Wall clock time and date at job start Wed Apr 1 2020 00:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47248 * 2 1 4 4 C 1.46494 * 119.99863 * 269.99945 * 3 2 1 5 5 C 1.50700 * 109.47456 * 270.00046 * 4 3 2 6 6 H 1.08002 * 119.99794 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00152 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99947 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00126 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46919 * 89.99803 * 9 7 5 11 11 H 1.48493 * 109.47143 * 209.99883 * 9 7 5 12 12 H 1.48503 * 109.46988 * 330.00347 * 9 7 5 13 13 C 1.34774 * 119.99768 * 90.00518 * 3 2 1 14 14 O 1.21283 * 120.00162 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00249 * 359.97438 * 13 3 2 16 16 N 1.46496 * 109.47133 * 180.02562 * 15 13 3 17 17 C 1.39033 * 119.99642 * 179.97438 * 16 15 13 18 18 C 1.39180 * 119.87365 * 180.02562 * 17 16 15 19 19 C 1.37850 * 120.11556 * 179.97438 * 18 17 16 20 20 F 1.35100 * 120.06107 * 180.02562 * 19 18 17 21 21 C 1.40184 * 119.88100 * 0.02562 * 19 18 17 22 22 C 1.47071 * 120.12094 * 180.02562 * 21 19 18 23 23 O 1.21553 * 120.00199 * 89.99822 * 22 21 19 24 24 O 1.34799 * 119.99888 * 269.72020 * 22 21 19 25 25 C 1.40192 * 119.75990 * 0.27165 * 21 19 18 26 26 F 1.35096 * 120.06205 * 179.72376 * 25 21 19 27 27 C 1.37851 * 119.87400 * 359.40934 * 25 21 19 28 28 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47112 * 299.99977 * 1 2 3 30 30 H 1.08998 * 109.47479 * 59.99479 * 1 2 3 31 31 H 1.09004 * 109.47112 * 240.00023 * 2 1 3 32 32 H 1.08998 * 109.47479 * 120.00521 * 2 1 3 33 33 H 1.09003 * 109.47224 * 30.00397 * 4 3 2 34 34 H 1.09004 * 109.46954 * 150.00358 * 4 3 2 35 35 H 0.96997 * 120.00034 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47103 * 60.00161 * 15 13 3 37 37 H 1.09001 * 109.47147 * 300.00866 * 15 13 3 38 38 H 0.96999 * 120.00001 * 0.02562 * 16 15 13 39 39 H 1.07994 * 119.94165 * 359.97438 * 18 17 16 40 40 H 0.96694 * 117.00339 * 180.26977 * 24 22 21 41 41 H 1.08003 * 119.93876 * 180.29342 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9137 2.0974 -3.4164 10 1 5.9775 0.8767 -4.2597 11 1 6.3926 3.2651 -4.1989 12 1 6.7736 1.9175 -2.2192 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3084 2.2039 3.5858 17 6 2.1529 1.7672 4.8966 18 6 2.4543 2.6223 5.9525 19 6 2.3015 2.1947 7.2541 20 9 2.5939 3.0259 8.2782 21 6 1.8421 0.8959 7.5131 22 6 1.6766 0.4344 8.8997 23 8 0.6157 0.5943 9.4710 24 8 2.6997 -0.1711 9.5352 25 6 1.5460 0.0367 6.4457 26 9 1.1083 -1.2182 6.6883 27 6 1.6962 0.4768 5.1480 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5816 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1383 35 1 3.6756 3.5178 -4.4430 36 1 2.6213 0.4185 2.5302 37 1 0.9433 1.0123 2.5299 38 1 2.6260 3.1031 3.4086 39 1 2.8085 3.6226 5.7518 40 1 2.5422 -0.4606 10.4442 41 1 1.4638 -0.1826 4.3248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:46 Heat of formation + Delta-G solvation = -183.562747 kcal Electronic energy + Delta-G solvation = -29044.779929 eV Core-core repulsion = 24367.959515 eV Total energy + Delta-G solvation = -4676.820414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.45775 -49.42940 -40.52271 -39.89607 -38.94257 -36.37950 -35.84554 -35.23574 -32.94559 -31.12109 -30.64577 -30.28675 -28.35224 -26.47998 -24.20690 -23.51015 -23.20903 -22.49274 -21.64474 -19.25205 -18.74093 -18.48493 -17.83687 -17.58537 -16.93388 -16.57639 -16.36883 -16.34921 -15.72367 -15.70171 -15.48614 -15.35762 -15.33378 -15.26536 -14.76698 -14.13962 -14.04612 -13.74926 -13.60434 -13.08934 -12.86323 -12.72593 -12.61868 -12.28041 -12.17741 -12.11343 -11.84019 -11.75938 -11.34463 -11.10073 -11.04157 -10.92150 -10.67379 -10.42024 -10.26732 -9.79349 -9.31912 -9.24045 -8.55351 -8.06517 -7.92903 -6.16606 -4.22195 0.57097 0.64398 1.70123 2.60267 2.73886 2.98574 3.04606 3.22254 3.29811 3.33149 3.43378 3.71109 3.91751 4.33824 4.44133 4.58049 4.61418 4.73293 4.81120 5.01168 5.10287 5.18408 5.22145 5.36567 5.39924 5.43679 5.44533 5.59384 5.67865 5.85633 6.06347 6.06577 6.13703 6.31882 6.64331 6.87481 7.22270 7.29937 7.32495 7.49214 7.78255 8.07594 8.12591 8.62976 8.83625 9.43464 10.91552 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002269 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.974921 B =12335.994280 C =12925.374524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.537 6.537 15 C 0.091 3.909 16 N -0.703 5.703 17 C 0.306 3.694 18 C -0.244 4.244 19 C 0.222 3.778 20 F -0.122 7.122 21 C -0.259 4.259 22 C 0.547 3.453 23 O -0.497 6.497 24 O -0.505 6.505 25 C 0.224 3.776 26 F -0.122 7.122 27 C -0.252 4.252 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.421 0.579 39 H 0.153 0.847 40 H 0.413 0.587 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -8.121 19.438 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.285 3.715 14 O -0.415 6.415 15 C -0.037 4.037 16 N -0.329 5.329 17 C 0.194 3.806 18 C -0.267 4.267 19 C 0.201 3.799 20 F -0.100 7.100 21 C -0.265 4.265 22 C 0.388 3.612 23 O -0.383 6.383 24 O -0.316 6.316 25 C 0.203 3.797 26 F -0.100 7.100 27 C -0.276 4.276 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.262 0.738 39 H 0.170 0.830 40 H 0.272 0.728 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.491 -7.353 18.793 20.674 hybrid contribution 0.932 -0.185 0.290 0.993 sum -3.559 -7.538 19.083 20.824 Atomic orbital electron populations 1.22234 0.96383 1.01809 1.02498 1.21523 0.93793 0.83803 1.03145 1.48243 1.62761 1.13406 1.07509 1.19351 0.96570 0.93664 0.77687 1.21382 0.96755 1.32272 1.06503 0.92415 1.24936 0.97972 0.94774 0.96345 1.69923 1.35797 1.33109 1.14325 0.86482 0.84445 0.77771 0.78645 1.20564 1.21029 1.19874 1.20010 0.79287 0.87090 0.85074 1.90688 1.46220 1.17931 1.86643 1.21470 1.02468 0.93793 0.85977 1.44611 1.69177 1.18050 1.01029 1.17175 0.87862 0.90858 0.84727 1.20391 1.14181 1.02945 0.89220 1.16626 0.93753 0.85353 0.84175 1.91564 1.90192 1.70404 1.57823 1.18427 1.21568 0.95956 0.90513 1.20272 0.81028 0.73710 0.86146 1.90936 1.27797 1.52398 1.67212 1.84711 1.42860 1.70698 1.33371 1.16663 0.93164 0.78419 0.91490 1.91562 1.86147 1.37134 1.95123 1.20452 1.14136 0.97337 0.95635 0.91800 0.93039 0.91807 0.89404 0.91582 0.94657 0.93735 0.92576 0.88649 0.88725 0.73816 0.82972 0.72842 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.15 0.38 -1.50 16 2 C 0.10 1.34 5.93 -4.04 -0.02 1.32 16 3 N -0.59 -10.75 2.46 -175.06 -0.43 -11.18 16 4 C 0.25 5.89 5.16 -5.20 -0.03 5.86 16 5 C -0.53 -14.07 9.39 -34.44 -0.32 -14.40 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.50 8.73 7.74 -10.99 -0.09 8.64 16 14 O -0.54 -11.64 15.25 5.56 0.08 -11.56 16 15 C 0.09 1.04 3.93 -5.19 -0.02 1.02 16 16 N -0.70 -7.90 5.68 -59.84 -0.34 -8.24 16 17 C 0.31 3.09 6.65 -83.90 -0.56 2.53 16 18 C -0.24 -2.40 9.84 -39.37 -0.39 -2.78 16 19 C 0.22 2.42 7.28 -38.99 -0.28 2.14 16 20 F -0.12 -1.38 16.83 2.25 0.04 -1.34 16 21 C -0.26 -2.98 5.76 -104.85 -0.60 -3.59 16 22 C 0.55 6.47 7.03 34.31 0.24 6.72 16 23 O -0.50 -7.11 17.90 -19.31 -0.35 -7.45 16 24 O -0.50 -4.46 13.44 -40.76 -0.55 -5.01 16 25 C 0.22 2.39 7.28 -38.99 -0.28 2.10 16 26 F -0.12 -1.33 16.83 2.25 0.04 -1.29 16 27 C -0.25 -2.39 9.25 -39.38 -0.36 -2.76 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.07 0.67 6.44 -51.93 -0.33 0.33 16 33 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.10 0.93 7.19 -51.93 -0.37 0.56 16 37 H 0.09 0.88 6.97 -51.93 -0.36 0.52 16 38 H 0.42 5.17 7.44 -40.82 -0.30 4.87 16 39 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.41 1.58 9.11 45.56 0.42 2.00 16 41 H 0.15 1.15 6.68 -52.48 -0.35 0.80 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -33.50 368.53 -6.39 -39.89 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.72 Total: 2.49 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -2.44 Total: 6.90 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.03 Total: -44.09 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.81 Total: -24.02 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.50 -6.39 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.670 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds