Wall clock time and date at job start Wed Apr 1 2020 00:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99551 * 3 2 1 5 5 H 1.48498 * 109.47482 * 29.99678 * 3 2 1 6 6 H 1.48503 * 109.47161 * 150.00233 * 3 2 1 7 7 C 1.38797 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00352 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99726 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99725 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47196 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99609 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00254 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00038 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47011 * 179.97438 * 14 13 11 16 16 H 1.08991 * 109.47354 * 304.99820 * 15 14 13 17 17 O 1.42901 * 109.46973 * 65.00607 * 15 14 13 18 18 C 1.53006 * 109.47037 * 185.00079 * 15 14 13 19 19 N 1.46501 * 109.47157 * 180.02562 * 18 15 14 20 20 C 1.34769 * 119.99854 * 180.02562 * 19 18 15 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 0.96997 * 120.00516 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47700 * 59.99736 * 10 9 7 31 31 H 1.09001 * 109.46810 * 299.99898 * 10 9 7 32 32 H 0.97000 * 119.99788 * 359.97438 * 13 11 10 33 33 H 1.09006 * 109.46910 * 60.00090 * 14 13 11 34 34 H 1.09005 * 109.47282 * 300.00368 * 14 13 11 35 35 H 0.96694 * 114.00238 * 60.00087 * 17 15 14 36 36 H 1.08999 * 109.47235 * 60.00133 * 18 15 14 37 37 H 1.09002 * 109.47410 * 300.00505 * 18 15 14 38 38 H 0.96999 * 119.99913 * 359.97438 * 19 18 15 39 39 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 40 40 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 41 41 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 42 42 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4705 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0868 -2.9844 0.0009 11 6 5.5732 -3.2323 0.0021 12 8 6.3441 -2.2960 0.0025 13 7 6.0460 -4.4944 0.0026 14 6 7.4910 -4.7354 0.0032 15 6 7.7567 -6.2422 0.0044 16 1 7.2392 -6.7017 0.8463 17 8 7.2791 -6.8110 -1.2165 18 6 9.2605 -6.4947 0.1307 19 7 9.5150 -7.9375 0.1312 20 6 10.7770 -8.3990 0.2340 21 8 11.7021 -7.6200 0.3257 22 6 11.0389 -9.8830 0.2340 23 6 12.5201 -10.1319 0.3585 24 6 13.4174 -10.1543 -0.6453 25 7 14.6251 -10.4020 -0.1168 26 6 14.5089 -10.5419 1.1754 27 7 13.2119 -10.3777 1.5139 28 1 12.8400 -10.4247 2.4085 29 1 -0.4851 0.8400 -0.0004 30 1 3.6442 -3.4313 -0.8892 31 1 3.6435 -3.4315 0.8907 32 1 5.4293 -5.2433 0.0026 33 1 7.9336 -4.2881 0.8933 34 1 7.9342 -4.2886 -0.8868 35 1 7.6970 -6.4482 -2.0094 36 1 9.6248 -6.0608 1.0619 37 1 9.7781 -6.0351 -0.7113 38 1 8.7751 -8.5605 0.0583 39 1 10.6752 -10.3162 -0.6977 40 1 10.5208 -10.3435 1.0753 41 1 13.2028 -9.9971 -1.6920 42 1 15.3169 -10.7497 1.8613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759588208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:11 Heat of formation + Delta-G solvation = -70.212357 kcal Electronic energy + Delta-G solvation = -25376.802581 eV Core-core repulsion = 21291.030546 eV Total energy + Delta-G solvation = -4085.772035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48356 -40.25369 -39.47685 -38.07639 -34.85225 -34.34555 -33.33193 -32.46592 -32.39502 -30.96805 -29.29897 -27.62721 -25.71956 -25.31271 -22.48227 -22.09176 -21.62556 -20.84997 -20.54221 -18.56327 -18.06670 -17.79809 -17.27907 -16.91042 -16.47813 -15.88133 -15.82529 -15.46889 -15.16942 -15.10959 -14.96480 -14.64786 -14.17983 -14.05242 -13.85662 -13.77158 -13.56214 -13.42162 -13.27678 -12.96780 -12.81867 -12.50270 -11.94807 -11.61387 -11.29778 -11.03188 -10.87441 -10.63621 -10.51373 -10.41182 -10.33764 -9.88540 -9.65063 -9.61964 -9.12628 -9.02072 -8.82172 -8.53825 -6.95370 -6.31532 -4.03786 1.51120 2.10389 2.44503 2.67307 2.74407 2.87931 2.88820 3.25481 3.31514 3.48233 3.58449 3.82077 4.02107 4.16809 4.23635 4.30691 4.36379 4.37312 4.47359 4.49795 4.71638 4.78683 4.99032 5.01258 5.07625 5.17222 5.18271 5.20720 5.44203 5.55904 5.72128 5.72438 5.80760 5.96993 6.29635 6.37344 6.87836 6.94317 7.03008 7.50500 7.64305 7.69087 7.91445 8.38787 8.39802 9.14588 10.77667 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.046342 B = 0.001399 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.064762 B =20005.849950 C =20306.093041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.732 5.732 14 C 0.093 3.907 15 C 0.087 3.913 16 H 0.114 0.886 17 O -0.555 6.555 18 C 0.090 3.910 19 N -0.724 5.724 20 C 0.510 3.490 21 O -0.526 6.526 22 C -0.063 4.063 23 C -0.012 4.012 24 C -0.005 4.005 25 N -0.494 5.494 26 C 0.189 3.811 27 N -0.563 5.563 28 H 0.418 0.582 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.404 0.596 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.382 0.618 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.406 0.594 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.167 0.833 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.980 -26.169 2.746 34.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.387 5.387 14 C -0.033 4.033 15 C 0.027 3.973 16 H 0.132 0.868 17 O -0.361 6.361 18 C -0.035 4.035 19 N -0.378 5.378 20 C 0.295 3.705 21 O -0.401 6.401 22 C -0.105 4.105 23 C -0.128 4.128 24 C -0.153 4.153 25 N -0.213 5.213 26 C -0.095 4.095 27 N -0.166 5.166 28 H 0.256 0.744 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.238 0.762 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.242 0.758 39 H 0.138 0.862 40 H 0.120 0.880 41 H 0.185 0.815 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 24.164 -24.309 2.729 34.385 hybrid contribution -2.027 -0.521 0.560 2.167 sum 22.137 -24.831 3.289 33.428 Atomic orbital electron populations 1.69935 1.05918 1.27799 1.47991 1.24707 0.94440 0.98952 0.93134 0.86738 0.81877 0.83289 0.79958 1.19186 1.19906 1.15957 1.22313 0.88220 0.97561 1.58901 0.89363 1.84803 1.09360 0.99963 1.97438 1.23270 0.93806 1.04457 1.05903 1.20318 0.90695 0.82154 0.75158 1.90711 1.58785 1.42215 1.47671 1.45804 1.06771 1.08315 1.77806 1.21834 0.83081 0.94661 1.03694 1.22386 0.92897 0.93099 0.88945 0.86843 1.86585 1.67486 1.66421 1.15578 1.21961 0.95855 0.81729 1.03948 1.45810 1.08449 1.07945 1.75572 1.20564 0.82603 0.90837 0.76505 1.90787 1.43106 1.58258 1.47973 1.20004 0.90824 0.93634 1.06003 1.20408 0.94291 1.11147 0.86916 1.22050 0.88034 1.05972 0.99264 1.70296 1.25462 1.18813 1.06746 1.24975 0.85617 1.04930 0.93981 1.43203 1.09162 1.54797 1.09486 0.74431 0.91914 0.88386 0.88420 0.76154 0.90334 0.90816 0.76924 0.90041 0.90477 0.75848 0.86205 0.88036 0.81525 0.77515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.59 27.74 -169.99 -4.72 16.87 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.88 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 11 C 0.53 8.88 7.85 -10.99 -0.09 8.79 16 12 O -0.52 -10.76 15.86 5.56 0.09 -10.68 16 13 N -0.73 -8.16 5.50 -60.29 -0.33 -8.49 16 14 C 0.09 0.80 5.31 -4.04 -0.02 0.78 16 15 C 0.09 0.45 3.09 -26.73 -0.08 0.37 16 16 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 17 O -0.55 -3.00 13.03 -35.23 -0.46 -3.46 16 18 C 0.09 0.50 5.34 -4.04 -0.02 0.48 16 19 N -0.72 -3.32 5.45 -60.29 -0.33 -3.65 16 20 C 0.51 3.43 7.82 -10.99 -0.09 3.34 16 21 O -0.53 -6.17 16.03 5.55 0.09 -6.08 16 22 C -0.06 -0.23 6.26 -29.03 -0.18 -0.41 16 23 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 24 C 0.00 -0.04 11.79 -17.81 -0.21 -0.25 16 25 N -0.49 -5.06 11.25 -14.66 -0.16 -5.22 16 26 C 0.19 1.27 13.04 -90.37 -1.18 0.09 16 27 N -0.56 -3.00 6.15 -10.30 -0.06 -3.06 16 28 H 0.42 0.88 8.96 -40.82 -0.37 0.51 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.40 3.58 8.47 -40.82 -0.35 3.23 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.38 1.35 9.04 45.56 0.41 1.76 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.41 0.98 8.35 -40.82 -0.34 0.64 16 39 H 0.12 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.21 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -40.97 382.97 -8.10 -49.07 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.87 Total: 1.31 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.90 Total: -1.31 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.11 Total: -45.96 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.28 Total: -20.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.87 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.97 -8.10 -49.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759588208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.145 kcal (2) G-P(sol) polarization free energy of solvation -40.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds