Wall clock time and date at job start Wed Apr 1 2020 00:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47229 * 269.99644 * 3 2 1 5 5 H 1.48500 * 109.47302 * 29.99819 * 3 2 1 6 6 H 1.48501 * 109.47039 * 149.99832 * 3 2 1 7 7 C 1.38802 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99566 * 359.97438 * 7 2 1 9 9 S 1.76191 * 120.00391 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00102 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47364 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99768 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99788 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47034 * 180.02562 * 14 13 11 16 16 C 1.53503 * 114.20667 * 175.00174 * 15 14 13 17 17 N 1.47072 * 87.98674 * 139.84940 * 16 15 14 18 18 C 1.34767 * 136.05857 * 152.83645 * 17 16 15 19 19 O 1.21289 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00277 * 180.02562 * 18 17 16 21 21 H 1.09002 * 110.60374 * 321.32754 * 20 18 17 22 22 C 1.54101 * 110.54907 * 84.10827 * 20 18 17 23 23 N 1.47054 * 103.86432 * 118.36412 * 22 20 18 24 24 C 1.33952 * 109.17509 * 0.39471 * 23 22 20 25 25 O 1.21593 * 123.04020 * 179.83650 * 24 23 22 26 26 N 1.33945 * 113.92024 * 359.56750 * 24 23 22 27 27 C 1.47073 * 87.88256 * 333.10207 * 17 16 15 28 28 H 0.96991 * 120.00398 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47610 * 59.99817 * 10 9 7 30 30 H 1.08999 * 109.47366 * 299.99480 * 10 9 7 31 31 H 0.96998 * 120.00319 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.47334 * 60.00142 * 14 13 11 33 33 H 1.09005 * 109.47137 * 299.99621 * 14 13 11 34 34 H 1.08996 * 113.28429 * 41.93036 * 15 14 13 35 35 H 1.08994 * 113.46631 * 25.06620 * 16 15 14 36 36 H 1.08999 * 113.51792 * 254.63916 * 16 15 14 37 37 H 1.08998 * 110.54827 * 237.19073 * 22 20 18 38 38 H 1.08995 * 110.54699 * 359.85553 * 22 20 18 39 39 H 0.96993 * 125.41531 * 180.22786 * 23 22 20 40 40 H 0.96997 * 125.41456 * 180.26908 * 26 24 23 41 41 H 1.08997 * 113.46506 * 141.67931 * 27 17 16 42 42 H 1.08998 * 113.45905 * 272.11690 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2323 0.0008 12 8 6.3442 -2.2961 0.0005 13 7 6.0459 -4.4945 0.0011 14 6 7.4909 -4.7355 0.0005 15 6 7.7566 -6.2422 0.0004 16 6 9.2395 -6.6198 -0.1223 17 7 8.9974 -7.6815 0.8662 18 6 9.5418 -8.8797 1.1563 19 8 10.4765 -9.2949 0.5044 20 6 8.9892 -9.7037 2.2907 21 1 8.7144 -9.0651 3.1302 22 6 7.7763 -10.5290 1.8190 23 7 8.1989 -11.9230 2.0203 24 6 9.4374 -11.9381 2.5302 25 8 10.0317 -12.9645 2.7980 26 7 9.9643 -10.7203 2.7130 27 6 7.8954 -6.8632 1.3944 28 1 -0.4850 0.8399 -0.0004 29 1 3.6441 -3.4313 -0.8893 30 1 3.6435 -3.4317 0.8907 31 1 5.4293 -5.2433 0.0018 32 1 7.9343 -4.2880 0.8900 33 1 7.9333 -4.2888 -0.8900 34 1 7.0976 -6.7959 -0.6684 35 1 9.9161 -5.8424 0.2325 36 1 9.5119 -6.9980 -1.1076 37 1 6.8992 -10.3001 2.4243 38 1 7.5722 -10.3408 0.7650 39 1 7.6647 -12.7070 1.8184 40 1 10.8485 -10.5378 3.0676 41 1 7.0264 -7.4480 1.6959 42 1 8.2105 -6.1514 2.1573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738036270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:14 Heat of formation + Delta-G solvation = -40.635124 kcal Electronic energy + Delta-G solvation = -26029.828478 eV Core-core repulsion = 21945.339009 eV Total energy + Delta-G solvation = -4084.489470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94470 -40.83579 -39.34093 -38.44423 -36.66720 -34.76538 -33.58076 -32.49744 -31.69161 -30.13461 -28.96605 -26.71005 -26.20555 -25.62289 -24.11030 -22.32801 -21.57289 -20.65957 -19.75726 -18.46426 -18.23241 -17.88241 -16.94010 -16.91728 -16.62385 -16.49442 -15.96038 -15.59532 -15.49314 -15.03919 -14.82717 -14.80343 -14.42764 -14.09498 -13.89456 -13.78077 -13.52624 -13.33901 -13.21059 -12.88260 -12.85917 -12.73690 -12.05096 -11.92500 -11.33003 -11.25518 -11.06115 -10.89368 -10.72581 -10.66342 -9.96244 -9.91703 -9.67180 -9.49745 -9.37519 -9.16265 -9.05219 -8.57352 -6.98884 -6.34623 -4.07094 1.72915 1.96653 2.30646 2.65470 2.68745 2.84452 3.15703 3.28530 3.33192 3.45166 3.50407 3.57094 3.62147 3.72369 4.13903 4.22581 4.27547 4.37919 4.55210 4.58404 4.64521 4.68717 4.75979 4.82758 4.95673 5.03141 5.04553 5.09149 5.15437 5.30995 5.43644 5.65718 5.67815 5.91860 6.33945 6.42739 6.57632 6.79046 6.99201 7.42179 7.44041 7.88199 8.08829 8.34790 8.35675 9.11470 10.74498 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.027710 B = 0.001639 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.227274 B =17084.351498 C =17808.428810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.133 3.867 15 C -0.136 4.136 16 C 0.115 3.885 17 N -0.646 5.646 18 C 0.532 3.468 19 O -0.519 6.519 20 C 0.110 3.890 21 H 0.117 0.883 22 C 0.106 3.894 23 N -0.738 5.738 24 C 0.706 3.294 25 O -0.581 6.581 26 N -0.716 5.716 27 C 0.099 3.901 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.434 0.566 40 H 0.435 0.565 41 H 0.086 0.914 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.002 -19.455 4.080 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C 0.009 3.991 15 C -0.155 4.155 16 C -0.008 4.008 17 N -0.382 5.382 18 C 0.319 3.681 19 O -0.393 6.393 20 C -0.001 4.001 21 H 0.135 0.865 22 C -0.020 4.020 23 N -0.402 5.402 24 C 0.405 3.595 25 O -0.458 6.458 26 N -0.378 5.378 27 C -0.023 4.023 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.234 0.766 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.277 0.723 40 H 0.277 0.723 41 H 0.104 0.896 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.057 -18.774 3.931 25.668 hybrid contribution -1.061 -0.663 -0.009 1.252 sum 15.996 -19.437 3.922 25.476 Atomic orbital electron populations 1.69929 1.05922 1.27829 1.47898 1.24715 0.94449 0.98980 0.93141 0.86738 0.81872 0.83295 0.79955 1.19203 1.19925 1.15933 1.22304 0.88224 0.97535 1.58981 0.89366 1.84818 1.09354 0.99948 1.97435 1.23278 0.93893 1.04518 1.05843 1.20298 0.90643 0.82206 0.75155 1.90718 1.58782 1.42203 1.47486 1.45922 1.07095 1.08178 1.78040 1.21142 0.82224 0.92497 1.03271 1.23193 0.97843 0.96550 0.97959 1.22983 0.95792 0.88063 0.93983 1.49562 1.35836 1.16340 1.36507 1.20317 0.82765 0.80060 0.85008 1.90795 1.27640 1.70014 1.50875 1.21766 0.89726 0.91944 0.96655 0.86529 1.22220 0.95681 0.81106 1.02985 1.45049 1.17091 1.08341 1.69686 1.15848 0.81798 0.83894 0.77947 1.91025 1.64171 1.32077 1.58495 1.44850 1.19339 1.04503 1.69130 1.23276 0.89360 0.92609 0.97097 0.91896 0.88464 0.88405 0.76555 0.90817 0.90614 0.86714 0.88835 0.89685 0.88337 0.89492 0.72340 0.72255 0.89593 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 13.97 55.49 0.78 -24.92 16 2 C 0.10 2.71 5.50 -17.43 -0.10 2.61 16 3 Si 0.86 20.99 27.74 -169.99 -4.72 16.28 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.52 -14.38 10.04 30.94 0.31 -14.07 16 8 H 0.09 2.52 8.03 -52.49 -0.42 2.10 16 9 S -0.14 -3.37 18.54 -107.50 -1.99 -5.37 16 10 C -0.12 -2.12 6.16 36.01 0.22 -1.90 16 11 C 0.53 7.88 7.85 -10.98 -0.09 7.80 16 12 O -0.52 -9.87 15.86 5.55 0.09 -9.79 16 13 N -0.74 -6.44 5.56 -60.29 -0.33 -6.78 16 14 C 0.13 0.87 5.59 -4.04 -0.02 0.85 16 15 C -0.14 -0.45 4.08 -90.23 -0.37 -0.82 16 16 C 0.11 0.52 8.20 -8.50 -0.07 0.45 16 17 N -0.65 -3.17 3.69 -185.35 -0.68 -3.86 16 18 C 0.53 3.82 7.18 -10.99 -0.08 3.74 16 19 O -0.52 -6.25 17.37 5.55 0.10 -6.15 16 20 C 0.11 0.50 4.00 -68.20 -0.27 0.23 16 21 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 22 C 0.11 0.33 7.70 -3.16 -0.02 0.30 16 23 N -0.74 -4.35 6.37 -64.70 -0.41 -4.76 16 24 C 0.71 6.89 8.92 -88.40 -0.79 6.10 16 25 O -0.58 -8.29 18.05 5.28 0.10 -8.20 16 26 N -0.72 -5.24 5.63 -59.32 -0.33 -5.58 16 27 C 0.10 0.23 7.99 -8.63 -0.07 0.16 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.40 2.27 8.47 -40.82 -0.35 1.92 16 32 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.09 0.25 7.72 -51.93 -0.40 -0.15 16 39 H 0.43 1.82 8.96 -40.82 -0.37 1.46 16 40 H 0.43 2.90 8.96 -40.82 -0.37 2.54 16 41 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 42 H 0.10 0.19 7.89 -51.93 -0.41 -0.22 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -40.74 376.36 -8.77 -49.50 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.67 Total: -1.52 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.34 Total: 5.46 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.99 Total: -45.89 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.28 Total: -24.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.72 Total: 16.28 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -40.74 -8.77 -49.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738036270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.867 kcal (2) G-P(sol) polarization free energy of solvation -40.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds