Wall clock time and date at job start Wed Apr 1 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35564 * 125.82491 * 2 1 4 4 N 1.35402 * 107.16296 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.43914 * 179.97438 * 4 3 2 6 6 C 1.36669 * 107.11719 * 0.02562 * 4 3 2 7 7 C 1.47416 * 125.86051 * 180.02562 * 6 4 3 8 8 O 1.21605 * 120.00240 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99812 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99880 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47194 * 325.00351 * 10 9 7 12 12 C 1.53004 * 109.46876 * 85.00192 * 10 9 7 13 13 O 1.42903 * 109.46984 * 64.99959 * 12 10 9 14 14 C 1.52992 * 109.47240 * 205.00358 * 10 9 7 15 15 N 1.46499 * 109.47267 * 55.00209 * 14 10 9 16 16 C 1.34784 * 119.99971 * 180.02562 * 15 14 10 17 17 O 1.21274 * 119.99897 * 359.72827 * 16 15 14 18 18 C 1.50695 * 119.99635 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00155 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99670 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99898 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47184 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47541 * 119.99901 * 24 22 20 27 27 H 1.48497 * 109.47123 * 239.99909 * 24 22 20 28 28 N 1.31610 * 108.27671 * 0.26082 * 6 4 3 29 29 H 1.08999 * 109.47242 * 89.99695 * 1 2 3 30 30 H 1.08997 * 109.47309 * 209.99723 * 1 2 3 31 31 H 1.09005 * 109.47384 * 329.99840 * 1 2 3 32 32 H 1.08001 * 126.41972 * 0.07293 * 3 2 1 33 33 H 0.96994 * 119.99731 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47182 * 184.99865 * 12 10 9 35 35 H 1.08999 * 109.47165 * 304.99910 * 12 10 9 36 36 H 0.96696 * 113.99498 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.47330 * 295.00112 * 14 10 9 38 38 H 1.09005 * 109.47124 * 175.00316 * 14 10 9 39 39 H 0.96999 * 119.99984 * 359.97438 * 15 14 10 40 40 H 1.09005 * 109.47403 * 300.00056 * 18 16 15 41 41 H 1.09002 * 109.47422 * 60.00295 * 18 16 15 42 42 H 0.97005 * 120.00072 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 -0.0006 5 1 4.3788 1.2209 -0.0011 6 6 3.5464 -0.7003 -0.0015 7 6 4.7174 -1.5958 -0.0018 8 8 5.8402 -1.1286 -0.0017 9 7 4.5437 -2.9323 -0.0023 10 6 5.7074 -3.8222 -0.0032 11 1 6.5071 -3.3740 -0.5928 12 6 6.1895 -4.0327 1.4336 13 8 5.1844 -4.7253 2.1766 14 6 5.3181 -5.1702 -0.6132 15 7 4.7452 -4.9566 -1.9444 16 6 4.3275 -6.0093 -2.6752 17 8 4.4306 -7.1337 -2.2327 18 6 3.7376 -5.7894 -4.0444 19 16 3.2758 -7.3841 -4.7655 20 6 2.6331 -6.8447 -6.3149 21 1 2.6187 -5.7921 -6.5565 22 6 2.1454 -7.7724 -7.2248 23 7 2.1635 -9.0552 -6.9304 24 14 1.4647 -7.2006 -8.8676 25 1 1.5572 -5.7209 -8.9538 26 1 2.2515 -7.8112 -9.9691 27 1 0.0436 -7.6149 -8.9858 28 7 2.2861 -1.0792 -0.0072 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9711 2.1277 0.0011 33 1 3.6482 -3.3049 -0.0027 34 1 7.1067 -4.6216 1.4265 35 1 6.3824 -3.0654 1.8975 36 1 5.4229 -4.8938 3.0985 37 1 4.5819 -5.6588 0.0251 38 1 6.2033 -5.8009 -0.6955 39 1 4.6657 -4.0575 -2.2997 40 1 2.8526 -5.1585 -3.9617 41 1 4.4736 -5.3010 -4.6830 42 1 1.8230 -9.7037 -7.5665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738866490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:03 Heat of formation + Delta-G solvation = -68.077455 kcal Electronic energy + Delta-G solvation = -26658.719926 eV Core-core repulsion = 22573.040468 eV Total energy + Delta-G solvation = -4085.679459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.65180 -40.18712 -38.99688 -37.51771 -35.54617 -33.87786 -33.45902 -32.39986 -31.87559 -30.51082 -29.03208 -27.39624 -25.71885 -25.26596 -24.22714 -21.58701 -20.86975 -20.57545 -20.32083 -19.15429 -17.87608 -17.83424 -16.89788 -16.74556 -16.32261 -16.08175 -15.53236 -15.15168 -14.99282 -14.77907 -14.58527 -14.49302 -14.13446 -13.93465 -13.71072 -13.40909 -13.15966 -13.09231 -12.87664 -12.56459 -12.55347 -12.32350 -11.81126 -11.54536 -11.04700 -10.98821 -10.78133 -10.73259 -10.62472 -10.50515 -10.33401 -9.78151 -9.59279 -9.36902 -9.05054 -8.88461 -8.81594 -8.19691 -6.46315 -6.18920 -3.88899 0.94996 2.13573 2.15133 2.98896 3.02434 3.10569 3.14572 3.23787 3.30351 3.35219 3.71839 3.84778 3.90012 4.23167 4.38345 4.51010 4.67405 4.71892 4.82132 4.98620 5.10293 5.14975 5.16360 5.26484 5.37109 5.42003 5.48384 5.54393 5.65665 5.67199 5.90024 5.93353 6.01535 6.18651 6.21712 6.58747 6.70751 7.00175 7.28800 7.44326 7.62905 7.69800 7.72350 8.38531 8.63295 9.26629 10.88588 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.002640 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.844565 B =10604.654711 C =12654.841680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.002 3.998 3 C -0.023 4.023 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.144 3.856 7 C 0.611 3.389 8 O -0.546 6.546 9 N -0.691 5.691 10 C 0.139 3.861 11 H 0.110 0.890 12 C 0.067 3.933 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.740 5.740 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.434 5.434 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.187 0.813 33 H 0.420 0.580 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.381 0.619 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 22.258 19.322 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C -0.162 4.162 4 N -0.126 5.126 5 H 0.269 0.731 6 C -0.117 4.117 7 C 0.395 3.605 8 O -0.423 6.423 9 N -0.343 5.343 10 C 0.034 3.966 11 H 0.128 0.872 12 C -0.012 4.012 13 O -0.370 6.370 14 C -0.008 4.008 15 N -0.396 5.396 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 N -0.157 5.157 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.204 0.796 33 H 0.257 0.743 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.228 0.772 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.538 19.657 19.425 28.006 hybrid contribution -0.019 3.186 -1.194 3.403 sum 4.520 22.844 18.232 29.575 Atomic orbital electron populations 1.20097 0.86835 1.03073 1.02832 1.20959 0.97169 0.87825 1.07230 1.22769 0.82927 1.01138 1.09347 1.42869 1.09204 1.07478 1.53047 0.73075 1.22518 0.93756 0.82320 1.13140 1.16461 0.85550 0.82050 0.76463 1.90845 1.23696 1.76156 1.51557 1.45653 1.11409 1.04319 1.72935 1.21480 0.89181 0.90204 0.95735 0.87171 1.22509 0.90862 0.96408 0.91464 1.86512 1.44069 1.79236 1.27210 1.21494 1.00611 0.94663 0.84028 1.45991 1.65844 1.10022 1.17715 1.20282 0.77044 0.84302 0.86396 1.90707 1.53702 1.22886 1.71593 1.23533 1.03278 1.08126 0.95483 1.85381 1.79651 1.00995 1.17243 1.22914 1.47242 0.95822 1.02270 0.90906 1.24988 0.95355 0.94527 0.98743 1.70029 1.43839 1.00602 1.35837 0.86118 0.78604 0.78785 0.81992 1.19637 1.20596 1.20562 1.70143 0.99070 1.31039 1.15480 0.90890 0.90695 0.91085 0.79599 0.74264 0.91922 0.92640 0.77169 0.89468 0.89880 0.76850 0.89175 0.89286 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.00 0.38 -0.10 16 2 C 0.00 0.02 7.07 -83.00 -0.59 -0.56 16 3 C -0.02 -0.15 11.91 -16.93 -0.20 -0.35 16 4 N -0.52 -4.03 6.14 -10.78 -0.07 -4.10 16 5 H 0.43 2.33 8.96 -40.82 -0.37 1.96 16 6 C 0.14 1.52 7.95 -154.52 -1.23 0.29 16 7 C 0.61 6.71 7.78 -12.52 -0.10 6.61 16 8 O -0.55 -6.80 16.76 5.27 0.09 -6.71 16 9 N -0.69 -6.95 4.46 -54.89 -0.24 -7.20 16 10 C 0.14 1.30 2.53 -67.93 -0.17 1.13 16 11 H 0.11 1.01 7.58 -51.93 -0.39 0.62 16 12 C 0.07 0.52 6.85 37.16 0.25 0.78 16 13 O -0.56 -4.74 12.64 -35.23 -0.45 -5.18 16 14 C 0.12 1.36 5.12 -4.05 -0.02 1.34 16 15 N -0.74 -10.14 5.39 -60.30 -0.32 -10.46 16 16 C 0.53 10.12 7.85 -10.98 -0.09 10.04 16 17 O -0.51 -11.78 15.86 5.56 0.09 -11.69 16 18 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.42 9.50 30.94 0.29 -15.12 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 24 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 N -0.43 -4.96 10.89 -7.50 -0.08 -5.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.19 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.42 4.52 8.28 -40.82 -0.34 4.18 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 1.60 9.12 45.56 0.42 2.02 16 37 H 0.09 1.16 7.39 -51.93 -0.38 0.78 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.40 4.68 8.14 -40.82 -0.33 4.35 16 40 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -38.57 384.22 -7.79 -46.36 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.75 Total: 8.02 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.34 Total: 3.10 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.02 Total: -52.46 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.27 Total: -23.58 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.57 -7.79 -46.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738866490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.718 kcal (2) G-P(sol) polarization free energy of solvation -38.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds