Wall clock time and date at job start Wed Apr 1 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35565 * 125.82721 * 2 1 4 4 N 1.35402 * 107.15899 * 179.73773 * 3 2 1 5 5 H 0.97004 * 126.43424 * 180.02562 * 4 3 2 6 6 C 1.36662 * 107.12101 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.85940 * 179.97438 * 6 4 3 8 8 O 1.21606 * 119.99972 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99966 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99869 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46550 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47113 * 294.99405 * 11 10 9 13 13 C 1.53004 * 109.46774 * 175.00367 * 11 10 9 14 14 O 1.42900 * 109.46710 * 304.99828 * 13 11 10 15 15 N 1.46491 * 109.47383 * 55.00366 * 11 10 9 16 16 C 1.34774 * 119.99859 * 204.99990 * 15 11 10 17 17 O 1.21275 * 120.00357 * 359.97438 * 16 15 11 18 18 C 1.50708 * 119.99991 * 179.97438 * 16 15 11 19 19 S 1.80999 * 109.47115 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99872 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99873 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00091 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99870 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00331 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46998 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47653 * 119.99797 * 24 22 20 27 27 H 1.48505 * 109.47269 * 240.00015 * 24 22 20 28 28 N 1.31607 * 108.27744 * 0.02562 * 6 4 3 29 29 H 1.08996 * 109.47165 * 89.99826 * 1 2 3 30 30 H 1.08996 * 109.47622 * 210.00574 * 1 2 3 31 31 H 1.09002 * 109.47052 * 330.00592 * 1 2 3 32 32 H 1.08001 * 126.41501 * 359.71413 * 3 2 1 33 33 H 0.97000 * 119.99471 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.46927 * 299.99852 * 10 9 7 35 35 H 1.09002 * 109.46992 * 60.00292 * 10 9 7 36 36 H 1.08997 * 109.47403 * 64.99907 * 13 11 10 37 37 H 1.09001 * 109.46838 * 184.99890 * 13 11 10 38 38 H 0.96702 * 113.99473 * 180.02562 * 14 13 11 39 39 H 0.96996 * 120.00200 * 24.99575 * 15 11 10 40 40 H 1.08999 * 109.47054 * 300.00121 * 18 16 15 41 41 H 1.09002 * 109.46664 * 59.99668 * 18 16 15 42 42 H 0.97005 * 119.99789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0059 5 1 4.3789 1.2207 0.0077 6 6 3.5464 -0.7004 0.0100 7 6 4.7173 -1.5958 0.0165 8 8 5.8401 -1.1286 0.0180 9 7 4.5436 -2.9324 0.0195 10 6 5.7073 -3.8223 0.0253 11 6 5.2360 -5.2779 0.0285 12 1 4.7085 -5.4870 0.9592 13 6 6.4465 -6.2061 -0.0911 14 8 7.2033 -5.8547 -1.2512 15 7 4.3350 -5.5020 -1.1046 16 6 3.4198 -6.4900 -1.0527 17 8 3.3425 -7.1939 -0.0682 18 6 2.4925 -6.7202 -2.2182 19 16 1.3899 -8.1068 -1.8473 20 6 0.4453 -8.1528 -3.3340 21 1 0.6462 -7.4438 -4.1236 22 6 -0.5570 -9.1001 -3.4904 23 7 -0.8015 -9.9645 -2.5282 24 14 -1.5579 -9.1493 -5.0668 25 1 -1.0893 -8.0798 -5.9843 26 1 -1.3881 -10.4721 -5.7200 27 1 -2.9926 -8.9347 -4.7491 28 7 2.2860 -1.0792 0.0061 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.9711 2.1277 -0.0043 33 1 3.6480 -3.3050 0.0179 34 1 6.3106 -3.6373 -0.8634 35 1 6.3054 -3.6325 0.9166 36 1 7.0720 -6.1036 0.7956 37 1 6.1059 -7.2379 -0.1782 38 1 7.9873 -6.4034 -1.3903 39 1 4.3970 -4.9393 -1.8923 40 1 1.9007 -5.8220 -2.3945 41 1 3.0780 -6.9500 -3.1084 42 1 -1.5023 -10.6263 -2.6374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738887935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:36 Heat of formation + Delta-G solvation = -68.833189 kcal Electronic energy + Delta-G solvation = -26721.919785 eV Core-core repulsion = 22636.207555 eV Total energy + Delta-G solvation = -4085.712230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58307 -40.03538 -39.16786 -37.27414 -35.57881 -33.85292 -33.40878 -32.40919 -31.71549 -30.70140 -28.45885 -27.56928 -26.05495 -25.46080 -23.49116 -21.72824 -20.80695 -20.58642 -20.32329 -19.01132 -17.92583 -17.62040 -16.88204 -16.66885 -16.31516 -16.07368 -15.57504 -15.11643 -14.91037 -14.78560 -14.43839 -14.41738 -14.02574 -13.95137 -13.72871 -13.33277 -13.18249 -13.04416 -12.89012 -12.47889 -12.46029 -12.33732 -11.75424 -11.52490 -11.05459 -10.99908 -10.74134 -10.66810 -10.54309 -10.44102 -10.22584 -9.78847 -9.50502 -9.37418 -9.06585 -8.97743 -8.74477 -8.21701 -6.47683 -6.20171 -3.90120 1.02499 2.22002 2.22865 2.97965 3.03690 3.10816 3.18778 3.23141 3.29650 3.34340 3.69428 3.92666 4.09043 4.22197 4.40418 4.56192 4.74322 4.88407 4.91519 5.08809 5.13080 5.15354 5.20908 5.41041 5.44784 5.49697 5.53940 5.60345 5.64057 5.75102 5.85214 5.92262 6.02940 6.18353 6.28969 6.55029 6.77159 7.06221 7.42780 7.51328 7.62100 7.67447 7.80726 8.37593 8.56821 9.25674 10.87306 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008704 B = 0.002951 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.114178 B = 9485.937768 C =12090.154200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.004 3.996 3 C -0.024 4.024 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.144 3.856 7 C 0.609 3.391 8 O -0.544 6.544 9 N -0.702 5.702 10 C 0.117 3.883 11 C 0.139 3.861 12 H 0.109 0.891 13 C 0.066 3.934 14 O -0.569 6.569 15 N -0.729 5.729 16 C 0.536 3.464 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.435 5.435 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.187 0.813 33 H 0.417 0.583 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.380 0.620 39 H 0.402 0.598 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.049 21.380 5.571 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C -0.163 4.163 4 N -0.126 5.126 5 H 0.269 0.731 6 C -0.117 4.117 7 C 0.393 3.607 8 O -0.421 6.421 9 N -0.354 5.354 10 C -0.007 4.007 11 C 0.033 3.967 12 H 0.126 0.874 13 C -0.014 4.014 14 O -0.375 6.375 15 N -0.384 5.384 16 C 0.322 3.678 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 N -0.158 5.158 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.204 0.796 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.237 0.763 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.919 19.946 7.236 24.336 hybrid contribution 0.128 1.580 -2.452 2.920 sum 12.047 21.525 4.784 25.127 Atomic orbital electron populations 1.20106 0.86795 1.03183 1.02825 1.20972 0.97191 0.87796 1.07109 1.22759 0.82928 1.01108 1.09539 1.42865 1.09181 1.07474 1.53116 0.73106 1.22559 0.93782 0.82347 1.13044 1.16405 0.85495 0.81975 0.76810 1.90845 1.23745 1.76142 1.51373 1.45649 1.11639 1.04707 1.73410 1.21690 0.87679 0.86997 1.04318 1.21238 0.90214 0.92858 0.92357 0.87356 1.22559 0.92108 0.98741 0.87950 1.86442 1.42728 1.61724 1.46592 1.46012 1.36245 1.36347 1.19793 1.20350 0.79737 0.79059 0.88644 1.90699 1.69858 1.45481 1.33202 1.23533 1.01261 1.06827 0.98795 1.85349 1.37883 1.34818 1.25236 1.22912 1.21526 1.20793 1.02967 0.90879 1.24985 0.96485 0.94628 0.97490 1.70031 1.30875 1.17429 1.32010 0.86123 0.79494 0.78104 0.81814 1.19608 1.20611 1.20563 1.70160 0.99065 1.31064 1.15521 0.90920 0.90542 0.91095 0.79613 0.74528 0.89142 0.89773 0.92596 0.91866 0.77272 0.76314 0.89065 0.89200 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 36.01 0.38 -0.18 16 2 C 0.00 0.04 7.07 -83.00 -0.59 -0.55 16 3 C -0.02 -0.18 11.91 -16.93 -0.20 -0.38 16 4 N -0.52 -4.42 6.14 -10.78 -0.07 -4.49 16 5 H 0.43 2.60 8.96 -40.82 -0.37 2.24 16 6 C 0.14 1.66 7.95 -154.53 -1.23 0.43 16 7 C 0.61 7.40 7.81 -12.52 -0.10 7.30 16 8 O -0.54 -7.55 17.09 5.27 0.09 -7.46 16 9 N -0.70 -7.70 5.38 -61.39 -0.33 -8.03 16 10 C 0.12 1.17 5.12 -4.04 -0.02 1.15 16 11 C 0.14 1.54 2.53 -67.93 -0.17 1.36 16 12 H 0.11 1.29 7.58 -51.93 -0.39 0.89 16 13 C 0.07 0.66 6.85 37.16 0.25 0.91 16 14 O -0.57 -5.40 12.64 -35.23 -0.45 -5.85 16 15 N -0.73 -9.48 4.46 -53.81 -0.24 -9.72 16 16 C 0.54 9.58 7.81 -10.98 -0.09 9.49 16 17 O -0.52 -11.05 15.52 5.56 0.09 -10.97 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 N -0.43 -5.42 10.89 -7.50 -0.08 -5.50 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.42 4.81 7.82 -40.82 -0.32 4.49 16 34 H 0.09 0.98 7.39 -51.93 -0.38 0.59 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.38 2.12 9.12 45.56 0.42 2.53 16 39 H 0.40 4.68 8.60 -40.82 -0.35 4.33 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -37.74 384.22 -7.79 -45.53 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.75 Total: 9.69 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.34 Total: 3.76 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.02 Total: -53.12 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.27 Total: -24.27 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.74 -7.79 -45.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738887935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.307 kcal (2) G-P(sol) polarization free energy of solvation -37.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds