Wall clock time and date at job start Wed Apr 1 2020 00:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00392 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99966 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47157 * 90.00092 * 8 6 4 10 10 H 1.48496 * 109.47225 * 210.00367 * 8 6 4 11 11 H 1.48502 * 109.47022 * 330.00490 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.46497 * 119.99968 * 299.99987 * 12 2 1 14 14 S 1.65601 * 119.99824 * 119.99747 * 12 2 1 15 15 O 1.42102 * 106.40028 * 203.53935 * 14 12 2 16 16 O 1.42093 * 106.40468 * 336.46210 * 14 12 2 17 17 N 1.65603 * 107.21673 * 90.00348 * 14 12 2 18 18 C 1.46497 * 120.00127 * 64.99741 * 17 14 12 19 19 H 1.08998 * 109.47494 * 24.99916 * 18 17 14 20 20 C 1.53002 * 109.47145 * 265.00243 * 18 17 14 21 21 C 1.53000 * 109.47156 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.47003 * 59.99901 * 21 20 18 23 23 C 1.52998 * 109.47151 * 299.99696 * 22 21 20 24 24 F 1.39903 * 109.47112 * 180.02562 * 23 22 21 25 25 F 1.39899 * 109.47640 * 300.00280 * 23 22 21 26 26 C 1.52998 * 109.46846 * 145.00247 * 18 17 14 27 27 H 1.08997 * 109.47524 * 60.00338 * 26 18 17 28 28 O 1.42893 * 109.47197 * 299.99625 * 26 18 17 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 0.96997 * 120.00462 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 34 34 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 35 35 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 36 36 H 0.97006 * 119.99932 * 245.00071 * 17 14 12 37 37 H 1.09004 * 109.46832 * 299.99764 * 20 18 17 38 38 H 1.08996 * 109.47638 * 59.99743 * 20 18 17 39 39 H 1.08999 * 109.46754 * 179.97438 * 21 20 18 40 40 H 1.08991 * 109.47045 * 299.99844 * 21 20 18 41 41 H 1.08997 * 109.47524 * 60.00449 * 22 21 20 42 42 H 1.09006 * 109.47254 * 180.02562 * 22 21 20 43 43 H 0.96701 * 114.00138 * 180.02562 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8021 0.8744 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1356 -1.4440 -1.8417 19 1 4.6087 -2.0614 -2.5692 20 6 5.0177 -2.0781 -0.4542 21 6 5.6366 -3.4772 -0.4787 22 6 7.1124 -3.3753 -0.8691 23 6 7.2302 -2.7413 -2.2565 24 9 8.5797 -2.6486 -2.6138 25 9 6.5544 -3.5338 -3.1905 26 6 6.6114 -1.3427 -2.2323 27 1 7.1384 -0.7254 -1.5048 28 8 6.7215 -0.7505 -3.5281 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.9040 -0.5275 4.4375 33 1 0.7375 -2.1444 -1.9994 34 1 2.4628 -2.5819 -1.9864 35 1 1.5295 -2.5969 -0.4709 36 1 5.0733 0.6551 -1.5282 37 1 5.5447 -1.4608 0.2733 38 1 3.9664 -2.1503 -0.1758 39 1 5.5529 -3.9287 0.5099 40 1 5.1100 -4.0947 -1.2063 41 1 7.6390 -2.7579 -0.1415 42 1 7.5532 -4.3721 -0.8870 43 1 7.6315 -0.6552 -3.8410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416629523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:45 Heat of formation + Delta-G solvation = -224.086770 kcal Electronic energy + Delta-G solvation = -31134.051531 eV Core-core repulsion = 26590.917815 eV Total energy + Delta-G solvation = -4543.133717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.18090 -47.16061 -38.90902 -36.78528 -36.49741 -35.92081 -35.35376 -33.90138 -32.58207 -30.09969 -29.32250 -28.67544 -25.77002 -25.11296 -22.85961 -22.75324 -20.98935 -20.42810 -19.00585 -18.08253 -17.77382 -17.53405 -17.04763 -16.64395 -16.53942 -16.11043 -15.66032 -15.35813 -14.87904 -14.45302 -14.16381 -13.74631 -13.63648 -13.59583 -13.45787 -13.26461 -13.16254 -12.94033 -12.90282 -12.40019 -12.30739 -12.17951 -12.00843 -11.86556 -11.69721 -11.60729 -11.50637 -11.26228 -11.13272 -10.98854 -10.92302 -10.72766 -10.49076 -10.17795 -10.12266 -9.65648 -9.45307 -9.32740 -8.71653 -8.16304 -6.23650 -4.24686 1.10870 3.18511 3.19756 3.32430 3.35112 3.51885 3.63914 3.87491 4.02645 4.06434 4.28194 4.33947 4.72889 4.82070 4.83998 4.95562 5.00888 5.09515 5.12596 5.33629 5.47407 5.48783 5.57216 5.69288 5.93300 5.99195 6.02873 6.13146 6.20745 6.28385 6.35333 6.45999 6.53787 6.60452 6.82420 7.11293 7.25709 7.27357 7.36697 7.58486 8.35068 8.77801 9.38066 10.87946 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.004683 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.709362 B = 5977.157146 C = 6885.412711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.527 4.527 5 H 0.087 0.913 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.985 5.985 13 C 0.100 3.900 14 S 2.786 3.214 15 O -0.988 6.988 16 O -0.983 6.983 17 N -1.113 6.113 18 C 0.168 3.832 19 H 0.101 0.899 20 C -0.150 4.150 21 C -0.119 4.119 22 C -0.160 4.160 23 C 0.259 3.741 24 F -0.202 7.202 25 F -0.188 7.188 26 C 0.070 3.930 27 H 0.092 0.908 28 O -0.539 6.539 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.414 0.586 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -4.522 -7.737 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.566 4.566 5 H 0.105 0.895 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.706 3.294 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.187 1.187 12 N -0.827 5.827 13 C -0.046 4.046 14 S 2.794 3.206 15 O -0.971 6.971 16 O -0.967 6.967 17 N -0.869 5.869 18 C 0.059 3.941 19 H 0.119 0.881 20 C -0.189 4.189 21 C -0.157 4.157 22 C -0.198 4.198 23 C 0.222 3.778 24 F -0.183 7.183 25 F -0.169 7.169 26 C 0.008 3.992 27 H 0.109 0.891 28 O -0.344 6.344 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.247 0.753 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.710 -4.176 -8.376 12.785 hybrid contribution 0.583 0.768 0.646 1.161 sum 9.293 -3.408 -7.730 12.559 Atomic orbital electron populations 1.22410 0.98822 1.01365 0.99155 1.19099 0.91011 0.93453 0.83084 0.92548 1.21227 1.32799 1.14413 0.88180 0.89486 1.24859 0.95474 0.96452 0.95790 1.69852 1.45102 1.40063 0.97979 0.87039 0.80865 0.84036 0.77496 1.20358 1.22285 1.18664 1.57507 1.64651 1.21575 1.38934 1.21325 0.99356 0.81642 1.02326 1.01744 0.72498 0.73034 0.73302 1.93574 1.85814 1.76187 1.41542 1.93585 1.83697 1.32506 1.86908 1.55877 1.32050 1.13958 1.85011 1.20652 0.90854 0.84441 0.98141 0.88059 1.22382 1.05710 0.95316 0.95516 1.21533 0.92518 0.98075 1.03611 1.22608 1.00821 1.03171 0.93193 1.21984 0.74467 0.92820 0.88537 1.92993 1.35063 1.96913 1.93375 1.93028 1.79779 1.75879 1.68249 1.23081 0.98420 0.90087 0.87620 0.89050 1.86687 1.32647 1.82742 1.32298 0.92248 0.93364 0.94729 0.92461 0.93536 0.92891 0.89528 0.75280 0.89959 0.87193 0.89215 0.90637 0.88410 0.89098 0.77162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.67 37.16 0.32 -2.95 16 2 C 0.24 5.17 2.21 -69.08 -0.15 5.02 16 3 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 4 C -0.53 -12.63 8.57 -34.44 -0.30 -12.93 16 5 H 0.09 2.13 5.83 -52.49 -0.31 1.82 16 6 C 0.08 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.89 -24.46 13.96 55.43 0.77 -23.69 16 8 Si 0.88 20.42 24.37 -169.99 -4.14 16.28 16 9 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 10 H -0.30 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.04 6.53 56.52 0.37 -5.67 16 12 N -0.98 -18.46 2.79 -115.85 -0.32 -18.79 16 13 C 0.10 1.61 8.14 59.85 0.49 2.09 16 14 S 2.79 51.99 6.08 -107.50 -0.65 51.33 16 15 O -0.99 -19.99 16.55 -57.17 -0.95 -20.93 16 16 O -0.98 -21.14 16.70 -57.17 -0.95 -22.09 16 17 N -1.11 -16.91 5.39 -4.89 -0.03 -16.93 16 18 C 0.17 2.28 2.38 -67.93 -0.16 2.12 16 19 H 0.10 1.50 6.72 -51.93 -0.35 1.15 16 20 C -0.15 -1.94 5.53 -26.73 -0.15 -2.08 16 21 C -0.12 -1.24 5.80 -26.73 -0.16 -1.40 16 22 C -0.16 -1.47 5.45 -26.73 -0.15 -1.62 16 23 C 0.26 2.87 1.79 -26.75 -0.05 2.82 16 24 F -0.20 -2.23 16.68 2.25 0.04 -2.19 16 25 F -0.19 -2.50 15.97 2.25 0.04 -2.47 16 26 C 0.07 0.81 2.63 -26.75 -0.07 0.74 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 O -0.54 -6.66 13.13 -35.23 -0.46 -7.13 16 29 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 30 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 35 H 0.09 1.42 7.02 -51.93 -0.36 1.05 16 36 H 0.41 5.55 8.84 -34.47 -0.30 5.25 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.11 1.67 4.85 -51.93 -0.25 1.42 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.38 3.16 8.73 45.56 0.40 3.56 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -32.00 348.11 -6.86 -38.87 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.98 Total: 8.78 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.46 Total: -6.28 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.42 Total: -59.41 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -2.36 Total: -50.15 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.14 Total: 16.28 kcal Atomic # 16 Polarization: 51.99 SS G_CDS: -0.65 Total: 51.33 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.00 -6.86 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416629523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.218 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds