Wall clock time and date at job start Wed Apr 1 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.42906 * 110.62965 * 300.70207 * 15 14 13 17 17 C 1.55140 * 110.70549 * 63.80664 * 15 14 13 18 18 C 1.55121 * 101.55922 * 153.90944 * 17 15 14 19 19 N 1.47840 * 104.90283 * 323.15636 * 18 17 15 20 20 C 1.46899 * 111.00133 * 146.24292 * 19 18 17 21 21 C 1.50702 * 109.47060 * 69.15524 * 20 19 18 22 22 C 1.40892 * 125.30363 * 94.72434 * 21 20 19 23 23 N 1.29957 * 109.39538 * 179.80328 * 22 21 20 24 24 O 1.41883 * 107.40522 * 0.44146 * 23 22 21 25 25 N 1.29949 * 125.30495 * 275.02537 * 21 20 19 26 26 C 1.47442 * 108.57148 * 23.97490 * 19 18 17 27 27 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 29 29 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 32 32 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 33 33 H 0.96698 * 114.00083 * 59.29316 * 16 15 14 34 34 H 1.09003 * 110.98839 * 272.12444 * 17 15 14 35 35 H 1.08991 * 110.99230 * 35.94150 * 17 15 14 36 36 H 1.08999 * 110.41981 * 204.24242 * 18 17 15 37 37 H 1.08997 * 110.30839 * 82.01389 * 18 17 15 38 38 H 1.08997 * 109.47542 * 189.16032 * 20 19 18 39 39 H 1.09007 * 109.47188 * 309.15698 * 20 19 18 40 40 H 1.07997 * 125.30433 * 359.97438 * 22 21 20 41 41 H 1.08996 * 109.89316 * 239.60643 * 26 19 18 42 42 H 1.08996 * 109.89082 * 118.41492 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 6 3.5025 -8.6985 0.0131 16 8 4.3264 -8.5042 -1.1383 17 6 4.3353 -8.5545 1.3141 18 6 4.9576 -9.9696 1.4429 19 7 3.9019 -10.8932 0.9760 20 6 4.4841 -12.0557 0.2922 21 6 5.2050 -12.9193 1.2950 22 6 4.6541 -14.0374 1.9519 23 7 5.5446 -14.5542 2.7448 24 8 6.7200 -13.7674 2.6332 25 7 6.4299 -12.7455 1.6928 26 6 2.9935 -10.1538 0.0804 27 1 -0.4851 0.8400 0.0004 28 1 3.1252 -3.7317 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8010 -6.1834 0.0019 31 1 1.7221 -7.8710 0.9002 32 1 1.7216 -7.8793 -0.8797 33 1 4.7019 -7.6158 -1.2079 34 1 5.1079 -7.7940 1.2009 35 1 3.6930 -8.3327 2.1662 36 1 5.2133 -10.1794 2.4815 37 1 5.8416 -10.0530 0.8108 38 1 3.6907 -12.6338 -0.1813 39 1 5.1884 -11.7155 -0.4671 40 1 3.6492 -14.4088 1.8154 41 1 1.9801 -10.1739 0.4812 42 1 3.0101 -10.5989 -0.9144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754747510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:22 Heat of formation + Delta-G solvation = -10.864951 kcal Electronic energy + Delta-G solvation = -26418.366082 eV Core-core repulsion = 22335.167544 eV Total energy + Delta-G solvation = -4083.198538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44558 -41.23667 -40.14273 -37.48283 -35.29795 -34.79993 -34.57468 -33.75086 -32.24283 -31.23834 -30.06146 -27.98881 -27.60447 -25.72221 -24.31490 -22.95860 -21.89288 -21.60192 -21.42246 -19.91009 -18.54877 -18.12875 -17.72592 -17.47004 -16.88411 -16.86215 -16.69161 -16.58073 -16.21359 -15.86674 -15.75205 -15.37287 -15.19647 -14.80456 -14.63283 -14.43191 -14.15474 -13.78788 -13.70789 -13.36875 -13.16374 -12.99601 -12.86960 -12.78968 -12.78141 -12.64075 -12.59183 -12.29409 -12.18921 -11.98383 -11.90551 -11.72000 -11.12349 -11.05344 -10.95887 -10.26992 -10.18659 -9.56209 -8.65646 -8.34006 -6.11820 -0.50347 1.02283 1.27151 1.44160 1.47237 1.55606 1.56957 1.60395 2.15364 2.21405 2.28657 2.78923 2.99237 3.00255 3.06458 3.31213 3.40914 3.51871 3.73933 3.85425 3.98234 4.04026 4.21824 4.25647 4.32005 4.41043 4.48778 4.52107 4.55254 4.64588 4.66091 4.72463 4.82979 4.89940 4.99053 5.06513 5.34114 5.42410 5.67006 5.78512 5.87861 6.20098 6.40821 6.62660 7.07514 7.20981 8.74760 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.001684 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.800993 B =16627.198924 C =16987.387153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.711 5.711 14 C 0.106 3.894 15 C 0.112 3.888 16 O -0.557 6.557 17 C -0.152 4.152 18 C 0.047 3.953 19 N -0.522 5.522 20 C 0.111 3.889 21 C 0.095 3.905 22 C 0.088 3.912 23 N -0.305 5.305 24 O -0.024 6.024 25 N -0.297 5.297 26 C 0.061 3.939 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.413 0.587 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.389 0.611 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.151 0.849 39 H 0.070 0.930 40 H 0.263 0.737 41 H 0.113 0.887 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.357 -27.216 -0.524 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.366 5.366 14 C -0.018 4.018 15 C 0.070 3.930 16 O -0.365 6.365 17 C -0.190 4.190 18 C -0.080 4.080 19 N -0.247 5.247 20 C -0.018 4.018 21 C -0.089 4.089 22 C -0.115 4.115 23 N -0.052 5.052 24 O -0.157 6.157 25 N -0.044 5.044 26 C -0.067 4.067 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.239 0.761 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.278 0.722 41 H 0.131 0.869 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.108 -28.519 0.522 30.262 hybrid contribution 2.004 2.390 -0.715 3.200 sum 12.112 -26.129 -0.193 28.801 Atomic orbital electron populations 1.70173 1.07938 1.28648 1.47944 1.26104 0.95941 1.03268 0.93776 0.85028 0.77821 0.75842 0.79468 1.18666 1.20507 1.18725 1.23178 0.95369 0.92057 1.58915 0.89851 1.85583 1.10547 0.99210 1.97060 1.23383 1.03591 0.94356 1.06905 1.20005 0.86175 0.86561 0.74967 1.90709 1.17418 1.86036 1.49855 1.45586 1.10082 1.04959 1.76015 1.21957 0.96766 0.80016 1.03090 1.22565 0.88996 0.95632 0.85812 1.86551 1.67275 1.38066 1.44598 1.23440 1.00284 0.97399 0.97903 1.23018 0.93333 0.91163 1.00513 1.63680 1.17126 1.07445 1.36402 1.21210 0.99063 0.91248 0.90303 1.25002 0.90616 0.95913 0.97359 1.26834 1.03050 0.91546 0.90107 1.79934 0.93819 1.13745 1.17705 1.93403 1.32085 1.35037 1.55208 1.79928 1.15898 1.05993 1.02561 1.22843 0.97579 0.88768 0.97474 0.92018 0.87147 0.87042 0.75018 0.90563 0.91340 0.76098 0.88847 0.89530 0.91343 0.93014 0.83138 0.91203 0.72179 0.86870 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 42.70 29.55 68.60 2.03 44.73 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.55 -30.44 9.50 67.95 0.65 -29.80 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 11 C 0.54 17.77 7.85 87.66 0.69 18.46 16 12 O -0.56 -24.27 15.86 -3.04 -0.05 -24.31 16 13 N -0.71 -14.28 5.17 -463.07 -2.39 -16.67 16 14 C 0.11 1.82 4.72 86.38 0.41 2.23 16 15 C 0.11 1.26 0.92 -9.61 -0.01 1.26 16 16 O -0.56 -6.65 13.09 -148.98 -1.95 -8.60 16 17 C -0.15 -1.67 5.83 32.05 0.19 -1.48 16 18 C 0.05 0.58 6.02 86.85 0.52 1.10 16 19 N -0.52 -4.76 5.15 -889.66 -4.58 -9.34 16 20 C 0.11 0.65 5.12 85.56 0.44 1.09 16 21 C 0.10 1.01 6.23 43.49 0.27 1.28 16 22 C 0.09 0.69 11.90 85.62 1.02 1.71 16 23 N -0.31 -5.10 12.98 -56.80 -0.74 -5.84 16 24 O -0.02 -0.54 13.71 70.17 0.96 0.43 16 25 N -0.30 -5.42 12.79 -47.16 -0.60 -6.02 16 26 C 0.06 0.52 6.23 86.65 0.54 1.06 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 30 H 0.41 5.28 7.31 -92.71 -0.68 4.60 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.39 2.89 7.93 -74.06 -0.59 2.30 16 34 H 0.09 0.83 8.13 -2.39 -0.02 0.81 16 35 H 0.09 1.09 8.05 -2.39 -0.02 1.07 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.05 0.71 7.62 -2.39 -0.02 0.69 16 38 H 0.15 -0.24 8.03 -2.39 -0.02 -0.26 16 39 H 0.07 0.53 7.85 -2.38 -0.02 0.51 16 40 H 0.26 -0.86 8.06 -2.91 -0.02 -0.89 16 41 H 0.11 0.83 7.82 -2.39 -0.02 0.82 16 42 H 0.09 0.61 7.47 -2.39 -0.02 0.59 16 Total: -1.00 -84.14 374.46 -2.78 -86.92 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -0.19 Total: 8.98 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.61 Total: -6.19 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -8.03 Total: -92.67 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.04 Total: -32.48 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -84.14 -2.78 -86.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754747510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.055 kcal (2) G-P(sol) polarization free energy of solvation -84.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds