Wall clock time and date at job start Wed Apr 1 2020 01:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33323 * 126.10556 * 2 1 4 4 C 1.30859 * 109.68356 * 180.28338 * 3 2 1 5 5 N 1.34496 * 109.16228 * 359.75867 * 4 3 2 6 6 H 0.97002 * 126.46994 * 179.97438 * 5 4 3 7 7 C 1.36671 * 126.11063 * 179.88335 * 2 1 3 8 8 C 1.46768 * 126.84001 * 359.97438 * 7 2 1 9 9 O 1.21679 * 120.00019 * 359.71001 * 8 7 2 10 10 N 1.34767 * 119.99747 * 179.71051 * 8 7 2 11 11 C 1.46500 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47473 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47289 * 60.00327 * 12 11 10 14 14 O 1.42905 * 109.47264 * 300.00160 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 N 1.46505 * 109.47119 * 185.00149 * 15 12 11 17 17 C 1.34782 * 120.00001 * 179.97438 * 16 15 12 18 18 O 1.21278 * 119.99688 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99764 * 179.97438 * 17 16 15 20 20 S 1.81002 * 109.46992 * 179.97438 * 19 17 16 21 21 C 1.76191 * 99.99976 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00579 * 359.97438 * 21 20 19 23 23 C 1.38804 * 120.00162 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99571 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00286 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46803 * 59.99889 * 25 23 21 27 27 H 1.48500 * 109.47147 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47070 * 300.00066 * 25 23 21 29 29 H 1.09000 * 109.46649 * 270.11549 * 1 2 3 30 30 H 1.08997 * 109.47461 * 30.11767 * 1 2 3 31 31 H 1.09003 * 109.47025 * 150.11963 * 1 2 3 32 32 H 1.08004 * 125.41774 * 179.74792 * 4 3 2 33 33 H 0.97004 * 120.00402 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47049 * 60.00181 * 11 10 8 35 35 H 1.09002 * 109.47129 * 300.00254 * 11 10 8 36 36 H 0.96696 * 114.00036 * 299.99911 * 14 12 11 37 37 H 1.09000 * 109.47278 * 304.99661 * 15 12 11 38 38 H 1.08994 * 109.47510 * 65.00170 * 15 12 11 39 39 H 0.97002 * 120.00209 * 359.97438 * 16 15 12 40 40 H 1.09000 * 109.47421 * 299.99792 * 19 17 16 41 41 H 1.09004 * 109.46940 * 59.99787 * 19 17 16 42 42 H 0.96997 * 119.99863 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0061 5 7 3.6121 -0.6362 -0.0049 6 1 4.4188 -1.1748 -0.0088 7 6 2.3124 -1.1041 0.0022 8 6 1.8821 -2.5073 0.0056 9 8 0.6963 -2.7800 0.0120 10 7 2.8004 -3.4937 0.0017 11 6 2.3710 -4.8943 0.0056 12 6 3.6005 -5.8048 -0.0008 13 1 4.2036 -5.6073 0.8854 14 8 4.3774 -5.5481 -1.1725 15 6 3.1520 -7.2676 0.0027 16 7 4.3251 -8.1378 0.1170 17 6 4.1712 -9.4766 0.1407 18 8 3.0617 -9.9608 0.0679 19 6 5.3779 -10.3717 0.2577 20 16 4.8472 -12.1021 0.2635 21 6 6.4110 -12.9013 0.4062 22 1 7.3152 -12.3131 0.4598 23 6 6.4810 -14.2869 0.4486 24 7 5.3791 -15.0039 0.3817 25 14 8.1390 -15.1342 0.5991 26 1 8.8030 -14.7028 1.8553 27 1 7.9424 -16.6060 0.6226 28 1 8.9896 -14.7674 -0.5616 29 1 -0.3632 0.0021 1.0277 30 1 -0.3634 0.8889 -0.5156 31 1 -0.3633 -0.8911 -0.5120 32 1 4.3970 1.3745 -0.0114 33 1 3.7458 -3.2763 -0.0030 34 1 1.7684 -5.0921 -0.8809 35 1 1.7781 -5.0901 0.8991 36 1 3.9030 -5.7034 -2.0007 37 1 2.4868 -7.4416 0.8484 38 1 2.6250 -7.4883 -0.9255 39 1 5.2125 -7.7505 0.1756 40 1 6.0426 -10.1980 -0.5885 41 1 5.9056 -10.1507 1.1855 42 1 5.4280 -15.9722 0.4109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759589444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:07 Heat of formation + Delta-G solvation = -73.015760 kcal Electronic energy + Delta-G solvation = -25639.730229 eV Core-core repulsion = 21553.836630 eV Total energy + Delta-G solvation = -4085.893600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.75096 -40.08134 -39.33953 -38.02489 -35.10617 -34.28615 -33.64939 -32.46062 -31.79257 -30.86663 -29.20134 -27.70292 -25.82267 -25.38332 -23.40522 -22.50767 -21.67118 -20.50752 -20.24861 -19.36585 -18.04453 -17.49619 -16.91940 -16.73387 -16.37822 -16.12442 -15.88912 -15.40836 -15.18943 -14.95365 -14.83305 -14.67754 -14.39064 -14.00545 -13.89291 -13.38515 -13.23052 -13.16687 -13.14002 -12.76363 -12.59842 -12.50973 -11.83649 -11.62526 -11.08209 -11.06582 -10.98378 -10.87363 -10.76628 -10.55297 -10.35273 -9.86222 -9.76773 -9.51079 -9.10597 -9.03190 -9.00153 -8.28677 -6.54278 -6.24802 -3.95998 0.75265 2.26783 2.31848 2.46301 2.80934 2.96842 3.00080 3.20953 3.24644 3.27500 3.58474 3.80678 3.93091 4.15263 4.17194 4.21665 4.34166 4.47472 4.56538 4.71422 5.01653 5.08750 5.10358 5.12851 5.20348 5.41257 5.43178 5.51431 5.54267 5.60787 5.67311 5.77033 5.83219 6.08443 6.11157 6.44679 6.59960 6.82209 7.00235 7.38079 7.55737 7.58717 7.59823 8.31612 8.50785 9.20349 10.82559 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.001484 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.328910 B =18862.047244 C =19488.181792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.102 3.898 3 N -0.500 5.500 4 C 0.224 3.776 5 N -0.556 5.556 6 H 0.423 0.577 7 C -0.098 4.098 8 C 0.596 3.404 9 O -0.519 6.519 10 N -0.724 5.724 11 C 0.091 3.909 12 C 0.086 3.914 13 H 0.113 0.887 14 O -0.557 6.557 15 C 0.093 3.907 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.538 4.538 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.217 0.783 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.383 0.617 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.402 0.598 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 31.674 -1.231 31.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.220 5.220 4 C -0.060 4.060 5 N -0.161 5.161 6 H 0.262 0.738 7 C -0.213 4.213 8 C 0.382 3.618 9 O -0.394 6.394 10 N -0.376 5.376 11 C -0.034 4.034 12 C 0.026 3.974 13 H 0.131 0.869 14 O -0.363 6.363 15 C -0.032 4.032 16 N -0.390 5.390 17 C 0.318 3.682 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.686 4.686 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.919 31.380 -0.909 31.637 hybrid contribution 3.751 -0.856 -0.138 3.850 sum -0.168 30.525 -1.047 30.543 Atomic orbital electron populations 1.20327 0.86343 1.03827 1.03243 1.21147 0.97037 0.86574 0.98533 1.70185 1.00500 1.30427 1.20903 1.25214 0.97490 0.82019 1.01288 1.43346 1.07961 1.08885 1.55915 0.73815 1.20865 0.84467 0.94911 1.21097 1.16801 0.85804 0.82586 0.76568 1.90857 1.15955 1.82834 1.49802 1.45693 1.09567 1.06045 1.76297 1.22018 0.97053 0.79894 1.04417 1.22404 0.92288 0.92639 0.90074 0.86896 1.86568 1.42885 1.90825 1.16013 1.21807 0.89535 0.88248 1.03631 1.45850 1.09503 1.05953 1.77652 1.20348 0.91005 0.81662 0.75164 1.90714 1.26472 1.74473 1.47419 1.23525 0.98639 1.03288 1.04917 1.85402 1.12088 0.89653 1.96157 1.22827 0.92928 0.94056 1.58773 0.90955 1.24994 0.97728 0.96299 0.94501 1.70007 1.27116 1.06540 1.46584 0.86218 0.82269 0.78153 0.78823 1.19937 1.20777 1.19939 0.90556 0.90899 0.89213 0.76651 0.76698 0.90128 0.89511 0.76872 0.90238 0.90801 0.76369 0.89146 0.89193 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.88 36.00 0.36 -0.31 16 2 C 0.10 0.94 7.15 -82.51 -0.59 0.35 16 3 N -0.50 -4.40 11.20 -10.64 -0.12 -4.52 16 4 C 0.22 1.09 13.01 -90.57 -1.18 -0.09 16 5 N -0.56 -2.31 6.07 -10.79 -0.07 -2.37 16 6 H 0.42 0.30 8.32 -40.82 -0.34 -0.04 16 7 C -0.10 -0.77 7.08 -82.14 -0.58 -1.35 16 8 C 0.60 5.12 7.79 -12.82 -0.10 5.02 16 9 O -0.52 -6.15 14.82 5.21 0.08 -6.07 16 10 N -0.72 -4.10 5.44 -61.59 -0.34 -4.43 16 11 C 0.09 0.53 5.34 -4.04 -0.02 0.51 16 12 C 0.09 0.47 3.09 -26.73 -0.08 0.39 16 13 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 14 O -0.56 -3.12 13.03 -35.23 -0.46 -3.58 16 15 C 0.09 0.85 5.31 -4.04 -0.02 0.82 16 16 N -0.73 -8.60 5.50 -60.29 -0.33 -8.93 16 17 C 0.53 9.37 7.85 -10.98 -0.09 9.28 16 18 O -0.52 -11.27 15.86 5.56 0.09 -11.18 16 19 C -0.15 -2.98 6.16 36.01 0.22 -2.75 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 25 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.82 6.49 -51.93 -0.34 0.48 16 32 H 0.22 0.08 8.06 -52.48 -0.42 -0.34 16 33 H 0.40 1.38 7.59 -40.82 -0.31 1.07 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.38 1.45 9.04 45.56 0.41 1.86 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -39.36 381.59 -8.47 -47.83 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.69 Total: 1.32 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.88 Total: -0.94 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.12 Total: -45.42 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.29 Total: -20.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.36 -8.47 -47.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759589444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.183 kcal (2) G-P(sol) polarization free energy of solvation -39.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds