Wall clock time and date at job start Wed Apr 1 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29414 * 125.70440 * 2 1 4 4 N 1.26391 * 116.47968 * 179.74640 * 3 2 1 5 5 C 1.29414 * 116.47652 * 0.53665 * 4 3 2 6 6 C 1.50702 * 125.69819 * 179.76775 * 5 4 3 7 7 O 1.42900 * 109.47125 * 89.69102 * 6 5 4 8 8 C 1.42899 * 113.99773 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46904 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00210 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99862 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46928 * 179.97438 * 12 11 9 14 14 O 1.42899 * 113.41348 * 313.20372 * 13 12 11 15 15 C 1.53496 * 114.20479 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98324 * 220.34620 * 15 13 12 17 17 C 1.36944 * 136.05683 * 207.08528 * 16 15 13 18 18 H 1.08004 * 119.99874 * 6.90177 * 17 16 15 19 19 C 1.38808 * 119.99887 * 186.89762 * 17 16 15 20 20 N 1.31620 * 119.99758 * 172.36849 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 352.64805 * 19 17 16 22 22 H 1.48502 * 109.46980 * 175.03997 * 21 19 17 23 23 H 1.48501 * 109.46832 * 295.03703 * 21 19 17 24 24 H 1.48495 * 109.47214 * 55.03946 * 21 19 17 25 25 C 1.47058 * 87.88471 * 27.34220 * 16 15 13 26 26 S 1.71219 * 108.60575 * 359.50510 * 5 4 3 27 27 H 1.08995 * 109.47047 * 269.96037 * 1 2 3 28 28 H 1.09004 * 109.46615 * 29.95965 * 1 2 3 29 29 H 1.08993 * 109.46951 * 149.95770 * 1 2 3 30 30 H 1.09000 * 109.46563 * 329.69165 * 6 5 4 31 31 H 1.09000 * 109.47062 * 209.69295 * 6 5 4 32 32 H 1.09004 * 109.47103 * 60.00383 * 8 7 6 33 33 H 1.08998 * 109.47195 * 300.00198 * 8 7 6 34 34 H 0.96997 * 119.99638 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47149 * 60.00719 * 12 11 9 36 36 H 1.08998 * 109.47686 * 300.00064 * 12 11 9 37 37 H 0.96703 * 113.99848 * 46.79570 * 14 13 12 38 38 H 1.09007 * 113.46615 * 105.56627 * 15 13 12 39 39 H 1.08998 * 113.52551 * 335.13818 * 15 13 12 40 40 H 0.96999 * 119.99710 * 5.38439 * 20 19 17 41 41 H 1.09001 * 113.46851 * 87.44175 * 25 16 15 42 42 H 1.09001 * 113.47037 * 217.87480 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2623 1.0509 0.0000 4 7 3.5098 0.8483 0.0050 5 6 3.8937 -0.3876 -0.0013 6 6 5.3233 -0.8644 -0.0021 7 8 5.7758 -1.0156 1.3449 8 6 7.1270 -1.4669 1.4568 9 6 7.4962 -1.5909 2.9127 10 8 6.6824 -1.3191 3.7699 11 7 8.7310 -2.0029 3.2621 12 6 9.0899 -2.1228 4.6773 13 6 10.5367 -2.6062 4.7972 14 8 10.8375 -3.7144 3.9467 15 6 11.0274 -2.7709 6.2423 16 7 12.3126 -2.1967 5.8163 17 6 13.6167 -2.2873 6.2244 18 1 13.8948 -2.9960 6.9905 19 6 14.5811 -1.4684 5.6534 20 7 15.8014 -1.4466 6.1460 21 14 14.1449 -0.3915 4.1906 22 1 15.3050 0.4693 3.8463 23 1 13.8034 -1.2501 3.0282 24 1 12.9798 0.4625 4.5346 25 6 11.5802 -1.4775 4.7632 26 16 2.5060 -1.3906 -0.0010 27 1 -0.3633 -0.0007 1.0276 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3633 -0.8896 -0.5145 30 1 5.9492 -0.1349 -0.5160 31 1 5.3861 -1.8234 -0.5163 32 1 7.7907 -0.7502 0.9731 33 1 7.2269 -2.4385 0.9730 34 1 9.3819 -2.2199 2.5765 35 1 8.4265 -2.8399 5.1609 36 1 8.9897 -1.1514 5.1613 37 1 10.5268 -3.6079 3.0372 38 1 11.1007 -3.8110 6.5600 39 1 10.4900 -2.1487 6.9579 40 1 16.0485 -2.0587 6.8568 41 1 11.1880 -0.5138 5.0880 42 1 12.1243 -1.4157 3.8208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754770708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:14 Heat of formation + Delta-G solvation = 16.299807 kcal Electronic energy + Delta-G solvation = -26326.274796 eV Core-core repulsion = 22244.254210 eV Total energy + Delta-G solvation = -4082.020586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76333 -40.28607 -39.26198 -38.02877 -35.36088 -34.25784 -33.90880 -32.31866 -31.14826 -29.68444 -28.11609 -26.93124 -25.58462 -25.50848 -24.72472 -21.61312 -20.96676 -20.43727 -19.84685 -19.69362 -18.20877 -17.62107 -17.45537 -16.75613 -16.48279 -16.22993 -15.94707 -15.65568 -15.15355 -15.03067 -14.62511 -14.17680 -14.00717 -13.81410 -13.68789 -13.63111 -13.31497 -13.22200 -13.08844 -12.75329 -12.63953 -12.45343 -12.08104 -11.67139 -11.06291 -10.95165 -10.75676 -10.58688 -10.39389 -10.31820 -10.29989 -10.14421 -10.13150 -9.95559 -9.35982 -9.24001 -8.98745 -8.89619 -7.19364 -6.34371 -3.24883 -0.15763 0.37203 0.84263 1.96100 2.37211 2.50324 3.26754 3.33541 3.38825 3.60252 3.69552 4.01965 4.16514 4.21411 4.38636 4.48143 4.55408 4.55878 4.64219 4.67318 4.73187 4.76893 4.81154 4.92142 4.97661 5.02613 5.28919 5.44554 5.48850 5.75651 5.96974 6.06847 6.08906 6.19696 6.29219 6.34307 6.48052 7.03837 7.17393 7.77218 7.97526 8.06983 8.21372 8.95011 9.46600 10.30470 11.18470 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.001797 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.371577 B =15577.299163 C =16001.623754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.017 4.017 3 N -0.262 5.262 4 N -0.235 5.235 5 C -0.024 4.024 6 C 0.144 3.856 7 O -0.355 6.355 8 C 0.044 3.956 9 C 0.515 3.485 10 O -0.515 6.515 11 N -0.726 5.726 12 C 0.108 3.892 13 C 0.070 3.930 14 O -0.518 6.518 15 C 0.139 3.861 16 N -0.617 5.617 17 C -0.301 4.301 18 H 0.084 0.916 19 C -0.026 4.026 20 N -0.934 5.934 21 Si 1.073 2.927 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.077 3.923 26 S 0.196 5.804 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.362 0.638 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.261 0.739 41 H 0.055 0.945 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.820 -2.820 -18.323 35.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.294 4.294 3 N -0.101 5.101 4 N -0.075 5.075 5 C -0.302 4.302 6 C 0.063 3.937 7 O -0.272 6.272 8 C -0.036 4.036 9 C 0.300 3.700 10 O -0.390 6.390 11 N -0.381 5.381 12 C -0.017 4.017 13 C 0.027 3.973 14 O -0.321 6.321 15 C 0.012 3.988 16 N -0.345 5.345 17 C -0.427 4.427 18 H 0.102 0.898 19 C -0.224 4.224 20 N -0.576 5.576 21 Si 0.906 3.094 22 H -0.222 1.222 23 H -0.223 1.223 24 H -0.215 1.215 25 C -0.049 4.049 26 S 0.439 5.561 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.208 0.792 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.312 -1.334 -17.869 34.355 hybrid contribution -0.257 -0.985 0.064 1.020 sum -29.569 -2.319 -17.806 34.594 Atomic orbital electron populations 1.20433 0.83647 1.04871 1.04687 1.29380 1.04601 0.91986 1.03466 1.71503 0.96732 1.26724 1.15150 1.71425 1.06617 1.17052 1.12406 1.28657 1.02149 0.92846 1.06583 1.20675 0.86696 1.00944 0.85385 1.88071 1.27127 1.88021 1.24012 1.22279 0.84813 1.01251 0.95275 1.20080 0.82084 0.77522 0.90345 1.90766 1.49122 1.47454 1.51623 1.45811 1.13733 1.69382 1.09221 1.21983 0.95919 1.02749 0.81013 1.23333 0.89887 0.88724 0.95332 1.86698 1.82121 1.40309 1.22994 1.22338 0.86986 0.98909 0.90550 1.45697 1.01530 1.52562 1.34680 1.20121 0.80133 1.21261 1.21142 0.89817 1.25733 0.93729 0.99841 1.03143 1.70917 1.19371 1.37807 1.29528 0.83655 0.74380 0.75866 0.75476 1.22191 1.22300 1.21478 1.23504 0.92152 0.94751 0.94523 1.83697 0.97181 1.11225 1.63951 0.88778 0.88600 0.89493 0.89120 0.90070 0.89294 0.89499 0.76720 0.90310 0.89735 0.79203 0.92436 0.92597 0.92883 0.92794 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.48 36.01 0.38 0.10 16 2 C -0.02 -0.13 7.53 -13.30 -0.10 -0.23 16 3 N -0.26 -3.04 11.66 32.58 0.38 -2.66 16 4 N -0.24 -2.90 11.66 32.58 0.38 -2.52 16 5 C -0.02 -0.22 7.16 -13.30 -0.10 -0.32 16 6 C 0.14 1.01 6.53 36.01 0.24 1.25 16 7 O -0.35 -3.68 9.86 -55.14 -0.54 -4.22 16 8 C 0.04 0.33 6.42 36.01 0.23 0.56 16 9 C 0.52 5.97 7.91 -10.98 -0.09 5.89 16 10 O -0.52 -8.56 16.50 -14.35 -0.24 -8.80 16 11 N -0.73 -7.44 5.34 -60.29 -0.32 -7.77 16 12 C 0.11 1.41 5.43 -4.04 -0.02 1.38 16 13 C 0.07 1.14 1.74 -89.97 -0.16 0.98 16 14 O -0.52 -8.21 13.56 -35.23 -0.48 -8.68 16 15 C 0.14 2.70 8.10 -8.52 -0.07 2.63 16 16 N -0.62 -15.12 3.69 -184.62 -0.68 -15.80 16 17 C -0.30 -8.74 11.08 -15.06 -0.17 -8.91 16 18 H 0.08 2.57 8.05 -52.48 -0.42 2.14 16 19 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 20 N -0.93 -29.60 13.70 55.49 0.76 -28.84 16 21 Si 1.07 26.57 25.13 -169.99 -4.27 22.30 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -6.81 6.64 56.52 0.38 -6.43 16 24 H -0.29 -6.59 6.13 56.52 0.35 -6.24 16 25 C 0.08 1.54 5.14 -8.39 -0.04 1.50 16 26 S 0.20 1.30 23.04 -107.50 -2.48 -1.17 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.40 2.87 6.95 -40.82 -0.28 2.59 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 37 H 0.36 3.77 7.21 45.56 0.33 4.09 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.99 8.10 -51.93 -0.42 0.56 16 40 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 41 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 42 H 0.06 1.14 4.67 -51.93 -0.24 0.90 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -41.37 369.41 -6.80 -48.16 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.88 Total: 0.47 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 0.01 Total: 3.96 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.52 Total: -57.59 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.26 Total: -21.70 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.27 Total: 22.30 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.48 Total: -1.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -41.37 -6.80 -48.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.463 kcal (2) G-P(sol) polarization free energy of solvation -41.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds