Wall clock time and date at job start Wed Apr 1 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47203 * 2 1 4 4 N 1.30133 * 121.06207 * 270.02492 * 3 2 1 5 5 S 1.69949 * 105.76454 * 179.97438 * 4 3 2 6 6 C 1.72308 * 94.57375 * 359.97438 * 5 4 3 7 7 N 1.38313 * 127.50195 * 180.02562 * 6 5 4 8 8 C 1.46957 * 110.99832 * 123.77432 * 7 6 5 9 9 C 1.53052 * 109.36478 * 176.81015 * 8 7 6 10 10 N 1.46955 * 109.36349 * 58.40570 * 9 8 7 11 11 C 1.46900 * 111.00136 * 176.81125 * 10 9 8 12 12 C 1.52998 * 109.47025 * 293.79700 * 11 10 9 13 13 C 1.53002 * 109.46800 * 179.97438 * 12 11 10 14 14 S 1.81004 * 109.46696 * 180.02562 * 13 12 11 15 15 C 1.76203 * 99.99975 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99601 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47151 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47116 * 120.00056 * 19 17 15 22 22 H 1.48501 * 109.47113 * 240.00160 * 19 17 15 23 23 C 1.46964 * 110.87832 * 300.68007 * 10 9 8 24 24 C 1.46955 * 111.00149 * 359.97438 * 7 6 5 25 25 N 1.31296 * 121.06346 * 90.00064 * 3 2 1 26 26 H 1.08999 * 109.46853 * 299.99697 * 1 2 3 27 27 H 1.08998 * 109.47298 * 59.99921 * 1 2 3 28 28 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47293 * 240.00148 * 2 1 3 30 30 H 1.08998 * 109.47298 * 120.00079 * 2 1 3 31 31 H 1.08996 * 109.49117 * 296.77965 * 8 7 6 32 32 H 1.09006 * 109.48455 * 56.84828 * 8 7 6 33 33 H 1.08997 * 109.49061 * 298.43600 * 9 8 7 34 34 H 1.08991 * 109.48959 * 178.37006 * 9 8 7 35 35 H 1.08999 * 109.47068 * 53.80249 * 11 10 9 36 36 H 1.09005 * 109.47310 * 173.79642 * 11 10 9 37 37 H 1.08991 * 109.47304 * 300.00155 * 12 11 10 38 38 H 1.08995 * 109.46839 * 60.00325 * 12 11 10 39 39 H 1.08999 * 109.47156 * 299.99560 * 13 12 11 40 40 H 1.08995 * 109.47092 * 60.00562 * 13 12 11 41 41 H 0.97000 * 119.99903 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.48845 * 299.34744 * 23 10 9 43 43 H 1.09001 * 109.48762 * 179.29252 * 23 10 9 44 44 H 1.09005 * 109.48708 * 303.15435 * 24 7 6 45 45 H 1.08995 * 109.49009 * 63.19463 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2557 2.0540 -1.1147 5 16 2.8016 3.5997 -0.6663 6 6 2.6945 3.2975 1.0266 7 7 3.0007 4.1666 2.0581 8 6 1.8524 4.3405 2.9586 9 6 2.2557 5.2435 4.1267 10 7 2.7135 6.5391 3.6055 11 6 3.0387 7.4621 4.7010 12 6 1.7623 7.8127 5.4684 13 6 2.1012 8.7736 6.6098 14 16 0.5913 9.1878 7.5180 15 6 1.2555 10.2726 8.7373 16 1 2.3135 10.4896 8.7482 17 6 0.4190 10.8492 9.6829 18 7 -0.8704 10.5851 9.6693 19 14 1.1231 11.9999 10.9751 20 1 2.5886 12.1317 10.7747 21 1 0.4848 13.3348 10.8497 22 1 0.8555 11.4483 12.3277 23 6 3.8617 6.3652 2.7049 24 6 3.4585 5.4621 1.5370 25 7 2.2582 2.0595 1.1247 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.0281 4.7989 2.4124 32 1 1.5400 3.3688 3.3413 33 1 3.0619 4.7725 4.6891 34 1 1.3974 5.3974 4.7806 35 1 3.7502 6.9876 5.3768 36 1 3.4779 8.3718 4.2915 37 1 1.0509 8.2872 4.7926 38 1 1.3232 6.9031 5.8780 39 1 2.8124 8.2986 7.2855 40 1 2.5405 9.6833 6.2006 41 1 -1.4550 10.9877 10.3304 42 1 4.6861 5.9069 3.2511 43 1 4.1743 7.3368 2.3224 44 1 4.3170 5.3081 0.8830 45 1 2.6526 5.9330 0.9742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:08 Heat of formation + Delta-G solvation = 54.049769 kcal Electronic energy + Delta-G solvation = -24184.118197 eV Core-core repulsion = 20682.320538 eV Total energy + Delta-G solvation = -3501.797659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93370 -39.77362 -36.79050 -33.88559 -32.81402 -32.43786 -31.53893 -31.50319 -28.19333 -25.89550 -25.55271 -24.47434 -24.28049 -22.69716 -21.05905 -20.38964 -19.90627 -19.21519 -17.63341 -17.42115 -16.25087 -15.67229 -15.48753 -15.27857 -15.22926 -14.91053 -14.82332 -14.61230 -14.40822 -14.16008 -13.86491 -13.06588 -13.00663 -12.81410 -12.54739 -12.33011 -12.12903 -11.96394 -11.77894 -11.72677 -11.65087 -11.48098 -11.42767 -11.24441 -11.09337 -11.00360 -10.80137 -10.63317 -10.35220 -10.08873 -9.76154 -9.56185 -9.08540 -8.90003 -8.57497 -8.32183 -6.54911 -6.24872 -3.95131 0.09250 0.66628 1.33845 2.18416 2.58322 3.19415 3.19722 3.28304 3.44159 3.71260 3.79902 4.20512 4.25526 4.50042 4.57288 4.64108 4.75939 4.80578 4.85111 4.90559 5.01724 5.11272 5.16555 5.22218 5.24022 5.30167 5.39888 5.42917 5.43480 5.46735 5.55348 5.61212 5.62256 5.65712 5.79536 5.85379 5.96526 5.99248 6.11425 6.28153 6.51957 6.66728 6.80651 6.86752 7.28553 7.58967 8.34893 9.21725 10.83353 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.026709 B = 0.001704 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.078684 B =16431.898597 C =17141.443396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C 0.292 3.708 4 N -0.487 5.487 5 S 0.181 5.819 6 C 0.278 3.722 7 N -0.431 5.431 8 C 0.067 3.933 9 C 0.050 3.950 10 N -0.541 5.541 11 C 0.061 3.939 12 C -0.094 4.094 13 C -0.113 4.113 14 S -0.132 6.132 15 C -0.516 4.516 16 H 0.073 0.927 17 C 0.070 3.930 18 N -0.869 5.869 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.059 3.941 24 C 0.045 3.955 25 N -0.537 5.537 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.267 0.733 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -17.289 -20.554 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C 0.001 3.999 4 N -0.318 5.318 5 S 0.319 5.681 6 C -0.100 4.100 7 N -0.151 5.151 8 C -0.060 4.060 9 C -0.078 4.078 10 N -0.266 5.266 11 C -0.067 4.067 12 C -0.133 4.133 13 C -0.263 4.263 14 S 0.096 5.904 15 C -0.664 4.664 16 H 0.091 0.909 17 C -0.138 4.138 18 N -0.505 5.505 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.070 4.070 24 C -0.082 4.082 25 N -0.265 5.265 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.873 -17.309 -21.814 28.682 hybrid contribution 1.808 0.661 1.974 2.758 sum 8.682 -16.647 -19.839 27.315 Atomic orbital electron populations 1.21716 0.93229 1.02764 1.02674 1.20224 0.96897 0.86250 1.04512 1.23421 0.94920 0.99337 0.82183 1.77525 1.26297 1.02108 1.25891 1.85098 1.62674 1.18988 1.01361 1.27049 0.93866 0.93312 0.95811 1.58199 1.33053 1.11159 1.12701 1.22503 0.88860 1.01651 0.93021 1.22320 1.01836 0.88307 0.95339 1.62206 1.33849 1.11134 1.19383 1.22196 0.97852 0.95538 0.91147 1.21286 0.96505 0.99381 0.96106 1.23229 1.03270 1.00479 0.99272 1.84636 1.09104 1.60974 1.35685 1.22733 0.96464 1.31407 1.15835 0.90920 1.25016 0.94728 0.96606 0.97470 1.70028 1.03149 1.42380 1.34940 0.86118 0.79083 0.79915 0.80434 1.19622 1.20559 1.20570 1.22127 0.92535 0.99219 0.93114 1.22680 1.01738 0.85757 0.98069 1.67358 1.23869 1.05527 1.29759 0.91984 0.92316 0.91114 0.89077 0.88686 0.91679 0.88062 0.93255 0.88071 0.94492 0.90461 0.90680 0.91633 0.92317 0.92098 0.92350 0.93307 0.88746 0.88759 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.04 -0.27 6.47 -27.88 -0.18 -0.45 16 3 C 0.29 3.08 6.82 -159.03 -1.08 1.99 16 4 N -0.49 -5.55 12.15 29.55 0.36 -5.19 16 5 S 0.18 1.77 22.19 -107.50 -2.38 -0.62 16 6 C 0.28 2.89 7.02 -86.36 -0.61 2.29 16 7 N -0.43 -4.06 4.77 -174.38 -0.83 -4.90 16 8 C 0.07 0.62 5.53 -3.77 -0.02 0.60 16 9 C 0.05 0.49 5.41 -3.77 -0.02 0.47 16 10 N -0.54 -5.52 4.71 -234.47 -1.10 -6.63 16 11 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16 12 C -0.09 -1.41 5.15 -26.73 -0.14 -1.55 16 13 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 14 S -0.13 -3.38 21.44 -107.50 -2.30 -5.69 16 15 C -0.52 -14.62 9.50 30.94 0.29 -14.32 16 16 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 17 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 18 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 19 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.06 0.48 5.61 -3.77 -0.02 0.45 16 24 C 0.04 0.34 4.72 -3.77 -0.02 0.33 16 25 N -0.54 -6.09 10.44 -14.57 -0.15 -6.24 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.95 8.00 -51.93 -0.42 0.53 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.04 6.34 -51.93 -0.33 0.71 16 35 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.98 6.49 -51.93 -0.34 0.65 16 39 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 44 H 0.09 0.59 7.74 -51.93 -0.40 0.19 16 45 H 0.07 0.55 8.02 -51.93 -0.42 0.14 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -32.25 388.51 -13.54 -45.79 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.35 Total: -3.55 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.33 Total: -10.12 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.00 Total: -47.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -4.69 Total: -6.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.25 -13.54 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.841 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds