Wall clock time and date at job start Wed Apr 1 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33323 * 126.10556 * 2 1 4 4 C 1.30859 * 109.68356 * 180.28338 * 3 2 1 5 5 N 1.34496 * 109.16228 * 359.75867 * 4 3 2 6 6 H 0.97002 * 126.46994 * 179.97438 * 5 4 3 7 7 C 1.36671 * 126.11063 * 179.88335 * 2 1 3 8 8 C 1.46768 * 126.84001 * 359.97438 * 7 2 1 9 9 O 1.21679 * 120.00019 * 359.71001 * 8 7 2 10 10 N 1.34767 * 119.99747 * 179.71051 * 8 7 2 11 11 C 1.46500 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47473 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47289 * 60.00327 * 12 11 10 14 14 O 1.42905 * 109.47264 * 300.00160 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 N 1.46505 * 109.47119 * 185.00149 * 15 12 11 17 17 C 1.34782 * 120.00001 * 179.97438 * 16 15 12 18 18 O 1.21278 * 119.99688 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99764 * 179.97438 * 17 16 15 20 20 S 1.81002 * 109.46992 * 179.97438 * 19 17 16 21 21 C 1.76191 * 99.99976 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00579 * 359.97438 * 21 20 19 23 23 C 1.38804 * 120.00162 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99571 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00286 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46803 * 59.99889 * 25 23 21 27 27 H 1.48500 * 109.47147 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47070 * 300.00066 * 25 23 21 29 29 H 1.09000 * 109.46649 * 270.11549 * 1 2 3 30 30 H 1.08997 * 109.47461 * 30.11767 * 1 2 3 31 31 H 1.09003 * 109.47025 * 150.11963 * 1 2 3 32 32 H 1.08004 * 125.41774 * 179.74792 * 4 3 2 33 33 H 0.97004 * 120.00402 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47049 * 60.00181 * 11 10 8 35 35 H 1.09002 * 109.47129 * 300.00254 * 11 10 8 36 36 H 0.96696 * 114.00036 * 299.99911 * 14 12 11 37 37 H 1.09000 * 109.47278 * 304.99661 * 15 12 11 38 38 H 1.08994 * 109.47510 * 65.00170 * 15 12 11 39 39 H 0.97002 * 120.00209 * 359.97438 * 16 15 12 40 40 H 1.09000 * 109.47421 * 299.99792 * 19 17 16 41 41 H 1.09004 * 109.46940 * 59.99787 * 19 17 16 42 42 H 0.96997 * 119.99863 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0061 5 7 3.6121 -0.6362 -0.0049 6 1 4.4188 -1.1748 -0.0088 7 6 2.3124 -1.1041 0.0022 8 6 1.8821 -2.5073 0.0056 9 8 0.6963 -2.7800 0.0120 10 7 2.8004 -3.4937 0.0017 11 6 2.3710 -4.8943 0.0056 12 6 3.6005 -5.8048 -0.0008 13 1 4.2036 -5.6073 0.8854 14 8 4.3774 -5.5481 -1.1725 15 6 3.1520 -7.2676 0.0027 16 7 4.3251 -8.1378 0.1170 17 6 4.1712 -9.4766 0.1407 18 8 3.0617 -9.9608 0.0679 19 6 5.3779 -10.3717 0.2577 20 16 4.8472 -12.1021 0.2635 21 6 6.4110 -12.9013 0.4062 22 1 7.3152 -12.3131 0.4598 23 6 6.4810 -14.2869 0.4486 24 7 5.3791 -15.0039 0.3817 25 14 8.1390 -15.1342 0.5991 26 1 8.8030 -14.7028 1.8553 27 1 7.9424 -16.6060 0.6226 28 1 8.9896 -14.7674 -0.5616 29 1 -0.3632 0.0021 1.0277 30 1 -0.3634 0.8889 -0.5156 31 1 -0.3633 -0.8911 -0.5120 32 1 4.3970 1.3745 -0.0114 33 1 3.7458 -3.2763 -0.0030 34 1 1.7684 -5.0921 -0.8809 35 1 1.7781 -5.0901 0.8991 36 1 3.9030 -5.7034 -2.0007 37 1 2.4868 -7.4416 0.8484 38 1 2.6250 -7.4883 -0.9255 39 1 5.2125 -7.7505 0.1756 40 1 6.0426 -10.1980 -0.5885 41 1 5.9056 -10.1507 1.1855 42 1 5.4280 -15.9722 0.4109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759589444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:06 Heat of formation + Delta-G solvation = -107.235828 kcal Electronic energy + Delta-G solvation = -25641.214123 eV Core-core repulsion = 21553.836630 eV Total energy + Delta-G solvation = -4087.377493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.23065 -40.87616 -40.40009 -38.77206 -35.76350 -35.29559 -34.58077 -34.15039 -32.40014 -31.81590 -30.31590 -28.36888 -27.67781 -26.42274 -23.93582 -23.07967 -22.24001 -21.71939 -20.86665 -19.93677 -19.76459 -18.31006 -17.82974 -17.51468 -17.21588 -16.87794 -16.76673 -16.72085 -16.34146 -16.23254 -15.69349 -15.41966 -15.39722 -14.95691 -14.80100 -14.43565 -14.37840 -14.13866 -13.94398 -13.75868 -13.52135 -13.16918 -13.15203 -13.10925 -12.85887 -12.63207 -12.15004 -11.76449 -11.60490 -11.39465 -11.12730 -11.06629 -11.02636 -10.87776 -10.36247 -10.27895 -10.15493 -9.53122 -8.66810 -8.34457 -6.12757 0.21505 1.26233 1.44172 1.46383 1.55609 1.60141 1.77855 1.82867 2.03695 2.19854 2.27337 2.34601 2.99758 3.29834 3.34480 3.52644 3.58807 3.65337 3.82336 3.94694 4.03475 4.12930 4.28224 4.29153 4.39090 4.51820 4.63281 4.69238 4.71663 4.79241 4.93946 4.96146 5.01031 5.20165 5.38249 5.41766 5.52732 6.19591 6.26396 6.39787 6.47397 6.62735 6.90895 7.01875 7.06832 7.23192 8.74422 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.001484 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.328910 B =18862.047244 C =19488.181792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.540 5.540 4 C 0.242 3.758 5 N -0.539 5.539 6 H 0.441 0.559 7 C -0.109 4.109 8 C 0.594 3.406 9 O -0.560 6.560 10 N -0.706 5.706 11 C 0.093 3.907 12 C 0.111 3.889 13 H 0.131 0.869 14 O -0.559 6.559 15 C 0.089 3.911 16 N -0.705 5.705 17 C 0.533 3.467 18 O -0.567 6.567 19 C -0.130 4.130 20 S -0.153 6.153 21 C -0.548 4.548 22 H 0.084 0.916 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.262 0.738 33 H 0.413 0.587 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.392 0.608 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.418 0.582 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 33.572 -1.139 33.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 N -0.261 5.261 4 C -0.043 4.043 5 N -0.145 5.145 6 H 0.283 0.717 7 C -0.225 4.225 8 C 0.381 3.619 9 O -0.438 6.438 10 N -0.358 5.358 11 C -0.032 4.032 12 C 0.051 3.949 13 H 0.149 0.851 14 O -0.366 6.366 15 C -0.036 4.036 16 N -0.360 5.360 17 C 0.319 3.681 18 O -0.445 6.445 19 C -0.281 4.281 20 S 0.074 5.926 21 C -0.696 4.696 22 H 0.102 0.898 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.278 0.722 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.256 0.744 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.427 33.323 -0.826 33.336 hybrid contribution 2.706 -1.270 -0.191 2.995 sum 2.279 32.053 -1.017 32.150 Atomic orbital electron populations 1.20248 0.86836 1.03313 1.03035 1.21325 0.97451 0.87564 0.99645 1.70156 1.02205 1.30908 1.22828 1.26090 0.97482 0.82528 0.98198 1.43245 1.07397 1.08957 1.54894 0.71650 1.20672 0.85849 0.94157 1.21829 1.16948 0.85524 0.83288 0.76110 1.90838 1.17693 1.83463 1.51836 1.45495 1.09917 1.05398 1.75036 1.21949 0.97159 0.80004 1.04057 1.22139 0.92129 0.89745 0.90908 0.85138 1.86562 1.43031 1.90579 1.16436 1.22009 0.88453 0.89880 1.03284 1.45542 1.11357 1.04054 1.75040 1.20049 0.89487 0.83318 0.75223 1.90706 1.27876 1.75715 1.50206 1.23369 0.99757 0.98184 1.06784 1.85584 1.14142 0.96376 1.96490 1.23186 0.93121 0.94746 1.58558 0.89830 1.26126 1.02060 0.97124 0.93777 1.70179 1.29893 1.06839 1.47852 0.85008 0.76829 0.76705 0.79481 1.18630 1.20484 1.18652 0.90665 0.90513 0.90501 0.72218 0.75062 0.90574 0.90095 0.75764 0.90793 0.91228 0.74423 0.87204 0.87141 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.88 71.24 0.70 -0.66 16 2 C 0.07 1.38 7.15 41.96 0.30 1.68 16 3 N -0.54 -8.91 11.20 -187.58 -2.10 -11.01 16 4 C 0.24 1.66 13.01 180.33 2.35 4.01 16 5 N -0.54 -3.03 6.07 -188.04 -1.14 -4.17 16 6 H 0.44 -0.97 8.32 -92.71 -0.77 -1.74 16 7 C -0.11 -1.59 7.08 40.01 0.28 -1.30 16 8 C 0.59 9.81 7.79 86.47 0.67 10.49 16 9 O -0.56 -13.60 14.82 -4.28 -0.06 -13.66 16 10 N -0.71 -6.60 5.44 -467.01 -2.54 -9.14 16 11 C 0.09 0.94 5.34 86.38 0.46 1.40 16 12 C 0.11 0.90 3.09 30.59 0.09 1.00 16 13 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 14 O -0.56 -4.32 13.03 -148.98 -1.94 -6.26 16 15 C 0.09 1.44 5.31 86.38 0.46 1.90 16 16 N -0.71 -14.84 5.50 -463.06 -2.55 -17.38 16 17 C 0.53 18.26 7.85 87.66 0.69 18.94 16 18 O -0.57 -25.06 15.86 -3.02 -0.05 -25.11 16 19 C -0.13 -4.88 6.16 71.24 0.44 -4.45 16 20 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 21 C -0.55 -30.81 9.50 67.96 0.65 -30.16 16 22 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 23 C 0.01 0.78 5.49 84.86 0.47 1.25 16 24 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 25 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.54 6.49 -2.39 -0.02 1.52 16 32 H 0.26 -0.96 8.06 -2.91 -0.02 -0.99 16 33 H 0.41 1.54 7.59 -92.71 -0.70 0.84 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.39 1.78 9.04 -74.06 -0.67 1.11 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 6.26 8.47 -92.71 -0.79 5.47 16 40 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 41 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -89.83 381.59 -3.49 -93.32 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -1.82 Total: 9.16 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 7.56 Total: 4.10 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -8.05 Total: -96.92 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -2.05 Total: -45.03 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -89.83 -3.49 -93.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759589444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.918 kcal (2) G-P(sol) polarization free energy of solvation -89.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds