Wall clock time and date at job start Wed Apr 1 2020 01:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29515 * 121.53385 * 2 1 4 4 S 1.69491 * 107.84321 * 180.02562 * 3 2 1 5 5 C 1.72019 * 96.02501 * 359.97438 * 4 3 2 6 6 C 1.37891 * 105.36630 * 0.02562 * 5 4 3 7 7 C 1.47348 * 123.08574 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99882 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00010 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00469 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47316 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47343 * 60.00376 * 11 10 9 13 13 O 1.42893 * 109.47130 * 299.99574 * 11 10 9 14 14 C 1.53002 * 109.46621 * 179.97438 * 11 10 9 15 15 N 1.46906 * 109.46752 * 184.99950 * 14 11 10 16 16 C 1.46895 * 111.00060 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47557 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99828 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00627 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00134 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00310 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99758 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99880 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47360 * 89.99692 * 24 22 20 26 26 H 1.48499 * 109.46956 * 210.00025 * 24 22 20 27 27 H 1.48504 * 109.46977 * 329.99988 * 24 22 20 28 28 H 1.08994 * 109.47364 * 269.98075 * 1 2 3 29 29 H 1.09005 * 109.47231 * 29.97681 * 1 2 3 30 30 H 1.08998 * 109.47337 * 149.97495 * 1 2 3 31 31 H 1.07996 * 127.31318 * 179.97438 * 5 4 3 32 32 H 0.97003 * 119.99749 * 0.02562 * 9 7 6 33 33 H 1.09008 * 109.46537 * 300.00286 * 10 9 7 34 34 H 1.09001 * 109.46835 * 59.99382 * 10 9 7 35 35 H 0.96697 * 114.00228 * 300.00329 * 13 11 10 36 36 H 1.08999 * 109.47300 * 304.99809 * 14 11 10 37 37 H 1.08995 * 109.47277 * 65.00415 * 14 11 10 38 38 H 1.00896 * 110.99986 * 303.95451 * 15 14 11 39 39 H 1.09002 * 109.47205 * 300.00149 * 16 15 14 40 40 H 1.09001 * 109.47116 * 59.99758 * 16 15 14 41 41 H 0.96999 * 119.99493 * 359.97438 * 19 17 16 42 42 H 0.97007 * 119.99780 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8311 0.7027 -0.0007 5 6 3.6016 -1.0021 -0.0003 6 6 2.2351 -1.1868 -0.0002 7 6 1.6034 -2.5180 -0.0003 8 8 0.3912 -2.6159 -0.0007 9 7 2.3690 -3.6272 -0.0001 10 6 1.7411 -4.9508 -0.0008 11 6 2.8257 -6.0299 0.0003 12 1 3.4447 -5.9220 0.8910 13 8 3.6396 -5.8883 -1.1656 14 6 2.1697 -7.4121 0.0001 15 7 3.2063 -8.4460 0.1219 16 6 2.6120 -9.7894 0.1258 17 6 3.7031 -10.8211 0.2525 18 8 4.8619 -10.4716 0.3322 19 7 3.3916 -12.1321 0.2772 20 6 4.3842 -13.0706 0.3930 21 1 5.4160 -12.7594 0.4639 22 6 4.0629 -14.4222 0.4180 23 7 2.8076 -14.8008 0.3312 24 14 5.4155 -15.7010 0.5750 25 1 5.6618 -15.9874 2.0111 26 1 4.9994 -16.9487 -0.1144 27 1 6.6607 -15.1833 -0.0471 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 4.3655 -1.7654 -0.0009 32 1 3.3359 -3.5491 0.0006 33 1 1.1205 -5.0589 0.8888 34 1 1.1216 -5.0585 -0.8912 35 1 3.1536 -5.9731 -1.9973 36 1 1.4808 -7.4875 0.8414 37 1 1.6224 -7.5545 -0.9316 38 1 3.8940 -8.3566 -0.6110 39 1 1.9264 -9.8809 0.9683 40 1 2.0673 -9.9485 -0.8048 41 1 2.4649 -12.4116 0.2139 42 1 2.5832 -15.7445 0.3490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753909699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:38 Heat of formation + Delta-G solvation = -112.020132 kcal Electronic energy + Delta-G solvation = -25835.701017 eV Core-core repulsion = 21748.116061 eV Total energy + Delta-G solvation = -4087.584956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44494 -40.20039 -39.52649 -38.67653 -36.31382 -35.70109 -35.37243 -33.26332 -32.94741 -31.11041 -30.55917 -28.59874 -26.69314 -25.50681 -24.39329 -22.74820 -22.16392 -21.09753 -20.53326 -19.90885 -19.53216 -18.17869 -18.08196 -17.42462 -17.23440 -16.74124 -16.47716 -16.30813 -16.15853 -15.96249 -15.56577 -15.29370 -15.14958 -14.97097 -14.65240 -14.38778 -14.33133 -13.99136 -13.52644 -13.41988 -13.36526 -13.29453 -13.14565 -12.92321 -12.67568 -12.41296 -12.36367 -12.11669 -11.93724 -11.78634 -11.50231 -11.19869 -10.88986 -10.81253 -10.32447 -10.20950 -10.01020 -9.70545 -9.31477 -8.46342 -5.95036 -0.62669 0.32981 0.67866 0.72469 1.38760 1.42735 1.55269 2.00883 2.06147 2.15649 2.30200 2.91834 3.21163 3.44785 3.46380 3.51578 3.79305 3.87649 3.91611 4.03728 4.17909 4.29579 4.33432 4.40694 4.46783 4.53883 4.58473 4.64701 4.70924 4.73772 4.79543 5.11091 5.15317 5.37292 5.41478 5.58947 5.87986 6.09963 6.41516 6.44441 6.60725 6.79976 7.12143 7.13243 7.56997 8.12462 8.70909 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.034656 B = 0.001476 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.751956 B =18965.321037 C =19630.972048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.155 3.845 3 N -0.507 5.507 4 S 0.325 5.675 5 C -0.150 4.150 6 C -0.235 4.235 7 C 0.585 3.415 8 O -0.561 6.561 9 N -0.704 5.704 10 C 0.097 3.903 11 C 0.112 3.888 12 H 0.108 0.892 13 O -0.566 6.566 14 C 0.031 3.969 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.226 0.774 32 H 0.414 0.586 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.387 0.613 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.348 0.652 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 28.145 -2.678 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.022 4.022 3 N -0.328 5.328 4 S 0.480 5.520 5 C -0.300 4.300 6 C -0.256 4.256 7 C 0.371 3.629 8 O -0.442 6.442 9 N -0.356 5.356 10 C -0.027 4.027 11 C 0.052 3.948 12 H 0.126 0.874 13 O -0.373 6.373 14 C -0.099 4.099 15 N -0.314 5.314 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.243 0.757 32 H 0.251 0.749 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.237 0.763 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.167 0.833 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.947 30.295 -1.509 30.475 hybrid contribution -0.971 -2.758 -1.138 3.138 sum -3.918 27.536 -2.647 27.939 Atomic orbital electron populations 1.20879 0.85345 1.04870 1.04372 1.21634 1.00055 0.87022 0.93490 1.76386 1.02169 1.26965 1.27301 1.84069 1.08660 0.95505 1.63721 1.27907 0.99068 1.05581 0.97417 1.20311 0.93029 0.95312 1.16972 1.17409 0.86120 0.83523 0.75893 1.90729 1.14627 1.87036 1.51816 1.45579 1.10917 1.04828 1.74257 1.21996 0.95718 0.81127 1.03871 1.22012 0.91724 0.91107 0.89921 0.87432 1.86618 1.39274 1.94889 1.16548 1.22650 0.93781 0.90929 1.02537 1.59970 1.15439 1.00902 1.55063 1.21541 0.94316 0.87963 1.02923 1.20944 0.90707 0.83733 0.82286 1.90498 1.22874 1.81099 1.56577 1.41934 1.09772 1.04730 1.64611 1.19676 0.90203 0.87134 1.49498 0.90343 1.26030 0.99536 0.99336 0.96307 1.69670 1.17997 1.18237 1.50146 0.84928 0.77664 0.77131 0.78614 1.19701 1.19543 1.19783 0.89571 0.90211 0.88138 0.75750 0.74891 0.90032 0.90297 0.76328 0.88885 0.92976 0.83261 0.87691 0.91451 0.76944 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.51 71.23 0.68 -0.87 16 2 C 0.15 2.77 6.75 43.14 0.29 3.07 16 3 N -0.51 -9.34 11.97 -51.08 -0.61 -9.95 16 4 S 0.32 3.72 23.69 -56.49 -1.34 2.38 16 5 C -0.15 -1.38 10.79 67.74 0.73 -0.65 16 6 C -0.23 -3.56 5.86 -20.72 -0.12 -3.68 16 7 C 0.59 10.02 7.78 86.64 0.67 10.70 16 8 O -0.56 -12.94 13.75 -4.08 -0.06 -12.99 16 9 N -0.70 -8.65 5.42 -466.45 -2.53 -11.17 16 10 C 0.10 1.21 5.34 86.38 0.46 1.67 16 11 C 0.11 1.60 3.29 30.59 0.10 1.70 16 12 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 13 O -0.57 -8.44 12.60 -148.98 -1.88 -10.32 16 14 C 0.03 0.54 5.36 86.30 0.46 1.00 16 15 N -0.68 -19.31 6.12 -517.93 -3.17 -22.49 16 16 C 0.06 2.08 6.17 85.56 0.53 2.60 16 17 C 0.44 20.29 7.82 87.66 0.69 20.97 16 18 O -0.62 -34.23 15.78 -3.08 -0.05 -34.28 16 19 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 20 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 24 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.10 1.88 5.63 -2.39 -0.01 1.87 16 31 H 0.23 0.38 7.20 -2.91 -0.02 0.36 16 32 H 0.41 3.51 6.92 -92.71 -0.64 2.86 16 33 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.39 3.50 9.05 -74.06 -0.67 2.83 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.35 10.82 7.99 -89.70 -0.72 10.11 16 39 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 42 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -75.21 375.82 -4.82 -80.03 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -1.64 Total: 35.40 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 5.77 Total: 18.22 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -7.65 Total: -122.99 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -1.98 Total: -57.59 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.34 Total: 2.38 kcal Total: -75.21 -4.82 -80.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.994 kcal (2) G-P(sol) polarization free energy of solvation -75.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds