Wall clock time and date at job start Wed Apr 1 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99911 * 2 1 4 4 H 1.48499 * 109.47232 * 274.35314 * 3 2 1 5 5 H 1.48501 * 109.47373 * 34.35372 * 3 2 1 6 6 H 1.48502 * 109.46943 * 154.35605 * 3 2 1 7 7 C 1.38815 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99867 * 162.59004 * 7 2 1 9 9 N 1.36936 * 120.00132 * 342.59672 * 7 2 1 10 10 C 1.46929 * 120.62881 * 332.30359 * 9 7 2 11 11 C 1.53186 * 108.76599 * 233.59786 * 10 9 7 12 12 C 1.53038 * 109.31384 * 305.34229 * 11 10 9 13 13 H 1.09003 * 109.46082 * 301.37659 * 12 11 10 14 14 N 1.46493 * 109.46361 * 181.39902 * 12 11 10 15 15 C 1.34772 * 119.99998 * 84.97273 * 14 12 11 16 16 O 1.21477 * 120.00292 * 0.02562 * 15 14 12 17 17 C 1.48454 * 120.00343 * 180.27641 * 15 14 12 18 18 C 1.39534 * 120.55657 * 179.44912 * 17 15 14 19 19 C 1.38759 * 118.27041 * 179.78484 * 18 17 15 20 20 C 1.50692 * 120.42850 * 180.23666 * 19 18 17 21 21 F 1.39905 * 109.47002 * 210.25395 * 20 19 18 22 22 F 1.39896 * 109.47242 * 330.25439 * 20 19 18 23 23 N 1.32212 * 119.14238 * 0.49227 * 19 18 17 24 24 C 1.31879 * 121.03662 * 359.74036 * 23 19 18 25 25 N 1.31583 * 121.92061 * 0.02562 * 24 23 19 26 26 C 1.53043 * 109.52683 * 61.38493 * 12 11 10 27 27 H 1.09004 * 109.49825 * 58.57746 * 26 12 11 28 28 O 1.42896 * 109.50142 * 178.67800 * 26 12 11 29 29 C 1.46925 * 120.63158 * 152.28460 * 9 7 2 30 30 H 0.97003 * 120.00014 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58561 * 353.37889 * 10 9 7 32 32 H 1.09003 * 109.58586 * 113.65634 * 10 9 7 33 33 H 1.08999 * 109.48557 * 185.40090 * 11 10 9 34 34 H 1.08995 * 109.51314 * 65.30226 * 11 10 9 35 35 H 0.97001 * 120.00006 * 264.97626 * 14 12 11 36 36 H 1.08007 * 120.86619 * 0.02562 * 18 17 15 37 37 H 1.09000 * 109.47131 * 90.26132 * 20 19 18 38 38 H 1.08003 * 119.04300 * 180.02562 * 24 23 19 39 39 H 0.96695 * 113.99964 * 180.02562 * 28 26 12 40 40 H 1.08995 * 109.58498 * 6.62550 * 29 9 7 41 41 H 1.09000 * 109.69943 * 246.26856 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4056 2.0996 -1.3960 5 1 1.4967 2.6244 0.7901 6 1 3.5908 1.4153 0.6059 7 6 2.0103 -1.2022 -0.0005 8 1 3.0532 -1.2235 -0.2804 9 7 1.3726 -2.3611 0.3536 10 6 0.2290 -2.3346 1.2757 11 6 0.5032 -3.3048 2.4290 12 6 0.8199 -4.6900 1.8607 13 1 -0.0199 -5.0360 1.2580 14 7 1.0499 -5.6284 2.9618 15 6 0.0066 -6.2488 3.5475 16 8 -1.1245 -6.0302 3.1621 17 6 0.2391 -7.1952 4.6674 18 6 -0.8334 -7.8351 5.2897 19 6 -0.5614 -8.7137 6.3286 20 6 -1.6824 -9.4352 7.0313 21 9 -1.3211 -9.6750 8.3614 22 9 -2.8379 -8.6474 6.9967 23 7 0.6936 -8.9059 6.6974 24 6 1.6839 -8.2810 6.0908 25 7 1.4736 -7.4429 5.0984 26 6 2.0747 -4.6103 0.9882 27 1 2.9093 -4.2405 1.5841 28 8 2.3877 -5.9097 0.4828 29 6 1.8188 -3.6547 -0.1815 30 1 -0.4850 0.8401 0.0004 31 1 0.1002 -1.3263 1.6692 32 1 -0.6742 -2.6383 0.7464 33 1 -0.3769 -3.3667 3.0690 34 1 1.3525 -2.9475 3.0112 35 1 1.9531 -5.8033 3.2694 36 1 -1.8486 -7.6542 4.9684 37 1 -1.8743 -10.3840 6.5302 38 1 2.6970 -8.4623 6.4181 39 1 3.1739 -5.9341 -0.0796 40 1 2.7390 -3.5174 -0.7493 41 1 1.0475 -4.0696 -0.8303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090358708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:58 Heat of formation + Delta-G solvation = -105.394462 kcal Electronic energy + Delta-G solvation = -29530.526471 eV Core-core repulsion = 24889.388439 eV Total energy + Delta-G solvation = -4641.138032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.51596 -47.51893 -41.70449 -39.74261 -38.02527 -35.46428 -34.90782 -34.35196 -32.95312 -31.95925 -30.09837 -28.67854 -28.15568 -25.98712 -24.74230 -24.03470 -22.49496 -21.97448 -20.74464 -19.75947 -18.70292 -18.59461 -18.08694 -17.39827 -17.10789 -16.70365 -16.27258 -16.00606 -15.83310 -15.64720 -15.41629 -14.88458 -14.46012 -14.34004 -14.24153 -13.95833 -13.82973 -13.67841 -13.40087 -13.26145 -12.84046 -12.37029 -12.21143 -12.11435 -11.64447 -11.55026 -11.27638 -11.16181 -10.90957 -10.81178 -10.49736 -10.39034 -10.34373 -10.28719 -9.98403 -9.89630 -9.77358 -9.53507 -8.90962 -8.51479 -6.82420 -5.89237 -3.33169 -0.01715 0.19697 2.48082 2.62290 2.84177 3.31713 3.34327 3.39506 3.41102 3.43495 3.51050 3.71513 4.10237 4.31227 4.32233 4.41936 4.45404 4.52222 4.91333 5.03834 5.21684 5.27967 5.41189 5.47213 5.60801 5.70258 5.88962 6.01248 6.14927 6.20829 6.40366 6.42940 6.58679 6.69639 6.71535 7.22412 7.28897 7.52719 7.56628 7.69109 7.86210 8.09950 8.33090 9.08610 9.71079 10.26484 11.19477 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.002320 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.364426 B =12067.760351 C =12565.535805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.160 3.840 13 H 0.092 0.908 14 N -0.686 5.686 15 C 0.564 3.436 16 O -0.521 6.521 17 C 0.149 3.851 18 C -0.141 4.141 19 C 0.097 3.903 20 C 0.331 3.669 21 F -0.182 7.182 22 F -0.186 7.186 23 N -0.481 5.481 24 C 0.301 3.699 25 N -0.481 5.481 26 C 0.080 3.920 27 H 0.058 0.942 28 O -0.571 6.571 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.408 0.592 36 H 0.171 0.829 37 H 0.140 0.860 38 H 0.212 0.788 39 H 0.375 0.625 40 H 0.061 0.939 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -19.345 11.958 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.056 3.944 13 H 0.110 0.890 14 N -0.335 5.335 15 C 0.346 3.654 16 O -0.396 6.396 17 C 0.000 4.000 18 C -0.164 4.164 19 C -0.052 4.052 20 C 0.276 3.724 21 F -0.163 7.163 22 F -0.167 7.167 23 N -0.196 5.196 24 C 0.013 3.987 25 N -0.197 5.197 26 C 0.019 3.981 27 H 0.076 0.924 28 O -0.376 6.376 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.189 0.811 37 H 0.156 0.844 38 H 0.228 0.772 39 H 0.222 0.778 40 H 0.080 0.920 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.198 -19.295 12.288 22.907 hybrid contribution 0.583 1.129 -0.291 1.303 sum 1.781 -18.166 11.997 21.843 Atomic orbital electron populations 1.70033 1.05310 1.25797 1.53079 1.25072 0.95299 0.98568 1.00450 0.86270 0.79199 0.83521 0.77693 1.21350 1.21444 1.20368 1.19151 0.92734 0.84611 1.42452 0.91501 1.44050 1.35954 1.01060 1.50115 1.20837 0.88763 0.98409 0.87502 1.22630 1.01198 0.94002 1.00944 1.21181 0.98045 0.89215 0.85923 0.89016 1.45974 1.09573 1.42955 1.34975 1.17649 0.85638 0.80408 0.81716 1.90835 1.22147 1.63488 1.63110 1.21906 0.88810 0.94495 0.94824 1.22708 1.03282 0.95048 0.95352 1.22204 0.93735 0.95065 0.94205 1.20049 0.78879 0.93455 0.80025 1.93063 1.91825 1.94923 1.36453 1.93072 1.50040 1.77192 1.96410 1.68018 0.99479 1.23788 1.28302 1.25104 0.98957 0.87374 0.87263 1.68417 1.23188 1.15208 1.12937 1.22775 0.95829 0.83249 0.96226 0.92361 1.86471 1.50745 1.30165 1.70187 1.21524 0.98924 0.87370 0.92846 0.93399 0.88741 0.95655 0.91824 0.92088 0.75602 0.81124 0.84350 0.77179 0.77829 0.92028 0.95236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.19 55.49 0.62 -24.79 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 3 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.81 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.02 2.99 -172.32 -0.52 -14.53 16 10 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 11 C -0.15 -2.81 5.65 -26.62 -0.15 -2.96 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.63 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 N -0.69 -10.24 4.91 -54.52 -0.27 -10.50 16 15 C 0.56 8.59 7.79 -12.05 -0.09 8.50 16 16 O -0.52 -9.41 16.09 5.39 0.09 -9.33 16 17 C 0.15 1.84 6.79 -82.63 -0.56 1.28 16 18 C -0.14 -1.51 9.06 -38.91 -0.35 -1.86 16 19 C 0.10 0.91 6.61 -82.24 -0.54 0.37 16 20 C 0.33 2.40 5.74 36.00 0.21 2.61 16 21 F -0.18 -1.67 17.09 2.25 0.04 -1.64 16 22 F -0.19 -1.62 16.55 2.25 0.04 -1.58 16 23 N -0.48 -4.66 10.08 -10.81 -0.11 -4.77 16 24 C 0.30 2.65 12.27 -92.26 -1.13 1.52 16 25 N -0.48 -5.25 9.70 -11.14 -0.11 -5.36 16 26 C 0.08 1.32 3.14 -26.61 -0.08 1.23 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.57 -8.22 13.16 -35.23 -0.46 -8.68 16 29 C 0.12 2.38 6.14 -3.71 -0.02 2.35 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.41 5.42 7.99 -40.82 -0.33 5.10 16 36 H 0.17 1.72 7.37 -52.48 -0.39 1.33 16 37 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.38 3.81 9.08 45.56 0.41 4.23 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -32.34 356.91 -7.39 -39.73 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.93 Total: 7.39 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: -3.13 Total: 12.74 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.38 Total: -59.96 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.38 Total: -18.01 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.34 -7.39 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.666 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds