Wall clock time and date at job start Wed Apr 1 2020 01:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30649 * 128.64046 * 2 1 4 4 O 1.20838 * 109.61367 * 180.02562 * 3 2 1 5 5 N 1.20897 * 115.90858 * 359.69793 * 4 3 2 6 6 C 1.31598 * 109.18480 * 0.49243 * 5 4 3 7 7 C 1.48275 * 128.71372 * 179.81944 * 6 5 4 8 8 O 1.21505 * 119.99673 * 179.67465 * 7 6 5 9 9 N 1.34773 * 120.00434 * 359.68653 * 7 6 5 10 10 C 1.46490 * 120.00384 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47559 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46613 * 54.99525 * 11 10 9 13 13 C 1.53001 * 109.47108 * 295.00069 * 11 10 9 14 14 C 1.52996 * 109.47530 * 174.99686 * 11 10 9 15 15 N 1.46498 * 109.47059 * 184.99929 * 14 11 10 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 11 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 S 1.81000 * 109.47389 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99715 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00516 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46850 * 90.00589 * 24 22 20 26 26 H 1.48498 * 109.47329 * 210.00016 * 24 22 20 27 27 H 1.48499 * 109.47220 * 330.01003 * 24 22 20 28 28 H 1.09001 * 109.47269 * 269.97543 * 1 2 3 29 29 H 1.09003 * 109.47162 * 29.97186 * 1 2 3 30 30 H 1.08997 * 109.47189 * 149.97398 * 1 2 3 31 31 H 0.97002 * 119.99300 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47374 * 59.99359 * 10 9 7 33 33 H 1.09002 * 109.47263 * 299.99603 * 10 9 7 34 34 H 1.09001 * 109.47309 * 179.97438 * 13 11 10 35 35 H 1.08995 * 109.46988 * 299.99895 * 13 11 10 36 36 H 1.09001 * 109.46786 * 59.99727 * 13 11 10 37 37 H 1.09004 * 109.47066 * 65.00196 * 14 11 10 38 38 H 1.08994 * 109.46974 * 305.00344 * 14 11 10 39 39 H 0.97001 * 120.00384 * 0.02562 * 15 14 11 40 40 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 41 41 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 42 42 H 0.96991 * 119.99795 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0205 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6101 -0.5737 0.0048 6 6 2.4280 -1.1520 -0.0007 7 6 2.1034 -2.5988 -0.0011 8 8 0.9436 -2.9612 -0.0007 9 7 3.0947 -3.5119 -0.0017 10 6 2.7740 -4.9413 -0.0015 11 6 4.0698 -5.7548 -0.0029 12 1 4.6918 -5.4488 0.8383 13 6 4.8245 -5.5095 -1.3110 14 6 3.7379 -7.2430 0.1230 15 7 4.9792 -8.0118 0.2417 16 6 4.9318 -9.3526 0.3704 17 8 3.8616 -9.9232 0.3828 18 6 6.2084 -10.1430 0.4988 19 16 5.8155 -11.9030 0.6537 20 6 7.4416 -12.5692 0.7834 21 1 8.2983 -11.9122 0.7545 22 6 7.6214 -13.9383 0.9238 23 7 6.5773 -14.7391 0.9596 24 14 9.3453 -14.6447 1.0607 25 1 9.7471 -14.6964 2.4894 26 1 9.3650 -16.0160 0.4911 27 1 10.2942 -13.7833 0.3105 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.0205 -3.2225 -0.0022 32 1 2.1925 -5.1833 -0.8911 33 1 2.1936 -5.1834 0.8888 34 1 5.7479 -6.0887 -1.3118 35 1 4.2026 -5.8154 -2.1522 36 1 5.0610 -4.4492 -1.4006 37 1 3.1915 -7.5696 -0.7619 38 1 3.1242 -7.4046 1.0091 39 1 5.8352 -7.5556 0.2321 40 1 6.8242 -9.9850 -0.3866 41 1 6.7529 -9.8126 1.3835 42 1 6.7031 -15.6958 1.0574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738233867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:04 Heat of formation + Delta-G solvation = 28.849823 kcal Electronic energy + Delta-G solvation = -25605.862519 eV Core-core repulsion = 21524.386143 eV Total energy + Delta-G solvation = -4081.476376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.46080 -40.42703 -39.33199 -37.29977 -35.79257 -35.33769 -34.66516 -32.51056 -32.43861 -30.09653 -29.42296 -27.77764 -26.52043 -25.52914 -24.86982 -23.15382 -21.44312 -21.04547 -20.45644 -19.62673 -19.00960 -17.90815 -17.61316 -16.93040 -16.30255 -16.22537 -15.76340 -15.45840 -14.94718 -14.82031 -14.69330 -14.57910 -14.10420 -13.98123 -13.87354 -13.79177 -13.21828 -13.18050 -12.99331 -12.58806 -12.55759 -12.46691 -12.01857 -11.76739 -11.69295 -11.48113 -11.35088 -11.08029 -11.04532 -10.99925 -10.91200 -10.77870 -9.83952 -9.78522 -9.46836 -9.09206 -8.95839 -8.26227 -6.52436 -6.23648 -3.94498 0.14777 0.73189 1.99742 2.32821 2.76705 2.83389 2.99580 3.05046 3.20841 3.24811 3.28043 3.32138 3.66559 4.06525 4.16499 4.18445 4.31153 4.35304 4.40284 4.52699 4.87362 4.92031 5.01487 5.08413 5.11609 5.14947 5.21176 5.35546 5.39354 5.43442 5.55363 5.59245 5.66270 5.80760 5.84219 5.87422 6.10198 6.52427 6.65790 7.32076 7.57425 7.62923 7.84745 8.33092 8.55714 9.21700 10.83777 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.035890 B = 0.001460 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.965880 B =19175.418560 C =19774.881702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.356 5.356 4 O 0.345 5.655 5 N -0.320 5.320 6 C -0.045 4.045 7 C 0.607 3.393 8 O -0.507 6.507 9 N -0.707 5.707 10 C 0.125 3.875 11 C -0.116 4.116 12 H 0.087 0.913 13 C -0.152 4.152 14 C 0.129 3.871 15 N -0.738 5.738 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.409 0.591 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 31.820 -2.987 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 N -0.081 5.081 4 O 0.119 5.881 5 N -0.041 5.041 6 C -0.211 4.211 7 C 0.389 3.611 8 O -0.380 6.380 9 N -0.359 5.359 10 C 0.002 3.998 11 C -0.135 4.135 12 H 0.105 0.895 13 C -0.210 4.210 14 C 0.004 3.996 15 N -0.393 5.393 16 C 0.318 3.682 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.244 0.756 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.950 31.055 -2.954 32.454 hybrid contribution 2.677 0.089 0.103 2.681 sum -6.273 31.144 -2.851 31.897 Atomic orbital electron populations 1.20383 0.82733 1.05438 1.04947 1.26289 1.00478 0.84998 0.98459 1.75108 0.91075 1.23902 1.18052 1.85079 1.23380 1.16474 1.63191 1.75351 1.23018 0.93031 1.12654 1.26049 0.88271 0.98391 1.08340 1.16392 0.85622 0.81480 0.77641 1.90859 1.18770 1.79457 1.48947 1.45808 1.09586 1.06714 1.73824 1.21476 0.96996 0.77405 1.03919 1.21612 0.96591 0.95199 1.00113 0.89481 1.21917 1.00928 1.01591 0.96523 1.21146 0.87505 0.88098 1.02814 1.45960 1.08929 1.07049 1.77402 1.20314 0.91291 0.81396 0.75215 1.90713 1.31063 1.69463 1.47745 1.23530 0.97564 1.04472 1.04852 1.85412 1.11610 0.90731 1.95579 1.22868 0.92351 0.94942 1.58326 0.90922 1.24992 0.98108 0.95907 0.94539 1.70015 1.29439 1.04330 1.46462 0.86167 0.82548 0.78308 0.78465 1.20266 1.20731 1.19707 0.88634 0.89267 0.87859 0.75555 0.90003 0.90026 0.91611 0.91751 0.92548 0.91032 0.91127 0.76799 0.89218 0.89223 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.22 36.01 0.37 0.02 16 2 C 0.06 0.45 7.79 -79.32 -0.62 -0.17 16 3 N -0.36 -2.71 12.22 33.76 0.41 -2.30 16 4 O 0.34 2.55 11.65 27.27 0.32 2.87 16 5 N -0.32 -2.37 12.13 33.49 0.41 -1.96 16 6 C -0.04 -0.34 7.56 -80.07 -0.61 -0.95 16 7 C 0.61 4.97 7.85 -12.13 -0.10 4.88 16 8 O -0.51 -5.34 15.96 5.36 0.09 -5.26 16 9 N -0.71 -4.43 5.28 -61.12 -0.32 -4.75 16 10 C 0.13 0.80 5.06 -4.05 -0.02 0.78 16 11 C -0.12 -0.70 2.46 -90.62 -0.22 -0.93 16 12 H 0.09 0.46 8.14 -51.92 -0.42 0.03 16 13 C -0.15 -0.86 8.94 37.16 0.33 -0.53 16 14 C 0.13 1.26 5.06 -4.04 -0.02 1.24 16 15 N -0.74 -8.72 5.28 -60.30 -0.32 -9.04 16 16 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 17 O -0.52 -11.37 15.86 5.55 0.09 -11.28 16 18 C -0.15 -2.99 6.16 36.01 0.22 -2.76 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.51 7.31 -51.93 -0.38 0.13 16 31 H 0.41 1.97 7.51 -40.82 -0.31 1.66 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.39 7.18 -51.93 -0.37 0.01 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.26 7.18 -51.93 -0.37 -0.12 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.52 7.66 -40.82 -0.31 3.21 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -35.52 381.37 -6.15 -41.67 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.52 Total: -0.91 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.55 Total: -1.91 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.91 Total: -43.28 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.49 Total: -13.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.52 -6.15 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738233867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.525 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds