Wall clock time and date at job start Wed Apr 1 2020 00:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46682 * 2 1 4 4 O 1.45197 * 109.47525 * 240.00137 * 2 1 3 5 5 C 1.34790 * 117.00466 * 89.99794 * 4 2 1 6 6 O 1.21538 * 119.99478 * 359.97438 * 5 4 2 7 7 C 1.47150 * 120.00266 * 180.02562 * 5 4 2 8 8 C 1.39928 * 120.18262 * 5.53565 * 7 5 4 9 9 C 1.37762 * 119.92185 * 179.71904 * 8 7 5 10 10 F 1.35093 * 119.85494 * 180.27557 * 9 8 7 11 11 C 1.39098 * 120.28571 * 0.55526 * 9 8 7 12 12 F 1.35101 * 119.81715 * 179.69662 * 11 9 8 13 13 C 1.38223 * 120.36495 * 359.71967 * 11 9 8 14 14 C 1.38826 * 120.07531 * 359.97438 * 13 11 9 15 15 N 1.38942 * 120.14575 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.46919 * 119.99624 * 2 1 3 17 17 O 1.21286 * 119.99998 * 105.72963 * 16 2 1 18 18 N 1.34775 * 120.00398 * 285.72370 * 16 2 1 19 19 C 1.46501 * 119.99660 * 4.67717 * 18 16 2 20 20 C 1.46496 * 120.00315 * 184.39676 * 18 16 2 21 21 C 1.50699 * 109.47519 * 270.27921 * 20 18 16 22 22 H 1.08003 * 119.99540 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00326 * 179.97438 * 21 20 18 24 24 N 1.31517 * 120.00061 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 119.99965 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47334 * 60.00046 * 25 23 21 27 27 H 1.48507 * 109.47183 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47562 * 299.99825 * 25 23 21 29 29 H 1.09008 * 109.46970 * 51.14530 * 1 2 3 30 30 H 1.09003 * 109.47002 * 171.14024 * 1 2 3 31 31 H 1.08990 * 109.47459 * 291.14252 * 1 2 3 32 32 H 1.08009 * 120.03616 * 359.97438 * 8 7 5 33 33 H 1.07994 * 119.96251 * 179.97438 * 13 11 9 34 34 H 0.97004 * 120.00615 * 203.18320 * 15 14 13 35 35 H 0.97008 * 120.00165 * 23.18140 * 15 14 13 36 36 H 1.09006 * 109.46979 * 268.26663 * 19 18 16 37 37 H 1.08997 * 109.47348 * 28.26703 * 19 18 16 38 38 H 1.08996 * 109.47164 * 148.26967 * 19 18 16 39 39 H 1.08999 * 109.47003 * 30.27787 * 20 18 16 40 40 H 1.09007 * 109.47461 * 150.27587 * 20 18 16 41 41 H 0.96995 * 120.00041 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0141 -0.6844 -1.1855 5 6 2.2181 0.0671 -2.2857 6 8 1.9969 1.2618 -2.2550 7 6 2.7075 -0.5590 -3.5241 8 6 2.8522 -1.9487 -3.6003 9 6 3.3053 -2.5297 -4.7643 10 9 3.4393 -3.8719 -4.8381 11 6 3.6311 -1.7398 -5.8619 12 9 4.0804 -2.3191 -6.9967 13 6 3.4980 -0.3655 -5.7979 14 6 3.0368 0.2354 -4.6345 15 7 2.9020 1.6167 -4.5687 16 6 2.0323 -0.7103 1.2305 17 8 2.5029 -1.8243 1.1380 18 7 1.9587 -0.1077 2.4338 19 6 1.2983 1.1937 2.5620 20 6 2.5337 -0.7568 3.6145 21 6 1.4927 -1.6319 4.2638 22 1 0.5016 -1.6975 3.8395 23 6 1.8053 -2.3486 5.3993 24 7 3.0122 -2.2690 5.9157 25 14 0.5146 -3.4327 6.2044 26 1 0.0655 -4.4679 5.2391 27 1 1.0979 -4.0917 7.4006 28 1 -0.6455 -2.6008 6.6134 29 1 -0.3633 0.6448 -0.8003 30 1 -0.3633 -1.0154 -0.1583 31 1 -0.3634 0.3706 0.9584 32 1 2.6050 -2.5654 -2.7487 33 1 3.7532 0.2416 -6.6538 34 1 2.9125 2.0647 -3.7084 35 1 2.7974 2.1332 -5.3831 36 1 2.0349 1.9883 2.4427 37 1 0.5323 1.2898 1.7925 38 1 0.8363 1.2713 3.5462 39 1 3.3857 -1.3671 3.3149 40 1 2.8626 0.0034 4.3231 41 1 3.2321 -2.7730 6.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727192575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:06 Heat of formation + Delta-G solvation = -166.383855 kcal Electronic energy + Delta-G solvation = -29507.014804 eV Core-core repulsion = 24830.939323 eV Total energy + Delta-G solvation = -4676.075482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.74813 -48.73546 -41.06344 -39.56971 -38.61347 -36.57329 -34.94749 -34.63699 -32.93417 -32.04942 -31.14692 -28.97109 -27.75509 -26.23804 -25.11758 -24.19637 -23.32451 -22.37820 -21.17631 -18.99455 -18.79006 -18.32877 -17.92974 -17.32368 -16.72374 -16.60682 -16.54739 -16.14596 -16.07115 -15.72296 -15.40380 -15.16939 -15.02476 -14.62880 -14.52197 -14.33592 -13.86916 -13.76964 -13.37018 -13.15397 -13.02398 -12.73589 -12.52741 -12.19286 -12.10040 -11.96056 -11.70507 -11.41752 -11.23670 -10.93422 -10.87875 -10.78807 -10.58222 -10.55729 -10.18610 -9.69393 -9.51076 -8.95830 -8.46369 -8.15339 -7.76479 -6.07544 -4.12612 0.09885 0.76575 2.07568 2.30449 3.11050 3.17946 3.21292 3.30611 3.35406 3.39015 3.54876 3.80861 3.98372 4.12917 4.40906 4.43620 4.67852 4.75091 4.91116 4.99674 5.04296 5.19624 5.27145 5.34808 5.38283 5.44705 5.53823 5.59263 5.69191 5.83094 6.01630 6.18062 6.21984 6.28615 6.87555 6.94646 7.34061 7.35126 7.42362 7.55570 7.87852 8.17403 8.25028 8.80923 8.95557 9.52399 11.00679 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.002542 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.002117 B =11013.877785 C =12130.884700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.105 0.895 4 O -0.318 6.318 5 C 0.523 3.477 6 O -0.518 6.518 7 C -0.193 4.193 8 C -0.015 4.015 9 C -0.002 4.002 10 F -0.128 7.128 11 C 0.153 3.847 12 F -0.121 7.121 13 C -0.221 4.221 14 C 0.300 3.700 15 N -0.849 5.849 16 C 0.507 3.493 17 O -0.516 6.516 18 N -0.596 5.596 19 C 0.067 3.933 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.419 0.581 35 H 0.401 0.599 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 9.839 -23.039 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.232 6.232 5 C 0.370 3.630 6 O -0.409 6.409 7 C -0.199 4.199 8 C -0.034 4.034 9 C -0.024 4.024 10 F -0.107 7.107 11 C 0.132 3.868 12 F -0.099 7.099 13 C -0.245 4.245 14 C 0.188 3.812 15 N -0.393 5.393 16 C 0.291 3.709 17 O -0.391 6.391 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.129 3.871 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.727 3.273 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.257 0.743 35 H 0.231 0.769 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.440 9.455 -22.841 24.762 hybrid contribution -0.654 -0.431 0.348 0.857 sum -2.094 9.025 -22.492 24.326 Atomic orbital electron populations 1.22315 0.92172 1.04268 1.04102 1.22703 0.96013 0.97400 0.82444 0.87703 1.86685 1.76406 1.40791 1.19334 1.20674 0.73845 0.84778 0.83675 1.90604 1.50243 1.15952 1.84107 1.18428 1.15227 0.92774 0.93497 1.21307 0.91575 0.93958 0.96580 1.17175 1.11934 0.78241 0.95058 1.91545 1.94367 1.28083 1.96666 1.17625 0.96475 0.90848 0.81843 1.91558 1.85937 1.84621 1.47831 1.20423 1.11043 0.92500 1.00514 1.17239 0.87842 0.85096 0.91024 1.42992 1.79556 1.03086 1.13665 1.19754 0.80764 0.86641 0.83789 1.90720 1.44684 1.18188 1.85501 1.48082 1.56415 1.19929 1.08516 1.21977 0.97041 0.85088 1.03567 1.19349 0.94677 0.92921 0.80165 1.21367 0.98119 1.27045 1.10158 0.92407 1.24934 0.95611 0.96600 0.96916 1.69916 1.19189 1.42049 1.22200 0.86542 0.81369 0.80741 0.78677 1.20100 1.21157 1.20245 0.91120 0.90524 0.89001 0.81610 0.82900 0.74261 0.76935 0.93377 0.91588 0.90240 0.93801 0.94598 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.13 37.16 0.34 -1.87 16 2 C 0.07 1.13 2.17 -27.88 -0.06 1.07 16 3 H 0.11 1.46 6.71 -51.92 -0.35 1.11 16 4 O -0.32 -4.96 8.72 -47.30 -0.41 -5.37 16 5 C 0.52 6.90 7.84 34.35 0.27 7.17 16 6 O -0.52 -6.74 13.05 -19.30 -0.25 -6.99 16 7 C -0.19 -2.15 5.89 -104.82 -0.62 -2.77 16 8 C -0.01 -0.17 9.58 -39.12 -0.37 -0.54 16 9 C 0.00 -0.02 7.29 -39.44 -0.29 -0.31 16 10 F -0.13 -1.59 17.17 2.25 0.04 -1.55 16 11 C 0.15 1.48 7.30 -39.27 -0.29 1.19 16 12 F -0.12 -1.22 17.17 2.25 0.04 -1.19 16 13 C -0.22 -1.70 9.89 -39.37 -0.39 -2.09 16 14 C 0.30 2.66 6.76 -83.59 -0.57 2.10 16 15 N -0.85 -5.99 8.52 32.55 0.28 -5.71 16 16 C 0.51 10.47 6.99 -10.99 -0.08 10.40 16 17 O -0.52 -13.06 16.19 -13.66 -0.22 -13.28 16 18 N -0.60 -12.28 2.86 -182.96 -0.52 -12.81 16 19 C 0.07 1.00 9.85 59.85 0.59 1.59 16 20 C 0.25 6.34 5.13 -5.20 -0.03 6.32 16 21 C -0.53 -14.71 9.38 -34.44 -0.32 -15.04 16 22 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 25 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.11 5.54 -51.93 -0.29 0.83 16 32 H 0.17 1.92 7.62 -52.48 -0.40 1.52 16 33 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.42 3.53 6.04 -40.82 -0.25 3.28 16 35 H 0.40 1.63 8.90 -40.82 -0.36 1.26 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.80 4.23 -51.93 -0.22 0.58 16 38 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 39 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -33.64 361.78 -6.12 -39.76 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.33 Total: 1.79 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -1.91 Total: 8.86 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.49 Total: -44.10 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.89 Total: -25.64 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.64 -6.12 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727192575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.625 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds