Wall clock time and date at job start Wed Apr 1 2020 00:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99551 * 3 2 1 5 5 H 1.48498 * 109.47482 * 29.99678 * 3 2 1 6 6 H 1.48503 * 109.47161 * 150.00233 * 3 2 1 7 7 C 1.38797 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00352 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99726 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99725 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47196 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99609 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00254 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00038 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47011 * 179.97438 * 14 13 11 16 16 H 1.08991 * 109.47354 * 304.99820 * 15 14 13 17 17 O 1.42901 * 109.46973 * 65.00607 * 15 14 13 18 18 C 1.53006 * 109.47037 * 185.00079 * 15 14 13 19 19 N 1.46501 * 109.47157 * 180.02562 * 18 15 14 20 20 C 1.34769 * 119.99854 * 180.02562 * 19 18 15 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 0.96997 * 120.00516 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47700 * 59.99736 * 10 9 7 31 31 H 1.09001 * 109.46810 * 299.99898 * 10 9 7 32 32 H 0.97000 * 119.99788 * 359.97438 * 13 11 10 33 33 H 1.09006 * 109.46910 * 60.00090 * 14 13 11 34 34 H 1.09005 * 109.47282 * 300.00368 * 14 13 11 35 35 H 0.96694 * 114.00238 * 60.00087 * 17 15 14 36 36 H 1.08999 * 109.47235 * 60.00133 * 18 15 14 37 37 H 1.09002 * 109.47410 * 300.00505 * 18 15 14 38 38 H 0.96999 * 119.99913 * 359.97438 * 19 18 15 39 39 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 40 40 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 41 41 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 42 42 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4705 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0868 -2.9844 0.0009 11 6 5.5732 -3.2323 0.0021 12 8 6.3441 -2.2960 0.0025 13 7 6.0460 -4.4944 0.0026 14 6 7.4910 -4.7354 0.0032 15 6 7.7567 -6.2422 0.0044 16 1 7.2392 -6.7017 0.8463 17 8 7.2791 -6.8110 -1.2165 18 6 9.2605 -6.4947 0.1307 19 7 9.5150 -7.9375 0.1312 20 6 10.7770 -8.3990 0.2340 21 8 11.7021 -7.6200 0.3257 22 6 11.0389 -9.8830 0.2340 23 6 12.5201 -10.1319 0.3585 24 6 13.4174 -10.1543 -0.6453 25 7 14.6251 -10.4020 -0.1168 26 6 14.5089 -10.5419 1.1754 27 7 13.2119 -10.3777 1.5139 28 1 12.8400 -10.4247 2.4085 29 1 -0.4851 0.8400 -0.0004 30 1 3.6442 -3.4313 -0.8892 31 1 3.6435 -3.4315 0.8907 32 1 5.4293 -5.2433 0.0026 33 1 7.9336 -4.2881 0.8933 34 1 7.9342 -4.2886 -0.8868 35 1 7.6970 -6.4482 -2.0094 36 1 9.6248 -6.0608 1.0619 37 1 9.7781 -6.0351 -0.7113 38 1 8.7751 -8.5605 0.0583 39 1 10.6752 -10.3162 -0.6977 40 1 10.5208 -10.3435 1.0753 41 1 13.2028 -9.9971 -1.6920 42 1 15.3169 -10.7497 1.8613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759588208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:11 Heat of formation + Delta-G solvation = -106.274636 kcal Electronic energy + Delta-G solvation = -25378.366359 eV Core-core repulsion = 21291.030546 eV Total energy + Delta-G solvation = -4087.335813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96674 -40.92845 -40.51125 -38.76529 -35.54644 -35.19987 -34.66942 -33.82086 -32.85665 -31.91478 -30.33475 -28.22465 -27.83779 -26.07612 -23.02368 -22.59360 -22.17024 -21.75745 -21.33871 -19.91677 -19.02638 -18.27251 -18.15759 -17.76766 -17.44479 -17.11889 -16.60187 -16.55974 -16.27927 -16.04774 -15.69492 -15.58172 -15.18173 -14.92352 -14.77829 -14.57057 -14.48673 -14.34189 -14.20806 -13.93365 -13.66400 -13.34467 -13.20677 -13.00059 -12.92727 -12.66296 -12.10079 -11.87611 -11.39307 -11.17126 -11.14714 -10.99841 -10.95592 -10.85034 -10.53389 -10.20827 -10.11514 -9.33031 -8.99591 -8.51535 -6.22380 0.98515 1.04221 1.31470 1.46611 1.54850 1.55718 1.62540 1.98412 2.21286 2.25095 2.28358 2.47775 2.72278 2.86960 3.37896 3.63555 3.64112 3.68733 3.92367 3.97309 3.99376 4.13820 4.15421 4.23671 4.40171 4.48385 4.56122 4.63483 4.66571 4.68314 4.73208 4.98671 5.25802 5.31857 5.40233 5.70768 5.78172 6.11634 6.44184 6.51833 6.59078 6.68166 6.93901 7.14088 7.18359 7.26142 8.60805 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.046342 B = 0.001399 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.064762 B =20005.849950 C =20306.093041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.705 5.705 14 C 0.088 3.912 15 C 0.111 3.889 16 H 0.131 0.869 17 O -0.558 6.558 18 C 0.093 3.907 19 N -0.708 5.708 20 C 0.509 3.491 21 O -0.583 6.583 22 C -0.056 4.056 23 C -0.008 4.008 24 C -0.044 4.044 25 N -0.544 5.544 26 C 0.186 3.814 27 N -0.554 5.554 28 H 0.434 0.566 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.419 0.581 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.421 0.579 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.166 0.834 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.218 -27.975 3.479 35.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.359 5.359 14 C -0.036 4.036 15 C 0.051 3.949 16 H 0.149 0.851 17 O -0.365 6.365 18 C -0.032 4.032 19 N -0.362 5.362 20 C 0.297 3.703 21 O -0.462 6.462 22 C -0.096 4.096 23 C -0.125 4.125 24 C -0.192 4.192 25 N -0.264 5.264 26 C -0.098 4.098 27 N -0.159 5.159 28 H 0.275 0.725 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.257 0.743 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.259 0.741 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.184 0.816 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 24.349 -26.199 3.467 35.934 hybrid contribution -2.073 -0.138 0.323 2.102 sum 22.276 -26.337 3.790 34.702 Atomic orbital electron populations 1.70012 1.07298 1.29014 1.49151 1.25541 0.95232 1.02185 0.92874 0.85880 0.80677 0.79696 0.80192 1.18745 1.18371 1.16111 1.22467 0.90259 0.96709 1.58259 0.91875 1.84734 1.06441 1.06394 1.97597 1.23269 0.95955 0.99457 1.07553 1.19945 0.89367 0.83396 0.75280 1.90704 1.59321 1.43945 1.50338 1.45539 1.08364 1.06758 1.75212 1.22040 0.80947 0.97308 1.03355 1.22145 0.92651 0.90519 0.89633 0.85111 1.86580 1.67661 1.66327 1.15956 1.21834 0.95872 0.82344 1.03192 1.45663 1.08433 1.07726 1.74337 1.21063 0.82286 0.91757 0.75237 1.90775 1.44818 1.59850 1.50790 1.20128 0.89120 0.91548 1.08851 1.20781 0.95562 1.09482 0.86652 1.22280 0.88676 1.08029 1.00179 1.70221 1.26673 1.20769 1.08742 1.25609 0.86884 1.03714 0.93576 1.43215 1.08742 1.53868 1.10055 0.72529 0.91377 0.86820 0.86704 0.74339 0.90806 0.91272 0.75837 0.90884 0.91461 0.74104 0.83664 0.84509 0.81642 0.74367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 13.97 21.65 0.30 -54.98 16 2 C 0.05 2.74 5.50 84.86 0.47 3.20 16 3 Si 0.91 44.57 27.74 68.60 1.90 46.47 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.56 6.74 99.48 0.67 -10.88 16 7 C -0.53 -30.38 10.04 67.95 0.68 -29.70 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 9 S -0.18 -8.82 18.55 -56.49 -1.05 -9.87 16 10 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 11 C 0.53 16.98 7.85 87.66 0.69 17.67 16 12 O -0.56 -22.97 15.86 -3.03 -0.05 -23.02 16 13 N -0.70 -13.82 5.50 -463.06 -2.55 -16.37 16 14 C 0.09 1.33 5.31 86.38 0.46 1.79 16 15 C 0.11 0.81 3.09 30.60 0.09 0.91 16 16 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 17 O -0.56 -4.10 13.03 -148.98 -1.94 -6.04 16 18 C 0.09 0.86 5.34 86.38 0.46 1.32 16 19 N -0.71 -4.55 5.45 -463.05 -2.52 -7.07 16 20 C 0.51 5.87 7.82 87.66 0.69 6.56 16 21 O -0.58 -13.44 16.03 -3.04 -0.05 -13.49 16 22 C -0.06 -0.25 6.26 29.10 0.18 -0.07 16 23 C -0.01 -0.10 5.73 40.95 0.23 0.14 16 24 C -0.04 -0.81 11.79 83.52 0.98 0.17 16 25 N -0.54 -11.38 11.25 -200.31 -2.25 -13.63 16 26 C 0.19 2.35 13.04 180.26 2.35 4.70 16 27 N -0.55 -5.04 6.15 -186.49 -1.15 -6.19 16 28 H 0.43 0.84 8.96 -92.71 -0.83 0.01 16 29 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 31 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.42 5.89 8.47 -92.71 -0.79 5.11 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.39 1.60 9.04 -74.06 -0.67 0.94 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.42 0.38 8.35 -92.71 -0.77 -0.40 16 39 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.14 -0.32 8.14 -2.38 -0.02 -0.34 16 41 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.24 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -91.99 382.97 -3.62 -95.61 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -1.99 Total: 5.43 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 7.73 Total: 3.16 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -8.17 Total: -98.25 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.04 Total: -42.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -91.99 -3.62 -95.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759588208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.667 kcal (2) G-P(sol) polarization free energy of solvation -91.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds