Wall clock time and date at job start Wed Apr 1 2020 00:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47203 * 269.99700 * 3 2 1 5 5 H 1.48506 * 109.46989 * 29.99699 * 3 2 1 6 6 H 1.48506 * 109.47313 * 149.99599 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 C 1.30999 * 120.00002 * 125.00219 * 15 14 13 17 17 C 1.50703 * 120.00002 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47120 * 124.99517 * 17 16 15 19 19 C 1.34773 * 119.99928 * 180.02562 * 18 17 16 20 20 O 1.21279 * 120.00023 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99971 * 180.02562 * 19 18 17 22 22 H 1.09002 * 110.49116 * 40.69626 * 21 19 18 23 23 C 1.54104 * 110.54675 * 277.99780 * 21 19 18 24 24 N 1.47057 * 103.85991 * 241.40474 * 23 21 19 25 25 C 1.33948 * 109.18027 * 0.02562 * 24 23 21 26 26 O 1.21582 * 123.04149 * 180.02562 * 25 24 23 27 27 N 1.34252 * 113.96019 * 359.91737 * 25 24 23 28 28 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 31 31 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 33 33 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 34 34 H 1.07996 * 119.99901 * 304.99623 * 15 14 13 35 35 H 1.07996 * 120.00097 * 359.97438 * 16 15 14 36 36 H 1.08997 * 109.47209 * 244.99700 * 17 16 15 37 37 H 1.09002 * 109.46637 * 4.99745 * 17 16 15 38 38 H 0.97003 * 119.99849 * 0.02562 * 18 17 16 39 39 H 1.08999 * 110.54643 * 0.02562 * 23 21 19 40 40 H 1.08992 * 110.54592 * 122.81213 * 23 21 19 41 41 H 0.96998 * 125.40789 * 179.97438 * 24 23 21 42 42 H 0.97009 * 125.58299 * 180.08342 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.4849 -8.6838 0.0046 16 6 3.5677 -9.6029 0.9343 17 6 4.7225 -10.5712 0.9359 18 7 5.3990 -10.5225 2.2345 19 6 6.4685 -11.3089 2.4671 20 8 6.8707 -12.0572 1.6015 21 6 7.1640 -11.2592 3.8031 22 1 6.4349 -11.1899 4.6105 23 6 8.1460 -10.0728 3.8579 24 7 9.4562 -10.7091 4.0608 25 6 9.2960 -12.0378 4.1177 26 8 10.2205 -12.8106 4.2801 27 7 8.0224 -12.4397 3.9815 28 1 -0.4850 0.8400 -0.0004 29 1 3.1238 -3.7310 0.8925 30 1 3.1252 -3.7318 -0.8874 31 1 3.8010 -6.1835 0.0043 32 1 1.7209 -7.8747 0.8928 33 1 1.7228 -7.8757 -0.8871 34 1 4.2439 -8.6202 -0.7610 35 1 2.8089 -9.6663 1.7002 36 1 4.3509 -11.5802 0.7574 37 1 5.4261 -10.2987 0.1492 38 1 5.0770 -9.9242 2.9269 39 1 8.1302 -9.5195 2.9189 40 1 7.9061 -9.4160 4.6939 41 1 10.3020 -10.2411 4.1400 42 1 7.7161 -13.3601 3.9977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738454353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:41 Heat of formation + Delta-G solvation = -69.709157 kcal Electronic energy + Delta-G solvation = -25134.902090 eV Core-core repulsion = 21049.151876 eV Total energy + Delta-G solvation = -4085.750215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85734 -39.84954 -39.28214 -36.99123 -36.57709 -35.08513 -33.57344 -33.07772 -32.47584 -30.41918 -29.52919 -27.55469 -25.55894 -24.85697 -23.58009 -22.32310 -21.36659 -20.71360 -20.05247 -18.62643 -18.20612 -17.93249 -16.99824 -16.66339 -16.35918 -16.25927 -16.13815 -15.62924 -15.41445 -15.02309 -14.84839 -14.59446 -14.43420 -14.25360 -14.03948 -13.86340 -13.63629 -13.29027 -13.06789 -12.90181 -12.69509 -12.54478 -11.87891 -11.66716 -11.10668 -11.07248 -10.97561 -10.81135 -10.76374 -10.18042 -9.96487 -9.86748 -9.68989 -9.51077 -9.38549 -9.11904 -8.98421 -8.29622 -6.55723 -6.26463 -3.97575 1.33471 1.79183 2.19334 2.45249 2.77878 2.99558 3.02109 3.18676 3.24959 3.29185 3.40323 3.56656 3.69043 3.92347 4.12090 4.14063 4.15759 4.48356 4.56926 4.74312 4.83733 4.97197 4.98032 5.08857 5.10596 5.15795 5.32323 5.47989 5.65609 5.69132 5.81432 6.03489 6.06456 6.13073 6.42513 6.49103 6.56250 6.75067 6.82870 7.49293 7.54629 7.59162 8.08265 8.30269 8.50463 9.18949 10.80934 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.001512 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.597740 B =18517.087477 C =20038.835897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.146 3.854 15 C -0.137 4.137 16 C -0.168 4.168 17 C 0.150 3.850 18 N -0.721 5.721 19 C 0.500 3.500 20 O -0.520 6.520 21 C 0.104 3.896 22 H 0.119 0.881 23 C 0.104 3.896 24 N -0.738 5.738 25 C 0.706 3.294 26 O -0.581 6.581 27 N -0.716 5.716 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.406 0.594 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.434 0.566 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.627 -21.773 7.950 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.392 5.392 14 C 0.023 3.977 15 C -0.156 4.156 16 C -0.188 4.188 17 C 0.027 3.973 18 N -0.374 5.374 19 C 0.283 3.717 20 O -0.394 6.394 21 C -0.007 4.007 22 H 0.136 0.864 23 C -0.022 4.022 24 N -0.402 5.402 25 C 0.404 3.596 26 O -0.458 6.458 27 N -0.379 5.379 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.277 0.723 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 12.208 -22.958 7.392 27.033 hybrid contribution 2.210 1.548 0.193 2.705 sum 14.418 -21.411 7.585 26.904 Atomic orbital electron populations 1.70014 1.05958 1.27510 1.46751 1.24991 0.95029 0.99043 0.94486 0.86167 0.79394 0.81545 0.78380 1.20254 1.20729 1.19699 1.22863 0.94905 0.91623 1.59100 0.90903 1.85415 1.04857 0.96365 1.96733 1.23531 1.06637 0.95252 1.04967 1.20347 0.86502 0.86286 0.75086 1.90713 1.15374 1.85555 1.47398 1.45971 1.10057 1.05001 1.78157 1.20306 0.94115 0.80285 1.03033 1.23094 0.98768 0.95222 0.98505 1.22893 0.98702 0.97013 1.00170 1.20384 0.92423 0.99432 0.85085 1.45986 1.30922 1.43322 1.17165 1.20817 0.80546 0.80678 0.89618 1.90788 1.64265 1.38520 1.45828 1.21849 0.95021 0.87532 0.96330 0.86352 1.22266 0.81913 0.94032 1.03974 1.45050 1.09928 1.06074 1.79107 1.15934 0.83295 0.83030 0.77305 1.91020 1.41754 1.55685 1.57309 1.44896 1.06112 1.08649 1.78227 0.92142 0.89181 0.89173 0.76701 0.90967 0.90432 0.86250 0.85981 0.90253 0.90688 0.75942 0.89388 0.88267 0.72335 0.72225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.57 13.22 55.49 0.73 -24.84 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 11 C 0.53 9.09 7.85 -10.99 -0.09 9.00 16 12 O -0.52 -11.03 15.86 5.56 0.09 -10.94 16 13 N -0.74 -8.30 5.55 -61.47 -0.34 -8.64 16 14 C 0.15 1.35 6.11 -5.19 -0.03 1.32 16 15 C -0.14 -0.78 9.24 -36.02 -0.33 -1.11 16 16 C -0.17 -0.74 9.24 -36.02 -0.33 -1.07 16 17 C 0.15 0.69 6.11 -5.19 -0.03 0.66 16 18 N -0.72 -2.41 5.55 -61.47 -0.34 -2.75 16 19 C 0.50 2.82 6.94 -10.98 -0.08 2.74 16 20 O -0.52 -5.49 16.58 5.56 0.09 -5.39 16 21 C 0.10 0.34 4.16 -68.20 -0.28 0.06 16 22 H 0.12 0.00 8.14 -51.93 -0.42 -0.43 16 23 C 0.10 0.24 7.70 -3.16 -0.02 0.22 16 24 N -0.74 -4.00 6.37 -64.62 -0.41 -4.41 16 25 C 0.71 6.51 8.92 -88.13 -0.79 5.73 16 26 O -0.58 -8.08 18.05 5.29 0.10 -7.99 16 27 N -0.72 -4.64 5.64 -59.25 -0.33 -4.98 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 30 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 31 H 0.40 3.31 8.46 -40.82 -0.35 2.96 16 32 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.59 7.84 -52.49 -0.41 0.17 16 35 H 0.12 0.47 7.84 -52.49 -0.41 0.06 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.41 7.79 -51.93 -0.40 0.01 16 38 H 0.41 0.26 8.46 -40.82 -0.35 -0.09 16 39 H 0.09 0.19 7.72 -51.93 -0.40 -0.21 16 40 H 0.10 -0.04 8.14 -51.93 -0.42 -0.47 16 41 H 0.43 1.71 8.96 -40.82 -0.37 1.34 16 42 H 0.44 2.56 8.96 -40.82 -0.37 2.19 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -41.11 384.50 -8.96 -50.07 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.54 Total: -0.23 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.57 Total: 2.30 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.69 Total: -45.61 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.28 Total: -24.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.11 -8.96 -50.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738454353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.641 kcal (2) G-P(sol) polarization free energy of solvation -41.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds