Wall clock time and date at job start Wed Apr 1 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47203 * 2 1 4 4 N 1.30133 * 121.06207 * 270.02492 * 3 2 1 5 5 S 1.69949 * 105.76454 * 179.97438 * 4 3 2 6 6 C 1.72308 * 94.57375 * 359.97438 * 5 4 3 7 7 N 1.38313 * 127.50195 * 180.02562 * 6 5 4 8 8 C 1.46957 * 110.99832 * 123.77432 * 7 6 5 9 9 C 1.53052 * 109.36478 * 176.81015 * 8 7 6 10 10 N 1.46955 * 109.36349 * 58.40570 * 9 8 7 11 11 C 1.46900 * 111.00136 * 176.81125 * 10 9 8 12 12 C 1.52998 * 109.47025 * 293.79700 * 11 10 9 13 13 C 1.53002 * 109.46800 * 179.97438 * 12 11 10 14 14 S 1.81004 * 109.46696 * 180.02562 * 13 12 11 15 15 C 1.76203 * 99.99975 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99601 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47151 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47116 * 120.00056 * 19 17 15 22 22 H 1.48501 * 109.47113 * 240.00160 * 19 17 15 23 23 C 1.46964 * 110.87832 * 300.68007 * 10 9 8 24 24 C 1.46955 * 111.00149 * 359.97438 * 7 6 5 25 25 N 1.31296 * 121.06346 * 90.00064 * 3 2 1 26 26 H 1.08999 * 109.46853 * 299.99697 * 1 2 3 27 27 H 1.08998 * 109.47298 * 59.99921 * 1 2 3 28 28 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47293 * 240.00148 * 2 1 3 30 30 H 1.08998 * 109.47298 * 120.00079 * 2 1 3 31 31 H 1.08996 * 109.49117 * 296.77965 * 8 7 6 32 32 H 1.09006 * 109.48455 * 56.84828 * 8 7 6 33 33 H 1.08997 * 109.49061 * 298.43600 * 9 8 7 34 34 H 1.08991 * 109.48959 * 178.37006 * 9 8 7 35 35 H 1.08999 * 109.47068 * 53.80249 * 11 10 9 36 36 H 1.09005 * 109.47310 * 173.79642 * 11 10 9 37 37 H 1.08991 * 109.47304 * 300.00155 * 12 11 10 38 38 H 1.08995 * 109.46839 * 60.00325 * 12 11 10 39 39 H 1.08999 * 109.47156 * 299.99560 * 13 12 11 40 40 H 1.08995 * 109.47092 * 60.00562 * 13 12 11 41 41 H 0.97000 * 119.99903 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.48845 * 299.34744 * 23 10 9 43 43 H 1.09001 * 109.48762 * 179.29252 * 23 10 9 44 44 H 1.09005 * 109.48708 * 303.15435 * 24 7 6 45 45 H 1.08995 * 109.49009 * 63.19463 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2557 2.0540 -1.1147 5 16 2.8016 3.5997 -0.6663 6 6 2.6945 3.2975 1.0266 7 7 3.0007 4.1666 2.0581 8 6 1.8524 4.3405 2.9586 9 6 2.2557 5.2435 4.1267 10 7 2.7135 6.5391 3.6055 11 6 3.0387 7.4621 4.7010 12 6 1.7623 7.8127 5.4684 13 6 2.1012 8.7736 6.6098 14 16 0.5913 9.1878 7.5180 15 6 1.2555 10.2726 8.7373 16 1 2.3135 10.4896 8.7482 17 6 0.4190 10.8492 9.6829 18 7 -0.8704 10.5851 9.6693 19 14 1.1231 11.9999 10.9751 20 1 2.5886 12.1317 10.7747 21 1 0.4848 13.3348 10.8497 22 1 0.8555 11.4483 12.3277 23 6 3.8617 6.3652 2.7049 24 6 3.4585 5.4621 1.5370 25 7 2.2582 2.0595 1.1247 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.0281 4.7989 2.4124 32 1 1.5400 3.3688 3.3413 33 1 3.0619 4.7725 4.6891 34 1 1.3974 5.3974 4.7806 35 1 3.7502 6.9876 5.3768 36 1 3.4779 8.3718 4.2915 37 1 1.0509 8.2872 4.7926 38 1 1.3232 6.9031 5.8780 39 1 2.8124 8.2986 7.2855 40 1 2.5405 9.6833 6.2006 41 1 -1.4550 10.9877 10.3304 42 1 4.6861 5.9069 3.2511 43 1 4.1743 7.3368 2.3224 44 1 4.3170 5.3081 0.8830 45 1 2.6526 5.9330 0.9742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:06 Heat of formation + Delta-G solvation = 33.713363 kcal Electronic energy + Delta-G solvation = -24185.000050 eV Core-core repulsion = 20682.320538 eV Total energy + Delta-G solvation = -3502.679512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.124 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.69170 -40.53298 -37.66028 -34.72868 -34.57146 -33.72969 -32.32158 -32.24825 -29.14123 -27.78558 -26.52244 -25.33936 -25.18723 -23.41048 -22.19501 -21.17802 -20.64465 -19.96764 -19.53370 -18.32416 -17.03174 -16.88856 -16.67404 -16.46678 -16.03904 -15.93145 -15.85962 -15.67759 -15.35579 -15.03560 -14.94205 -14.60245 -13.77490 -13.67447 -13.48454 -13.34578 -13.17253 -13.09106 -12.92267 -12.83738 -12.65354 -12.54723 -12.45530 -12.34186 -12.21525 -12.07635 -12.03146 -11.78651 -11.55892 -11.30500 -11.14167 -10.88599 -10.51161 -10.28567 -9.64965 -9.38188 -8.64397 -8.36636 -6.12106 -0.68746 -0.10255 0.58158 1.32512 1.38736 1.41763 1.50080 1.76810 1.87593 2.29373 2.78711 2.97805 3.10516 3.34158 3.57023 3.78663 3.87264 4.01862 4.06872 4.11620 4.16558 4.20479 4.29416 4.33303 4.35720 4.42454 4.51008 4.53930 4.60605 4.69977 4.79387 4.80683 4.84004 4.87981 4.94236 4.96182 5.01510 5.21083 5.27075 5.27404 5.33757 5.37931 5.41225 5.95868 6.01893 6.19295 6.52171 7.06088 8.72876 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.026709 B = 0.001704 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.078684 B =16431.898597 C =17141.443396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C 0.287 3.713 4 N -0.514 5.514 5 S 0.202 5.798 6 C 0.273 3.727 7 N -0.434 5.434 8 C 0.074 3.926 9 C 0.054 3.946 10 N -0.547 5.547 11 C 0.074 3.926 12 C -0.083 4.083 13 C -0.088 4.088 14 S -0.200 6.200 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.014 3.986 18 N -0.908 5.908 19 Si 0.993 3.007 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.060 3.940 24 C 0.044 3.956 25 N -0.557 5.557 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.271 0.729 42 H 0.050 0.950 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.612 -17.276 -21.059 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.003 4.003 4 N -0.346 5.346 5 S 0.339 5.661 6 C -0.105 4.105 7 N -0.155 5.155 8 C -0.053 4.053 9 C -0.074 4.074 10 N -0.272 5.272 11 C -0.056 4.056 12 C -0.122 4.122 13 C -0.237 4.237 14 S 0.029 5.971 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.191 4.191 18 N -0.544 5.544 19 Si 0.816 3.184 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.068 4.068 24 C -0.082 4.082 25 N -0.286 5.286 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.476 -17.297 -22.332 29.491 hybrid contribution 1.340 0.609 2.052 2.525 sum 9.816 -16.688 -20.280 28.038 Atomic orbital electron populations 1.21679 0.92565 1.03885 1.01661 1.20390 0.97353 0.84749 1.05450 1.23914 0.94294 1.00344 0.81782 1.77481 1.27376 1.03075 1.26650 1.84914 1.62401 1.18220 1.00530 1.27191 0.93632 0.93354 0.96356 1.58233 1.32773 1.11848 1.12622 1.22387 0.88823 1.01289 0.92810 1.22259 1.01486 0.88307 0.95393 1.62150 1.35084 1.10997 1.18966 1.21978 0.95646 0.96518 0.91420 1.21166 0.98221 0.98025 0.94752 1.23162 0.99473 1.01547 0.99547 1.84650 1.14540 1.61102 1.36799 1.23085 0.96655 1.32012 1.16720 0.90886 1.26060 0.95018 0.98229 0.99751 1.70160 1.04620 1.43617 1.36019 0.84979 0.78664 0.77528 0.77279 1.18599 1.19747 1.19776 1.22206 0.91589 1.00301 0.92657 1.22785 1.02472 0.84819 0.98149 1.67412 1.24650 1.06126 1.30413 0.93059 0.93172 0.88927 0.87954 0.87855 0.91926 0.88403 0.93389 0.88814 0.94092 0.89313 0.91463 0.91860 0.92068 0.91724 0.92019 0.93146 0.86943 0.87067 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.04 -0.51 6.47 29.85 0.19 -0.32 16 3 C 0.29 5.87 6.82 139.39 0.95 6.82 16 4 N -0.51 -11.39 12.15 -60.44 -0.73 -12.12 16 5 S 0.20 3.72 22.19 -56.49 -1.25 2.47 16 6 C 0.27 5.41 7.02 178.86 1.26 6.67 16 7 N -0.43 -7.61 4.77 -705.61 -3.37 -10.98 16 8 C 0.07 1.32 5.53 86.31 0.48 1.79 16 9 C 0.05 1.00 5.41 86.31 0.47 1.47 16 10 N -0.55 -10.13 4.71 -895.73 -4.22 -14.35 16 11 C 0.07 1.56 4.96 86.30 0.43 1.99 16 12 C -0.08 -2.40 5.15 30.59 0.16 -2.25 16 13 C -0.09 -3.32 5.67 71.98 0.41 -2.92 16 14 S -0.20 -10.41 21.44 -56.49 -1.21 -11.62 16 15 C -0.54 -30.65 9.50 67.95 0.65 -30.00 16 16 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 17 C 0.01 0.80 5.49 84.86 0.47 1.27 16 18 N -0.91 -54.48 13.22 21.65 0.29 -54.20 16 19 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C 0.06 0.83 5.61 86.31 0.48 1.31 16 24 C 0.04 0.59 4.72 86.31 0.41 0.99 16 25 N -0.56 -12.30 10.44 -200.01 -2.09 -14.39 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.80 8.00 -2.38 -0.02 1.78 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.88 6.34 -2.39 -0.02 1.86 16 35 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 36 H 0.09 1.72 8.03 -2.38 -0.02 1.70 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.87 6.49 -2.39 -0.02 1.86 16 39 H 0.06 2.28 8.14 -2.40 -0.02 2.26 16 40 H 0.06 2.39 8.14 -2.40 -0.02 2.37 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 1.17 8.07 -2.39 -0.02 1.15 16 44 H 0.11 1.11 7.74 -2.38 -0.02 1.09 16 45 H 0.08 0.99 8.02 -2.39 -0.02 0.97 16 Total: -1.00 -69.79 388.51 -2.54 -72.32 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.97 Total: 11.42 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 7.05 Total: -14.11 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -10.12 Total: -106.03 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -2.46 Total: -9.15 kcal Total: -69.79 -2.54 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.037 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds