Wall clock time and date at job start Wed Apr 1 2020 00:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47229 * 269.99644 * 3 2 1 5 5 H 1.48500 * 109.47302 * 29.99819 * 3 2 1 6 6 H 1.48501 * 109.47039 * 149.99832 * 3 2 1 7 7 C 1.38802 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99566 * 359.97438 * 7 2 1 9 9 S 1.76191 * 120.00391 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00102 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47364 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99768 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99788 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47034 * 180.02562 * 14 13 11 16 16 C 1.53503 * 114.20667 * 175.00174 * 15 14 13 17 17 N 1.47072 * 87.98674 * 139.84940 * 16 15 14 18 18 C 1.34767 * 136.05857 * 152.83645 * 17 16 15 19 19 O 1.21289 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00277 * 180.02562 * 18 17 16 21 21 H 1.09002 * 110.60374 * 321.32754 * 20 18 17 22 22 C 1.54101 * 110.54907 * 84.10827 * 20 18 17 23 23 N 1.47054 * 103.86432 * 118.36412 * 22 20 18 24 24 C 1.33952 * 109.17509 * 0.39471 * 23 22 20 25 25 O 1.21593 * 123.04020 * 179.83650 * 24 23 22 26 26 N 1.33945 * 113.92024 * 359.56750 * 24 23 22 27 27 C 1.47073 * 87.88256 * 333.10207 * 17 16 15 28 28 H 0.96991 * 120.00398 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47610 * 59.99817 * 10 9 7 30 30 H 1.08999 * 109.47366 * 299.99480 * 10 9 7 31 31 H 0.96998 * 120.00319 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.47334 * 60.00142 * 14 13 11 33 33 H 1.09005 * 109.47137 * 299.99621 * 14 13 11 34 34 H 1.08996 * 113.28429 * 41.93036 * 15 14 13 35 35 H 1.08994 * 113.46631 * 25.06620 * 16 15 14 36 36 H 1.08999 * 113.51792 * 254.63916 * 16 15 14 37 37 H 1.08998 * 110.54827 * 237.19073 * 22 20 18 38 38 H 1.08995 * 110.54699 * 359.85553 * 22 20 18 39 39 H 0.96993 * 125.41531 * 180.22786 * 23 22 20 40 40 H 0.96997 * 125.41456 * 180.26908 * 26 24 23 41 41 H 1.08997 * 113.46506 * 141.67931 * 27 17 16 42 42 H 1.08998 * 113.45905 * 272.11690 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2323 0.0008 12 8 6.3442 -2.2961 0.0005 13 7 6.0459 -4.4945 0.0011 14 6 7.4909 -4.7355 0.0005 15 6 7.7566 -6.2422 0.0004 16 6 9.2395 -6.6198 -0.1223 17 7 8.9974 -7.6815 0.8662 18 6 9.5418 -8.8797 1.1563 19 8 10.4765 -9.2949 0.5044 20 6 8.9892 -9.7037 2.2907 21 1 8.7144 -9.0651 3.1302 22 6 7.7763 -10.5290 1.8190 23 7 8.1989 -11.9230 2.0203 24 6 9.4374 -11.9381 2.5302 25 8 10.0317 -12.9645 2.7980 26 7 9.9643 -10.7203 2.7130 27 6 7.8954 -6.8632 1.3944 28 1 -0.4850 0.8399 -0.0004 29 1 3.6441 -3.4313 -0.8893 30 1 3.6435 -3.4317 0.8907 31 1 5.4293 -5.2433 0.0018 32 1 7.9343 -4.2880 0.8900 33 1 7.9333 -4.2888 -0.8900 34 1 7.0976 -6.7959 -0.6684 35 1 9.9161 -5.8424 0.2325 36 1 9.5119 -6.9980 -1.1076 37 1 6.8992 -10.3001 2.4243 38 1 7.5722 -10.3408 0.7650 39 1 7.6647 -12.7070 1.8184 40 1 10.8485 -10.5378 3.0676 41 1 7.0264 -7.4480 1.6959 42 1 8.2105 -6.1514 2.1573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738036270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:13 Heat of formation + Delta-G solvation = -77.346533 kcal Electronic energy + Delta-G solvation = -26031.420405 eV Core-core repulsion = 21945.339009 eV Total energy + Delta-G solvation = -4086.081396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44356 -41.32245 -40.38338 -39.09142 -37.36991 -35.66617 -34.62752 -34.06390 -32.39064 -31.04573 -29.66582 -27.83366 -26.97916 -26.75467 -24.51359 -22.88852 -22.04692 -21.69987 -20.22402 -19.78804 -19.01359 -18.55420 -17.73317 -17.56808 -17.45525 -17.19064 -17.04754 -16.62175 -16.44281 -16.19074 -15.74563 -15.43421 -15.32729 -15.04873 -14.89415 -14.67168 -14.37723 -14.23517 -13.91980 -13.61156 -13.49012 -13.30123 -13.23914 -13.05642 -12.92883 -12.60224 -12.32948 -11.83712 -11.64940 -11.60772 -11.37350 -11.13336 -10.91616 -10.60368 -10.46394 -10.02283 -9.90170 -9.80045 -8.93544 -8.47662 -6.17285 1.05617 1.25121 1.34645 1.49842 1.52821 1.62751 1.67776 1.84799 2.04441 2.27370 2.32891 2.77360 2.91057 2.96405 3.20015 3.26710 3.34632 3.85706 3.93244 3.95985 4.10799 4.24460 4.27080 4.34253 4.42874 4.57939 4.58705 4.62784 4.65495 4.68204 4.82122 4.85487 4.90929 5.27802 5.52539 5.74681 5.84910 6.15423 6.16048 6.24812 6.57529 6.61391 6.94187 6.98309 7.31997 7.46275 8.64398 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.027710 B = 0.001639 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.227274 B =17084.351498 C =17808.428810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.235 1.235 7 C -0.526 4.526 8 H 0.064 0.936 9 S -0.182 6.182 10 C -0.112 4.112 11 C 0.535 3.465 12 O -0.566 6.566 13 N -0.707 5.707 14 C 0.134 3.866 15 C -0.117 4.117 16 C 0.104 3.896 17 N -0.642 5.642 18 C 0.529 3.471 19 O -0.580 6.580 20 C 0.112 3.888 21 H 0.156 0.844 22 C 0.106 3.894 23 N -0.730 5.730 24 C 0.694 3.306 25 O -0.639 6.639 26 N -0.717 5.717 27 C 0.102 3.898 28 H 0.276 0.724 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.420 0.580 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.093 0.907 39 H 0.441 0.559 40 H 0.434 0.566 41 H 0.121 0.879 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.550 -19.668 4.761 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.159 1.159 7 C -0.674 4.674 8 H 0.083 0.917 9 S 0.044 5.956 10 C -0.262 4.262 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.361 5.361 14 C 0.010 3.990 15 C -0.137 4.137 16 C -0.019 4.019 17 N -0.376 5.376 18 C 0.317 3.683 19 O -0.459 6.459 20 C 0.002 3.998 21 H 0.174 0.826 22 C -0.019 4.019 23 N -0.393 5.393 24 C 0.393 3.607 25 O -0.521 6.521 26 N -0.378 5.378 27 C -0.019 4.019 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.258 0.742 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.160 0.840 38 H 0.111 0.889 39 H 0.284 0.716 40 H 0.276 0.724 41 H 0.139 0.861 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.534 -18.983 4.609 25.592 hybrid contribution -0.895 -0.692 -0.278 1.165 sum 15.639 -19.675 4.331 25.504 Atomic orbital electron populations 1.70011 1.07306 1.28913 1.49351 1.25550 0.95222 1.02207 0.93057 0.85887 0.80767 0.79769 0.80068 1.18955 1.18700 1.15872 1.22480 0.90395 0.96624 1.57886 0.91743 1.84766 1.06243 1.06970 1.97587 1.23287 0.96288 0.99040 1.07636 1.19887 0.89156 0.83580 0.75308 1.90713 1.59321 1.44095 1.50293 1.45622 1.08640 1.06593 1.75262 1.21246 0.80219 0.94698 1.02869 1.23014 0.96971 0.94270 0.99412 1.23100 0.96886 0.88211 0.93689 1.49584 1.35992 1.15724 1.36312 1.20796 0.82027 0.80516 0.84946 1.90775 1.30476 1.71546 1.53105 1.22093 0.89167 0.91684 0.96822 0.82634 1.22573 0.96161 0.78804 1.04348 1.45065 1.15815 1.10148 1.68267 1.16198 0.82729 0.83755 0.78063 1.90968 1.65867 1.34173 1.61069 1.44903 1.19846 1.04644 1.68395 1.23499 0.89506 0.92518 0.96370 0.91498 0.86882 0.86418 0.74201 0.90787 0.91732 0.85129 0.88481 0.90799 0.83986 0.88868 0.71581 0.72405 0.86092 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.97 21.65 0.30 -53.70 16 2 C 0.04 2.53 5.50 84.86 0.47 3.00 16 3 Si 0.91 43.24 27.74 68.60 1.90 45.15 16 4 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.23 -11.02 6.74 99.48 0.67 -10.35 16 7 C -0.53 -28.96 10.04 67.96 0.68 -28.27 16 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 9 S -0.18 -8.51 18.54 -56.49 -1.05 -9.55 16 10 C -0.11 -3.52 6.16 71.24 0.44 -3.09 16 11 C 0.54 14.46 7.85 87.66 0.69 15.15 16 12 O -0.57 -20.72 15.86 -3.05 -0.05 -20.77 16 13 N -0.71 -9.58 5.56 -463.05 -2.57 -12.15 16 14 C 0.13 1.30 5.59 86.38 0.48 1.78 16 15 C -0.12 -0.30 4.08 -10.54 -0.04 -0.35 16 16 C 0.10 0.71 8.20 83.18 0.68 1.40 16 17 N -0.64 -4.29 3.69 -858.71 -3.17 -7.46 16 18 C 0.53 6.53 7.18 87.66 0.63 7.16 16 19 O -0.58 -13.94 17.37 -3.06 -0.05 -13.99 16 20 C 0.11 0.67 4.00 44.51 0.18 0.85 16 21 H 0.16 -0.24 8.14 -2.39 -0.02 -0.26 16 22 C 0.11 0.24 7.70 86.65 0.67 0.91 16 23 N -0.73 -7.28 6.37 -477.34 -3.04 -10.33 16 24 C 0.69 13.35 8.92 179.57 1.60 14.95 16 25 O -0.64 -19.03 18.05 -4.01 -0.07 -19.10 16 26 N -0.72 -9.89 5.63 -460.33 -2.59 -12.48 16 27 C 0.10 -0.04 7.99 83.09 0.66 0.62 16 28 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.11 3.24 8.14 -2.40 -0.02 3.22 16 30 H 0.12 3.28 8.14 -2.40 -0.02 3.26 16 31 H 0.42 2.59 8.47 -92.71 -0.79 1.80 16 32 H 0.07 0.80 7.83 -2.39 -0.02 0.78 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.13 0.03 8.14 -2.39 -0.02 0.02 16 35 H 0.10 0.61 8.10 -2.39 -0.02 0.59 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.14 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.09 0.16 7.72 -2.39 -0.02 0.15 16 39 H 0.44 3.05 8.96 -92.71 -0.83 2.22 16 40 H 0.43 5.83 8.96 -92.71 -0.83 5.00 16 41 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.11 -0.12 7.89 -2.39 -0.02 -0.14 16 Total: -1.00 -94.11 376.36 -4.65 -98.76 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -1.39 Total: 1.50 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 7.14 Total: 14.11 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -11.08 Total: -96.11 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.17 Total: -53.86 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.90 Total: 45.15 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.55 kcal Total: -94.11 -4.65 -98.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738036270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.413 kcal (2) G-P(sol) polarization free energy of solvation -94.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds