1.7517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737582878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:09 Heat of formation + Delta-G solvation = -21.475602 kcal Electronic energy + Delta-G solvation = -26298.382798 eV Core-core repulsion = 22214.724147 eV Total energy + Delta-G solvation = -4083.658651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.63721 -41.08720 -40.39940 -37.48455 -35.65107 -34.87151 -34.53629 -34.47796 -32.69125 -30.77917 -29.91313 -29.63201 -27.60976 -27.14446 -23.80427 -22.84751 -22.18493 -21.57522 -21.23512 -19.83364 -18.55346 -18.08783 -17.86781 -17.52216 -17.01785 -16.83811 -16.66301 -16.54119 -16.30701 -15.88011 -15.34079 -15.22836 -14.94187 -14.73594 -14.53490 -14.23893 -14.08655 -13.99379 -13.83144 -13.65289 -13.23965 -13.13601 -13.10172 -12.95235 -12.88903 -12.87438 -12.60798 -12.52962 -12.14628 -12.02665 -11.67590 -11.65556 -11.12123 -11.10623 -10.88219 -10.21387 -10.18944 -10.13169 -8.60098 -8.30832 -6.07132 -0.57157 0.86488 1.32238 1.44317 1.45909 1.47449 1.52312 1.61663 1.68854 1.97757 2.14642 2.29771 2.35936 2.79541 3.04059 3.37654 3.45580 3.59979 3.76236 3.90890 4.05176 4.09063 4.15613 4.29242 4.37026 4.42031 4.50347 4.60413 4.61969 4.64470 4.72353 4.75501 4.77946 5.04079 5.10305 5.22442 5.36706 5.47191 5.52274 5.81040 6.24398 6.38167 6.56373 7.08084 7.11697 7.32151 8.78154 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.002154 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.448873 B =12994.368785 C =14629.491336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 N -0.310 5.310 4 O -0.019 6.019 5 N -0.295 5.295 6 C 0.106 3.894 7 C -0.081 4.081 8 C 0.525 3.475 9 O -0.577 6.577 10 N -0.712 5.712 11 C 0.122 3.878 12 C 0.138 3.862 13 H 0.081 0.919 14 C -0.160 4.160 15 N -0.708 5.708 16 C 0.539 3.461 17 O -0.562 6.562 18 C -0.130 4.130 19 S -0.154 6.154 20 C -0.541 4.541 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.995 3.005 25 H -0.254 1.254 26 H -0.279 1.279 27 H -0.276 1.276 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.181 0.819 32 H 0.147 0.853 33 H 0.418 0.582 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.417 0.583 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 20.746 -4.119 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 N -0.059 5.059 4 O -0.152 6.152 5 N -0.040 5.040 6 C -0.079 4.079 7 C -0.121 4.121 8 C 0.310 3.690 9 O -0.457 6.457 10 N -0.364 5.364 11 C -0.002 4.002 12 C 0.033 3.967 13 H 0.099 0.901 14 C -0.219 4.219 15 N -0.363 5.363 16 C 0.325 3.675 17 O -0.439 6.439 18 C -0.281 4.281 19 S 0.073 5.927 20 C -0.688 4.688 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.817 3.183 25 H -0.177 1.177 26 H -0.204 1.204 27 H -0.202 1.202 28 H 0.146 0.854 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.198 0.802 32 H 0.165 0.835 33 H 0.255 0.745 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.255 0.745 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.102 20.349 -4.983 22.462 hybrid contribution -2.079 0.399 0.888 2.296 sum 6.023 20.748 -4.095 21.989 Atomic orbital electron populations 1.20908 0.80699 1.06714 1.06953 1.25308 1.02172 0.87877 0.93076 1.79899 0.88680 1.21024 1.16293 1.93361 1.21742 1.14039 1.86058 1.79862 1.19361 0.91130 1.13654 1.24386 0.89310 0.99393 0.94779 1.20646 1.08472 0.87084 0.95905 1.20348 0.76233 0.81758 0.90642 1.90797 1.51491 1.55880 1.47512 1.45817 1.66950 1.13929 1.09748 1.21645 1.02565 0.92742 0.83229 1.21151 0.86727 0.96126 0.92681 0.90107 1.22092 1.03491 1.01405 0.94933 1.45816 1.26133 1.11658 1.52731 1.20002 0.85697 0.83113 0.78665 1.90723 1.54341 1.37433 1.61431 1.23385 0.98785 1.03031 1.02919 1.85635 1.32255 1.09618 1.65210 1.23236 1.09440 0.99758 1.36416 0.89710 1.26087 1.01922 0.94053 0.97183 1.70188 1.40799 1.01577 1.42333 0.84953 0.76785 0.79059 0.77462 1.17743 1.20438 1.20170 0.85390 0.88826 0.86694 0.80153 0.83486 0.74511 0.89816 0.89361 0.89836 0.94017 0.90630 0.74529 0.86384 0.87517 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.05 71.23 0.72 0.30 16 2 C 0.10 1.47 7.19 43.49 0.31 1.78 16 3 N -0.31 -7.00 12.98 -47.16 -0.61 -7.61 16 4 O -0.02 -0.51 13.71 70.20 0.96 0.45 16 5 N -0.29 -6.92 12.98 -47.16 -0.61 -7.54 16 6 C 0.11 1.65 5.68 43.49 0.25 1.90 16 7 C -0.08 -0.51 5.87 29.10 0.17 -0.34 16 8 C 0.52 6.30 7.82 87.66 0.69 6.99 16 9 O -0.58 -12.58 16.03 -3.05 -0.05 -12.63 16 10 N -0.71 -6.13 5.39 -463.04 -2.49 -8.62 16 11 C 0.12 1.28 5.23 86.38 0.45 1.73 16 12 C 0.14 2.01 2.73 45.00 0.12 2.14 16 13 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 14 C -0.16 -2.44 9.48 71.98 0.68 -1.76 16 15 N -0.71 -11.46 4.52 -442.52 -2.00 -13.46 16 16 C 0.54 15.55 7.81 87.66 0.68 16.23 16 17 O -0.56 -22.06 15.52 -3.04 -0.05 -22.10 16 18 C -0.13 -4.23 6.16 71.24 0.44 -3.79 16 19 S -0.15 -7.82 20.57 -56.49 -1.16 -8.98 16 20 C -0.54 -28.62 9.50 67.95 0.65 -27.98 16 21 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 22 C 0.01 0.66 5.49 84.86 0.47 1.12 16 23 N -0.91 -53.73 13.22 21.65 0.29 -53.44 16 24 Si 1.00 41.18 29.55 68.60 2.03 43.20 16 25 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 28 H 0.13 -0.09 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.11 0.05 7.78 -2.38 -0.02 0.03 16 31 H 0.18 -0.60 7.78 -2.39 -0.02 -0.62 16 32 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.42 2.40 8.14 -92.71 -0.75 1.64 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.42 3.96 8.60 -92.71 -0.80 3.16 16 40 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.11 3.15 8.14 -2.40 -0.02 3.13 16 42 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -88.43 386.23 1.45 -86.98 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -0.47 Total: 5.43 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.62 Total: -1.68 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -5.43 Total: -90.67 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: 0.87 Total: -34.28 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Total: -88.43 1.45 -86.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737582878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.505 kcal (2) G-P(sol) polarization free energy of solvation -88.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds