Wall clock time and date at job start Wed Apr 1 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47338 * 2 1 4 4 C 1.46499 * 120.00471 * 84.99755 * 3 2 1 5 5 C 1.50701 * 109.47260 * 275.00665 * 4 3 2 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99694 * 180.27562 * 5 4 3 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 S 1.65603 * 119.99916 * 265.00339 * 3 2 1 14 14 O 1.42100 * 106.40487 * 23.53428 * 13 3 2 15 15 O 1.42102 * 106.40550 * 156.46009 * 13 3 2 16 16 N 1.65605 * 107.21743 * 269.99767 * 13 3 2 17 17 C 1.46503 * 119.99894 * 65.00090 * 16 13 3 18 18 H 1.08999 * 110.43609 * 24.29359 * 17 16 13 19 19 C 1.54893 * 110.48179 * 261.75928 * 17 16 13 20 20 C 1.54893 * 102.74470 * 203.37799 * 19 17 16 21 21 C 1.54263 * 104.19540 * 37.94332 * 20 19 17 22 22 C 1.54086 * 106.62378 * 336.27831 * 21 20 19 23 23 H 1.08993 * 110.00949 * 119.38071 * 22 21 20 24 24 O 1.42897 * 110.15754 * 240.88260 * 22 21 20 25 25 C 1.42901 * 113.99810 * 267.11002 * 24 22 21 26 26 F 1.39901 * 109.47186 * 300.00221 * 25 24 22 27 27 F 1.39896 * 109.47335 * 60.00728 * 25 24 22 28 28 H 1.09006 * 109.47273 * 59.99883 * 1 2 3 29 29 H 1.08998 * 109.47543 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47166 * 300.00390 * 1 2 3 31 31 H 1.09005 * 109.46668 * 239.99714 * 2 1 3 32 32 H 1.08999 * 109.46953 * 120.00338 * 2 1 3 33 33 H 1.09000 * 109.47197 * 154.99670 * 4 3 2 34 34 H 1.09007 * 109.46342 * 35.00243 * 4 3 2 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99953 * 244.99938 * 16 13 3 37 37 H 1.08996 * 110.76092 * 321.68907 * 19 17 16 38 38 H 1.09004 * 110.75815 * 84.88330 * 19 17 16 39 39 H 1.09005 * 110.48688 * 156.61855 * 20 19 17 40 40 H 1.08998 * 110.48728 * 279.12994 * 20 19 17 41 41 H 1.09005 * 110.03522 * 95.67462 * 21 20 19 42 42 H 1.09006 * 110.03230 * 217.05288 * 21 20 19 43 43 H 1.09005 * 109.46945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7289 1.6356 6 1 -0.0226 2.5948 0.9943 7 6 0.7241 3.4725 2.7911 8 7 1.7697 3.6360 3.5719 9 14 -0.9130 4.2477 3.2479 10 1 -1.9236 3.9171 2.2114 11 1 -1.3606 3.7208 4.5622 12 1 -0.7560 5.7219 3.3332 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4449 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.4657 0.4412 -1.9570 18 1 3.6450 -0.1677 -2.3364 19 6 5.0444 -0.1769 -0.6600 20 6 5.9789 -1.2886 -1.1986 21 6 6.6136 -0.6703 -2.4614 22 6 5.6492 0.4293 -2.9463 23 1 6.1520 1.3963 -2.9386 24 8 5.1831 0.1297 -4.2635 25 6 5.9628 0.7217 -5.3045 26 9 5.9445 2.1137 -5.1668 27 9 7.2813 0.2618 -5.2188 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9081 2.8918 1.1512 34 1 2.4690 1.4182 2.0480 35 1 1.6909 4.1595 4.3846 36 1 4.6541 2.5427 -1.7198 37 1 5.6112 0.5653 -0.0979 38 1 4.2497 -0.6004 -0.0458 39 1 6.7476 -1.5298 -0.4644 40 1 5.4045 -2.1788 -1.4548 41 1 7.5838 -0.2371 -2.2178 42 1 6.7281 -1.4318 -3.2329 43 1 5.5442 0.4471 -6.2728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337345430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:21 Heat of formation + Delta-G solvation = -244.124502 kcal Electronic energy + Delta-G solvation = -30124.179132 eV Core-core repulsion = 25580.176514 eV Total energy + Delta-G solvation = -4544.002618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.30321 -47.40645 -39.45606 -36.70288 -36.39004 -36.01931 -35.13886 -33.39797 -32.58478 -29.80730 -28.50138 -27.28521 -26.73417 -25.26632 -22.79431 -21.87231 -21.11444 -20.90347 -19.37013 -18.42782 -18.09501 -17.83088 -17.07367 -16.78949 -16.48124 -16.20881 -15.62069 -15.19577 -14.50627 -14.32352 -14.25436 -14.13167 -13.78587 -13.68729 -13.42904 -13.17767 -13.07178 -12.99773 -12.79431 -12.50205 -12.23203 -12.14705 -11.83999 -11.52179 -11.46954 -11.40853 -11.26123 -11.22450 -11.00194 -10.97291 -10.93581 -10.77587 -10.65333 -10.45431 -10.38166 -9.89069 -9.60963 -9.32869 -8.42809 -8.08734 -6.05136 -4.07778 1.22172 2.73024 3.31540 3.39405 3.39709 3.44467 3.51300 4.07321 4.12686 4.34901 4.36245 4.46278 4.60451 4.67360 4.93079 5.01348 5.11858 5.20193 5.28340 5.30553 5.33001 5.43355 5.54922 5.70403 5.76773 5.83979 5.85019 5.97658 6.05510 6.17266 6.22335 6.39303 6.46198 6.70627 6.99665 7.07175 7.26479 7.44108 7.64956 7.93190 8.22976 8.94771 9.57070 11.03634 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003423 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.577203 B = 8178.759888 C = 8463.605481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.134 3.866 3 N -0.990 5.990 4 C 0.259 3.741 5 C -0.524 4.524 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.778 3.222 14 O -0.993 6.993 15 O -0.964 6.964 16 N -1.128 6.128 17 C 0.155 3.845 18 H 0.109 0.891 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.140 4.140 22 C 0.069 3.931 23 H 0.084 0.916 24 O -0.372 6.372 25 C 0.402 3.598 26 F -0.207 7.207 27 F -0.210 7.210 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.304 -11.488 -13.322 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.786 3.214 14 O -0.976 6.976 15 O -0.948 6.948 16 N -0.884 5.884 17 C 0.046 3.954 18 H 0.127 0.873 19 C -0.180 4.180 20 C -0.158 4.158 21 C -0.179 4.179 22 C 0.010 3.990 23 H 0.102 0.898 24 O -0.293 6.293 25 C 0.310 3.690 26 F -0.189 7.189 27 F -0.192 7.192 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.508 -11.115 -13.744 20.563 hybrid contribution 0.025 0.912 0.627 1.107 sum 10.533 -10.203 -13.117 19.675 Atomic orbital electron populations 1.22258 0.96325 1.00832 1.03738 1.20985 0.94975 0.82368 1.00894 1.57746 1.78291 1.22938 1.24300 1.19039 0.97476 0.90912 0.78856 1.21576 0.96416 1.31520 1.06814 0.91848 1.24922 0.96787 0.96052 0.96289 1.69922 1.29217 1.40653 1.13803 0.86503 0.83913 0.79230 0.78165 1.19647 1.21046 1.20902 1.02071 0.72721 0.73415 0.73156 1.93544 1.70286 1.76433 1.57386 1.93645 1.85074 1.30398 1.85636 1.56393 1.30070 1.13428 1.88530 1.21590 0.96964 0.83145 0.93683 0.87336 1.23028 1.00034 0.98331 0.96643 1.22284 0.98925 0.98180 0.96437 1.22668 0.98230 0.98103 0.98872 1.23357 0.95564 0.99188 0.80848 0.89806 1.88505 1.53336 1.72000 1.15455 1.23197 0.76491 0.73993 0.95332 1.93076 1.96243 1.32902 1.96681 1.93066 1.40471 1.88565 1.97117 0.92811 0.93111 0.90242 0.92323 0.91031 0.94580 0.94699 0.92840 0.75521 0.89925 0.89617 0.90857 0.90907 0.90649 0.90182 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.83 37.16 0.37 -2.62 16 2 C 0.13 2.23 5.59 -4.04 -0.02 2.20 16 3 N -0.99 -19.61 2.86 -115.66 -0.33 -19.94 16 4 C 0.26 6.23 5.12 -5.19 -0.03 6.20 16 5 C -0.52 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.74 6.89 -52.49 -0.36 1.38 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 S 2.78 54.72 6.03 -107.50 -0.65 54.07 16 14 O -0.99 -20.67 16.49 -57.17 -0.94 -21.61 16 15 O -0.96 -23.14 17.11 -57.17 -0.98 -24.11 16 16 N -1.13 -16.71 5.64 -3.48 -0.02 -16.73 16 17 C 0.15 1.93 3.27 -66.27 -0.22 1.71 16 18 H 0.11 1.43 7.12 -51.93 -0.37 1.06 16 19 C -0.14 -1.51 6.58 -24.73 -0.16 -1.67 16 20 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 21 C -0.14 -1.24 6.01 -25.50 -0.15 -1.39 16 22 C 0.07 0.75 2.85 -25.50 -0.07 0.68 16 23 H 0.08 0.91 6.90 -51.93 -0.36 0.55 16 24 O -0.37 -4.15 10.20 -35.23 -0.36 -4.51 16 25 C 0.40 3.58 6.26 101.05 0.63 4.21 16 26 F -0.21 -2.30 16.66 2.25 0.04 -2.27 16 27 F -0.21 -1.96 16.61 2.25 0.04 -1.93 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.55 6.59 -51.93 -0.34 1.21 16 31 H 0.06 0.84 7.23 -51.93 -0.38 0.46 16 32 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 33 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 34 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.41 5.45 8.62 -34.47 -0.30 5.15 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.93 7.63 -51.93 -0.40 0.53 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 43 H 0.17 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -34.03 369.80 -8.36 -42.39 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.23 Total: 2.25 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.22 Total: -4.82 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.39 Total: -61.72 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.28 Total: -50.23 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 54.72 SS G_CDS: -0.65 Total: 54.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.03 -8.36 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337345430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.733 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds