Wall clock time and date at job start Wed Apr 1 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29414 * 125.70440 * 2 1 4 4 N 1.26391 * 116.47968 * 179.74640 * 3 2 1 5 5 C 1.29414 * 116.47652 * 0.53665 * 4 3 2 6 6 C 1.50702 * 125.69819 * 179.76775 * 5 4 3 7 7 O 1.42900 * 109.47125 * 89.69102 * 6 5 4 8 8 C 1.42899 * 113.99773 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46904 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00210 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99862 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46928 * 179.97438 * 12 11 9 14 14 O 1.42899 * 113.41348 * 313.20372 * 13 12 11 15 15 C 1.53496 * 114.20479 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98324 * 220.34620 * 15 13 12 17 17 C 1.36944 * 136.05683 * 207.08528 * 16 15 13 18 18 H 1.08004 * 119.99874 * 6.90177 * 17 16 15 19 19 C 1.38808 * 119.99887 * 186.89762 * 17 16 15 20 20 N 1.31620 * 119.99758 * 172.36849 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 352.64805 * 19 17 16 22 22 H 1.48502 * 109.46980 * 175.03997 * 21 19 17 23 23 H 1.48501 * 109.46832 * 295.03703 * 21 19 17 24 24 H 1.48495 * 109.47214 * 55.03946 * 21 19 17 25 25 C 1.47058 * 87.88471 * 27.34220 * 16 15 13 26 26 S 1.71219 * 108.60575 * 359.50510 * 5 4 3 27 27 H 1.08995 * 109.47047 * 269.96037 * 1 2 3 28 28 H 1.09004 * 109.46615 * 29.95965 * 1 2 3 29 29 H 1.08993 * 109.46951 * 149.95770 * 1 2 3 30 30 H 1.09000 * 109.46563 * 329.69165 * 6 5 4 31 31 H 1.09000 * 109.47062 * 209.69295 * 6 5 4 32 32 H 1.09004 * 109.47103 * 60.00383 * 8 7 6 33 33 H 1.08998 * 109.47195 * 300.00198 * 8 7 6 34 34 H 0.96997 * 119.99638 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47149 * 60.00719 * 12 11 9 36 36 H 1.08998 * 109.47686 * 300.00064 * 12 11 9 37 37 H 0.96703 * 113.99848 * 46.79570 * 14 13 12 38 38 H 1.09007 * 113.46615 * 105.56627 * 15 13 12 39 39 H 1.08998 * 113.52551 * 335.13818 * 15 13 12 40 40 H 0.96999 * 119.99710 * 5.38439 * 20 19 17 41 41 H 1.09001 * 113.46851 * 87.44175 * 25 16 15 42 42 H 1.09001 * 113.47037 * 217.87480 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2623 1.0509 0.0000 4 7 3.5098 0.8483 0.0050 5 6 3.8937 -0.3876 -0.0013 6 6 5.3233 -0.8644 -0.0021 7 8 5.7758 -1.0156 1.3449 8 6 7.1270 -1.4669 1.4568 9 6 7.4962 -1.5909 2.9127 10 8 6.6824 -1.3191 3.7699 11 7 8.7310 -2.0029 3.2621 12 6 9.0899 -2.1228 4.6773 13 6 10.5367 -2.6062 4.7972 14 8 10.8375 -3.7144 3.9467 15 6 11.0274 -2.7709 6.2423 16 7 12.3126 -2.1967 5.8163 17 6 13.6167 -2.2873 6.2244 18 1 13.8948 -2.9960 6.9905 19 6 14.5811 -1.4684 5.6534 20 7 15.8014 -1.4466 6.1460 21 14 14.1449 -0.3915 4.1906 22 1 15.3050 0.4693 3.8463 23 1 13.8034 -1.2501 3.0282 24 1 12.9798 0.4625 4.5346 25 6 11.5802 -1.4775 4.7632 26 16 2.5060 -1.3906 -0.0010 27 1 -0.3633 -0.0007 1.0276 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3633 -0.8896 -0.5145 30 1 5.9492 -0.1349 -0.5160 31 1 5.3861 -1.8234 -0.5163 32 1 7.7907 -0.7502 0.9731 33 1 7.2269 -2.4385 0.9730 34 1 9.3819 -2.2199 2.5765 35 1 8.4265 -2.8399 5.1609 36 1 8.9897 -1.1514 5.1613 37 1 10.5268 -3.6079 3.0372 38 1 11.1007 -3.8110 6.5600 39 1 10.4900 -2.1487 6.9579 40 1 16.0485 -2.0587 6.8568 41 1 11.1880 -0.5138 5.0880 42 1 12.1243 -1.4157 3.8208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754770708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:13 Heat of formation + Delta-G solvation = -20.942781 kcal Electronic energy + Delta-G solvation = -26327.889756 eV Core-core repulsion = 22244.254210 eV Total energy + Delta-G solvation = -4083.635546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.40264 -41.40206 -40.42088 -38.72909 -36.77518 -35.31641 -34.44703 -34.41557 -31.70470 -30.85321 -29.24622 -27.69744 -27.16942 -26.68293 -25.25489 -23.29896 -21.84588 -21.25005 -21.01241 -20.43205 -19.74964 -18.92567 -18.23792 -17.76712 -17.32161 -17.05595 -16.85799 -16.48578 -16.31295 -16.01005 -15.77510 -15.63529 -15.17179 -15.03898 -14.71795 -14.47541 -14.28819 -14.08568 -13.97301 -13.59989 -13.47802 -13.36282 -13.08673 -12.97093 -12.83576 -12.38206 -11.90789 -11.77274 -11.55150 -11.33707 -11.33626 -11.04143 -11.01284 -10.81953 -10.79473 -10.65795 -10.62940 -10.19560 -9.22175 -8.67720 -5.48434 -0.70762 -0.13637 0.27032 1.31274 1.35285 1.48290 1.55012 1.67701 1.77481 2.54638 2.69699 2.87685 2.95895 3.15264 3.17994 3.31617 3.56029 3.70863 3.76542 3.83912 4.09524 4.23503 4.27483 4.30872 4.36763 4.45000 4.48632 4.57251 4.59588 4.64330 4.71317 4.73708 4.78726 5.02516 5.05236 5.15028 5.24684 5.83276 5.92512 6.42900 6.67486 6.78425 7.17281 7.30016 7.44985 8.22951 8.88047 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.001797 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.371577 B =15577.299163 C =16001.623754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.023 4.023 3 N -0.308 5.308 4 N -0.281 5.281 5 C -0.045 4.045 6 C 0.140 3.860 7 O -0.394 6.394 8 C 0.046 3.954 9 C 0.513 3.487 10 O -0.574 6.574 11 N -0.713 5.713 12 C 0.121 3.879 13 C 0.109 3.891 14 O -0.534 6.534 15 C 0.127 3.873 16 N -0.654 5.654 17 C -0.290 4.290 18 H 0.046 0.954 19 C -0.089 4.089 20 N -0.971 5.971 21 Si 1.113 2.887 22 H -0.307 1.307 23 H -0.265 1.265 24 H -0.258 1.258 25 C 0.068 3.932 26 S 0.254 5.746 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.416 0.584 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.388 0.612 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.244 0.756 41 H 0.067 0.933 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.457 -3.625 -21.272 38.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.301 4.301 3 N -0.147 5.147 4 N -0.120 5.120 5 C -0.324 4.324 6 C 0.061 3.939 7 O -0.312 6.312 8 C -0.033 4.033 9 C 0.300 3.700 10 O -0.452 6.452 11 N -0.369 5.369 12 C -0.004 4.004 13 C 0.066 3.934 14 O -0.342 6.342 15 C 0.001 3.999 16 N -0.382 5.382 17 C -0.418 4.418 18 H 0.064 0.936 19 C -0.280 4.280 20 N -0.616 5.616 21 Si 0.938 3.062 22 H -0.235 1.235 23 H -0.192 1.192 24 H -0.183 1.183 25 C -0.057 4.057 26 S 0.498 5.502 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.238 0.762 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -31.997 -2.180 -20.865 38.261 hybrid contribution 0.463 -0.904 1.052 1.462 sum -31.535 -3.083 -19.813 37.370 Atomic orbital electron populations 1.20675 0.81077 1.06364 1.05733 1.30028 1.06299 0.92100 1.01656 1.71444 0.97115 1.28739 1.17445 1.71365 1.07371 1.19073 1.14230 1.29171 1.04307 0.92923 1.06044 1.20980 0.85451 1.03131 0.84351 1.88002 1.28584 1.88634 1.26019 1.22461 0.84235 1.04386 0.92218 1.20879 0.81344 0.75911 0.91870 1.90748 1.50789 1.50055 1.53586 1.45631 1.14084 1.68839 1.08393 1.21634 0.93354 1.02436 0.82974 1.22668 0.90645 0.87024 0.93074 1.86657 1.82606 1.39934 1.24961 1.22641 0.85177 0.98561 0.93543 1.45770 1.01310 1.54221 1.36894 1.19964 0.83028 1.19461 1.19336 0.93606 1.27221 0.93206 1.01796 1.05789 1.71033 1.21069 1.39020 1.30488 0.83238 0.74804 0.74956 0.73198 1.23502 1.19174 1.18298 1.23774 0.92598 0.96220 0.93115 1.83375 0.95043 1.09255 1.62561 0.87757 0.88409 0.86699 0.88179 0.86186 0.86433 0.85121 0.74590 0.89894 0.90188 0.76169 0.93223 0.90462 0.94652 0.91587 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.48 71.24 0.75 0.32 16 2 C -0.02 -0.34 7.53 88.47 0.67 0.33 16 3 N -0.31 -7.19 11.66 -50.84 -0.59 -7.79 16 4 N -0.28 -6.92 11.66 -50.85 -0.59 -7.51 16 5 C -0.05 -0.79 7.16 88.47 0.63 -0.15 16 6 C 0.14 1.57 6.53 71.24 0.47 2.04 16 7 O -0.39 -7.08 9.86 -129.94 -1.28 -8.36 16 8 C 0.05 0.48 6.42 71.24 0.46 0.94 16 9 C 0.51 10.21 7.91 87.66 0.69 10.90 16 10 O -0.57 -18.14 16.50 16.01 0.26 -17.87 16 11 N -0.71 -11.67 5.34 -463.06 -2.47 -14.15 16 12 C 0.12 2.76 5.43 86.38 0.47 3.23 16 13 C 0.11 3.19 1.74 -10.37 -0.02 3.17 16 14 O -0.53 -15.00 13.56 -148.98 -2.02 -17.02 16 15 C 0.13 4.72 8.10 83.17 0.67 5.40 16 16 N -0.65 -31.45 3.69 -738.49 -2.73 -34.18 16 17 C -0.29 -17.26 11.08 84.03 0.93 -16.33 16 18 H 0.05 2.97 8.05 -2.91 -0.02 2.95 16 19 C -0.09 -5.39 5.50 84.86 0.47 -4.93 16 20 N -0.97 -63.66 13.70 21.65 0.30 -63.37 16 21 Si 1.11 52.53 25.13 68.60 1.72 54.26 16 22 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 23 H -0.27 -11.14 6.64 99.48 0.66 -10.48 16 24 H -0.26 -10.79 6.13 99.48 0.61 -10.18 16 25 C 0.07 2.52 5.14 83.26 0.43 2.95 16 26 S 0.25 2.83 23.04 -56.49 -1.30 1.53 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.42 3.82 6.95 -92.71 -0.64 3.17 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 37 H 0.39 6.19 7.21 -74.06 -0.53 5.66 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.08 2.57 8.10 -2.39 -0.02 2.56 16 40 H 0.24 16.17 8.73 -92.71 -0.81 15.36 16 41 H 0.07 2.34 7.50 -2.39 -0.02 2.32 16 42 H 0.06 2.11 4.67 -2.39 -0.01 2.10 16 Total: -1.00 -96.55 369.41 -2.37 -98.92 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.28 Total: 7.67 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.61 Total: 7.87 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -6.09 Total: -126.99 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -3.04 Total: -43.26 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 1.72 Total: 54.26 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.30 Total: 1.53 kcal Total: -96.55 -2.37 -98.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.982 kcal (2) G-P(sol) polarization free energy of solvation -96.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds