Wall clock time and date at job start Wed Apr 1 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46632 * 2 1 4 4 C 1.46504 * 120.00247 * 274.48723 * 3 2 1 5 5 C 1.50692 * 109.47130 * 275.00203 * 4 3 2 6 6 H 1.08001 * 120.00523 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99819 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00013 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00071 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47213 * 89.99908 * 9 7 5 11 11 H 1.48500 * 109.46760 * 210.00423 * 9 7 5 12 12 H 1.48499 * 109.46663 * 329.99951 * 9 7 5 13 13 S 1.65604 * 120.00102 * 94.49043 * 3 2 1 14 14 O 1.42103 * 106.39959 * 329.48528 * 13 3 2 15 15 O 1.42098 * 106.40436 * 196.56407 * 13 3 2 16 16 N 1.65602 * 107.21958 * 83.02285 * 13 3 2 17 17 C 1.46502 * 119.99519 * 67.24060 * 16 13 3 18 18 H 1.08991 * 110.35136 * 339.05285 * 17 16 13 19 19 C 1.54353 * 110.30001 * 216.92762 * 17 16 13 20 20 C 1.54352 * 102.39091 * 214.71949 * 19 17 16 21 21 C 1.51371 * 105.17142 * 26.35536 * 20 19 17 22 22 C 1.38465 * 130.36968 * 162.80713 * 21 20 19 23 23 C 1.38328 * 120.19501 * 179.97438 * 22 21 20 24 24 F 1.35102 * 120.05425 * 180.02562 * 23 22 21 25 25 C 1.38469 * 119.88391 * 0.02562 * 23 22 21 26 26 C 1.38068 * 119.91011 * 0.25212 * 25 23 22 27 27 C 1.38238 * 109.75665 * 342.81229 * 21 20 19 28 28 H 1.09001 * 109.47318 * 305.23383 * 1 2 3 29 29 H 1.08996 * 109.47362 * 65.24322 * 1 2 3 30 30 H 1.09009 * 109.46729 * 185.23956 * 1 2 3 31 31 H 1.09001 * 109.47298 * 240.00429 * 2 1 3 32 32 H 1.09000 * 109.47237 * 119.99793 * 2 1 3 33 33 H 1.08995 * 109.46836 * 35.00282 * 4 3 2 34 34 H 1.09005 * 109.47068 * 154.99987 * 4 3 2 35 35 H 0.97004 * 120.00206 * 179.97438 * 8 7 5 36 36 H 0.96995 * 120.00236 * 247.24804 * 16 13 3 37 37 H 1.09000 * 110.81868 * 332.94306 * 19 17 16 38 38 H 1.08989 * 110.82073 * 96.29848 * 19 17 16 39 39 H 1.09001 * 110.29762 * 267.43345 * 20 19 17 40 40 H 1.08994 * 110.30015 * 145.27810 * 20 19 17 41 41 H 1.07998 * 119.89630 * 0.02562 * 22 21 20 42 42 H 1.07997 * 120.04873 * 179.97438 * 25 23 22 43 43 H 1.07992 * 119.87841 * 179.72007 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1688 2.1050 -1.2648 5 6 3.5104 1.7834 -1.8710 6 1 4.1839 1.1078 -1.3646 7 6 3.8782 2.3517 -3.0722 8 7 5.0489 2.0707 -3.6015 9 14 2.7137 3.5208 -3.9478 10 1 2.9742 4.9107 -3.4946 11 1 2.9305 3.4293 -5.4141 12 1 1.3108 3.1515 -3.6308 13 16 2.4001 2.1245 1.4298 14 8 1.5463 1.5603 2.4158 15 8 2.4562 3.5176 1.1554 16 7 3.9405 1.6635 1.8259 17 6 5.0707 2.1028 1.0037 18 1 4.7275 2.3904 0.0101 19 6 6.1266 0.9816 0.9019 20 6 7.4502 1.7750 0.8697 21 6 7.1522 3.0720 1.5910 22 6 8.0098 4.0124 2.1365 23 6 7.5023 5.1395 2.7575 24 9 8.3416 6.0554 3.2883 25 6 6.1325 5.3272 2.8341 26 6 5.2775 4.3865 2.2952 27 6 5.7849 3.2604 1.6682 28 1 -0.3634 0.5929 0.8394 29 1 -0.3634 0.4303 -0.9332 30 1 -0.3633 -1.0235 0.0939 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3781 1.8040 -1.9520 34 1 2.1010 3.1772 -1.0802 35 1 5.3075 2.4702 -4.4467 36 1 4.0945 1.1026 2.6021 37 1 6.0861 0.3308 1.7754 38 1 5.9938 0.4064 -0.0143 39 1 7.7466 1.9744 -0.1601 40 1 8.2339 1.2244 1.3899 41 1 9.0781 3.8658 2.0762 42 1 5.7333 6.2059 3.3187 43 1 4.2092 4.5312 2.3592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336926607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:12 Heat of formation + Delta-G solvation = -99.108653 kcal Electronic energy + Delta-G solvation = -29236.314122 eV Core-core repulsion = 25129.369088 eV Total energy + Delta-G solvation = -4106.945034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.76744 -39.95951 -36.77687 -36.29177 -35.85725 -35.33340 -33.16328 -32.74315 -30.44406 -30.30232 -28.58416 -27.22361 -25.91509 -22.98561 -22.76743 -21.67387 -20.99174 -20.73340 -18.95067 -17.52668 -17.12407 -16.93667 -16.69951 -16.47194 -15.80559 -15.57045 -15.42221 -15.10044 -14.37282 -14.29202 -14.00543 -13.55871 -13.37625 -13.16140 -12.91346 -12.69064 -12.57113 -12.30751 -12.17635 -12.10814 -12.01950 -11.97269 -11.59626 -11.54176 -11.45425 -11.20799 -11.06212 -10.98381 -10.71218 -10.54404 -10.52843 -10.43592 -10.19618 -9.65496 -9.25215 -8.74734 -8.73157 -8.29371 -8.17461 -6.26345 -4.27035 1.11871 1.35893 1.41913 3.21506 3.28198 3.32355 3.39555 3.76500 4.04300 4.24022 4.28166 4.67189 4.77107 4.90047 5.05239 5.06076 5.21172 5.26713 5.35465 5.38011 5.42250 5.62033 5.67091 5.77174 5.85115 5.92730 5.98810 6.06540 6.16623 6.19633 6.21981 6.25116 6.37514 6.45286 6.49448 6.56434 6.65150 6.78178 6.81262 7.05299 7.07178 7.21936 7.41429 7.48811 8.29726 8.73331 9.35006 10.84631 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.005085 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.551096 B = 5505.015013 C = 6701.221593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.211 3.789 5 C -0.550 4.550 6 H 0.087 0.913 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.782 3.218 14 O -0.998 6.998 15 O -0.977 6.977 16 N -1.118 6.118 17 C 0.181 3.819 18 H 0.148 0.852 19 C -0.117 4.117 20 C -0.080 4.080 21 C -0.062 4.062 22 C -0.148 4.148 23 C 0.092 3.908 24 F -0.145 7.145 25 C -0.160 4.160 26 C -0.065 4.065 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.266 0.734 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -2.296 9.607 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.828 5.828 4 C 0.087 3.913 5 C -0.589 4.589 6 H 0.104 0.896 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.790 3.210 14 O -0.982 6.982 15 O -0.960 6.960 16 N -0.875 5.875 17 C 0.074 3.926 18 H 0.165 0.835 19 C -0.156 4.156 20 C -0.118 4.118 21 C -0.062 4.062 22 C -0.167 4.167 23 C 0.073 3.927 24 F -0.124 7.124 25 C -0.178 4.178 26 C -0.083 4.083 27 C -0.110 4.110 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.342 -1.520 9.787 9.995 hybrid contribution 0.052 0.428 -0.436 0.614 sum 1.393 -1.092 9.351 9.517 Atomic orbital electron populations 1.22233 0.96893 1.01583 1.02357 1.21002 0.93572 0.82485 1.02509 1.57521 1.78969 1.23132 1.23153 1.19627 0.98256 0.92361 0.81029 1.21464 1.00870 1.29744 1.06788 0.89552 1.24821 0.94901 0.95791 0.96798 1.69861 1.19980 1.43417 1.19146 0.86979 0.82175 0.82310 0.79178 1.19667 1.21049 1.18812 1.01870 0.72690 0.73843 0.72618 1.93564 1.64668 1.80134 1.59790 1.93564 1.86535 1.30876 1.85059 1.56066 1.24330 1.67660 1.39443 1.20761 0.85958 0.90256 0.95626 0.83503 1.22568 0.92674 0.96941 1.03447 1.21075 0.98296 0.91608 1.00786 1.20408 0.93347 0.96231 0.96257 1.20434 1.00387 0.93932 1.01970 1.17488 0.87681 0.88423 0.99099 1.91465 1.71225 1.65267 1.84418 1.21006 0.91322 1.01336 1.04183 1.20740 1.00850 0.91798 0.94939 1.21119 0.94695 0.96720 0.98490 0.92374 0.92339 0.92193 0.89788 0.91841 0.94486 0.93779 0.92364 0.76043 0.90952 0.88704 0.88760 0.90583 0.85209 0.84878 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.13 2.05 6.05 -4.04 -0.02 2.03 16 3 N -0.99 -18.30 2.82 -115.66 -0.33 -18.63 16 4 C 0.21 4.56 4.47 -5.20 -0.02 4.53 16 5 C -0.55 -13.19 8.02 -34.44 -0.28 -13.47 16 6 H 0.09 2.11 7.00 -52.49 -0.37 1.75 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -23.92 13.96 55.43 0.77 -23.15 16 9 Si 0.87 19.86 27.47 -169.99 -4.67 15.19 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 13 S 2.78 50.64 5.99 -107.50 -0.64 49.99 16 14 O -1.00 -18.99 17.12 -57.17 -0.98 -19.97 16 15 O -0.98 -20.38 14.79 -57.17 -0.85 -21.23 16 16 N -1.12 -17.14 5.55 -4.99 -0.03 -17.17 16 17 C 0.18 3.00 3.21 -68.04 -0.22 2.78 16 18 H 0.15 2.96 5.00 -51.93 -0.26 2.71 16 19 C -0.12 -1.63 6.77 -25.31 -0.17 -1.80 16 20 C -0.08 -1.06 6.77 -26.85 -0.18 -1.25 16 21 C -0.06 -0.92 6.14 -104.21 -0.64 -1.56 16 22 C -0.15 -2.09 10.02 -39.46 -0.40 -2.49 16 23 C 0.09 1.36 7.30 -39.46 -0.29 1.07 16 24 F -0.15 -2.10 17.27 2.25 0.04 -2.06 16 25 C -0.16 -2.37 10.03 -39.56 -0.40 -2.76 16 26 C -0.06 -1.07 9.99 -39.54 -0.40 -1.46 16 27 C -0.11 -1.79 5.79 -104.19 -0.60 -2.39 16 28 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 33 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 34 H 0.04 1.01 6.30 -51.93 -0.33 0.68 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.41 5.09 8.72 -34.47 -0.30 4.78 16 37 H 0.07 0.84 7.92 -51.93 -0.41 0.42 16 38 H 0.09 1.42 8.01 -51.94 -0.42 1.00 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.14 2.37 6.50 -52.49 -0.34 2.02 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -29.04 363.39 -10.27 -39.30 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.73 Total: 9.11 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.33 Total: -16.86 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.42 Total: -58.95 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.82 Total: -41.20 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Atomic # 16 Polarization: 50.64 SS G_CDS: -0.64 Total: 49.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.04 -10.27 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336926607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.804 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds