Wall clock time and date at job start Wed Apr 1 2020 00:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46787 * 192.50325 * 3 2 1 5 5 C 1.36863 * 119.99806 * 263.95486 * 4 3 2 6 6 H 1.08007 * 119.99748 * 145.82259 * 5 4 3 7 7 C 1.39038 * 120.00535 * 325.81732 * 5 4 3 8 8 N 1.31372 * 120.00287 * 155.92187 * 7 5 4 9 9 Si 1.86804 * 120.00102 * 335.92767 * 7 5 4 10 10 H 1.48498 * 109.47062 * 93.74220 * 9 7 5 11 11 H 1.48495 * 109.47337 * 213.74753 * 9 7 5 12 12 H 1.48510 * 109.46679 * 333.74752 * 9 7 5 13 13 C 1.34778 * 120.00155 * 83.96149 * 4 3 2 14 14 O 1.21599 * 120.00448 * 175.85447 * 13 4 3 15 15 C 1.47701 * 119.99501 * 355.84696 * 13 4 3 16 16 N 1.34604 * 126.02946 * 178.53175 * 15 13 4 17 17 C 1.30868 * 107.28640 * 179.73809 * 16 15 13 18 18 C 1.50704 * 126.19519 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47053 * 94.62765 * 18 17 16 20 20 N 1.34878 * 107.61409 * 0.02562 * 17 16 15 21 21 C 1.40167 * 125.76884 * 180.02562 * 20 17 16 22 22 C 1.38833 * 120.07540 * 307.94913 * 21 20 17 23 23 C 1.38118 * 119.95361 * 179.74748 * 22 21 20 24 24 C 1.38304 * 120.11667 * 0.54889 * 23 22 21 25 25 C 1.38242 * 120.15735 * 359.70406 * 24 23 22 26 26 C 1.38338 * 120.04387 * 0.02562 * 25 24 23 27 27 F 1.35103 * 120.06088 * 179.97438 * 26 25 24 28 28 N 1.28855 * 108.46888 * 359.97438 * 20 17 16 29 29 H 4.40634 * 5.51455 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46678 * 72.50786 * 3 2 1 31 31 H 1.08999 * 109.47235 * 312.50509 * 3 2 1 32 32 H 0.97001 * 119.99632 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47206 * 214.63672 * 18 17 16 34 34 H 1.09002 * 109.46562 * 334.63100 * 18 17 16 35 35 H 1.09004 * 109.46646 * 60.00695 * 19 18 17 36 36 H 1.09000 * 109.47080 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47354 * 300.00134 * 19 18 17 38 38 H 1.07998 * 120.02316 * 0.02562 * 22 21 20 39 39 H 1.07991 * 119.94276 * 180.27687 * 23 22 21 40 40 H 1.08000 * 119.92150 * 179.72525 * 24 23 22 41 41 H 1.08007 * 119.97785 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3493 0.2990 5 6 3.4791 2.1939 -0.7211 6 1 3.3073 3.2559 -0.6245 7 6 4.0512 1.6850 -1.8816 8 7 3.9550 2.3528 -3.0088 9 14 4.9564 0.0515 -1.8381 10 1 4.0229 -1.0418 -2.2102 11 1 6.0868 0.0862 -2.8004 12 1 5.4790 -0.1884 -0.4689 13 6 3.2424 1.7584 1.5786 14 8 3.7176 2.8490 1.8301 15 6 2.7840 0.8818 2.6755 16 7 2.8599 1.1546 3.9914 17 6 2.3460 0.1347 4.6303 18 6 2.2174 -0.0060 6.1252 19 6 0.8284 0.4618 6.5640 20 7 1.9531 -0.7684 3.7087 21 6 1.3506 -2.0049 3.9781 22 6 1.9420 -2.8869 4.8723 23 6 1.3434 -4.1025 5.1399 24 6 0.1615 -4.4477 4.5099 25 6 -0.4288 -3.5752 3.6147 26 6 0.1622 -2.3536 3.3460 27 9 -0.4141 -1.5009 2.4707 28 7 2.2243 -0.3018 2.5386 29 1 -1.0502 -0.0004 0.0001 30 1 3.0095 -0.3081 -0.9802 31 1 3.0097 -0.6935 0.7576 32 1 4.3538 1.9975 -3.8185 33 1 2.3543 -1.0505 6.4050 34 1 2.9774 0.6036 6.6141 35 1 0.0685 -0.1478 6.0750 36 1 0.7356 0.3605 7.6453 37 1 0.6916 1.5064 6.2842 38 1 2.8672 -2.6208 5.3618 39 1 1.8012 -4.7866 5.8389 40 1 -0.3016 -5.4009 4.7182 41 1 -1.3520 -3.8475 3.1247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281039915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:04 Heat of formation + Delta-G solvation = 134.985635 kcal Electronic energy + Delta-G solvation = -30206.687627 eV Core-core repulsion = 26006.742483 eV Total energy + Delta-G solvation = -4199.945144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.09485 -43.36326 -39.49530 -38.57453 -35.37975 -34.61367 -34.37966 -32.61025 -31.53106 -31.23983 -30.64846 -29.50535 -26.66688 -25.90353 -24.84248 -23.59488 -23.34956 -22.25719 -20.84349 -19.38393 -18.44147 -18.35340 -17.57222 -17.13800 -16.73294 -16.23053 -15.93170 -15.67345 -15.62423 -15.35890 -14.88769 -14.59904 -14.26379 -14.19850 -13.78715 -13.53938 -13.20089 -12.97703 -12.85566 -12.73075 -12.54357 -12.49620 -12.30599 -12.00427 -11.84219 -11.60519 -11.18185 -10.91674 -10.74422 -10.45533 -10.18612 -10.04841 -9.68617 -9.64173 -9.37090 -9.24416 -9.21063 -8.83058 -8.72206 -7.96224 -6.49667 -3.99915 0.36608 0.63571 1.74862 2.21244 2.49454 2.99616 3.01258 3.18556 3.25281 3.37163 3.62602 3.74375 3.88424 4.08459 4.16604 4.19890 4.34575 4.37360 4.50659 4.69074 4.74845 4.88600 4.97301 4.99737 5.05398 5.21391 5.24859 5.41031 5.46818 5.51443 5.54074 5.61615 5.75080 5.79846 5.94929 5.98478 6.05572 6.21265 6.39426 6.61020 6.65865 6.83187 7.42348 8.11916 8.25055 8.38495 8.49227 8.84719 9.18708 9.65254 10.61047 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.004397 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.442969 B = 6366.801677 C = 7265.795888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.152 4.152 3 C 0.191 3.809 4 N -0.434 5.434 5 C -0.312 4.312 6 H 0.114 0.886 7 C 0.066 3.934 8 N -0.845 5.845 9 Si 0.865 3.135 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.259 1.259 13 C 0.544 3.456 14 O -0.533 6.533 15 C 0.183 3.817 16 N -0.453 5.453 17 C 0.214 3.786 18 C -0.041 4.041 19 C -0.147 4.147 20 N -0.268 5.268 21 C 0.097 3.903 22 C -0.084 4.084 23 C -0.117 4.117 24 C -0.080 4.080 25 C -0.145 4.145 26 C 0.128 3.872 27 F -0.111 7.111 28 N -0.278 5.278 29 H 0.207 0.793 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.278 0.722 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 -18.822 18.459 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.153 4.153 3 C 0.068 3.932 4 N -0.154 5.154 5 C -0.440 4.440 6 H 0.132 0.868 7 C -0.142 4.142 8 N -0.480 5.480 9 Si 0.692 3.308 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.183 1.183 13 C 0.329 3.671 14 O -0.410 6.410 15 C -0.096 4.096 16 N -0.176 5.176 17 C -0.061 4.061 18 C -0.080 4.080 19 C -0.206 4.206 20 N -0.058 5.058 21 C 0.005 3.995 22 C -0.104 4.104 23 C -0.136 4.136 24 C -0.098 4.098 25 C -0.164 4.164 26 C 0.106 3.894 27 F -0.089 7.089 28 N -0.113 5.113 29 H 0.224 0.776 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.487 -18.053 17.812 26.743 hybrid contribution 0.014 -0.869 -0.312 0.923 sum -8.472 -18.922 17.499 27.130 Atomic orbital electron populations 1.24430 0.95350 1.01023 1.03317 1.23264 0.94340 0.99508 0.98192 1.19096 0.84860 0.86976 1.02267 1.43463 1.54980 1.12680 1.04292 1.19108 1.40319 0.92724 0.91801 0.86845 1.25317 0.96006 0.98244 0.94621 1.69744 1.39727 1.39729 0.98820 0.87158 0.80493 0.83590 0.79598 1.19673 1.20608 1.18268 1.16316 0.83893 0.86459 0.80385 1.90698 1.47198 1.21263 1.81881 1.24574 1.00798 0.91397 0.92858 1.71319 1.19640 1.23006 1.03658 1.25100 0.98703 0.86468 0.95794 1.20159 1.00478 1.03311 0.84070 1.21735 0.94791 1.02536 1.01493 1.44274 1.43283 1.13725 1.04540 1.17544 0.93646 0.85682 1.02637 1.21074 0.99778 0.92607 0.96959 1.21086 0.95963 0.95812 1.00733 1.21192 0.94959 0.99286 0.94385 1.21194 1.02096 0.92269 1.00855 1.17709 0.91057 0.89671 0.90948 1.91656 1.82971 1.68855 1.65463 1.74905 1.18789 1.13394 1.04236 0.77614 0.88920 0.88158 0.91178 0.89664 0.87753 0.92859 0.91044 0.91508 0.83965 0.84024 0.84115 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.42 18.02 29.55 0.53 -3.89 16 2 C -0.15 -3.41 12.09 -37.12 -0.45 -3.86 16 3 C 0.19 4.53 4.14 -6.83 -0.03 4.50 16 4 N -0.43 -11.74 2.21 -119.07 -0.26 -12.00 16 5 C -0.31 -9.25 9.39 -15.01 -0.14 -9.39 16 6 H 0.11 3.70 7.88 -52.48 -0.41 3.28 16 7 C 0.07 1.87 5.26 -17.45 -0.09 1.78 16 8 N -0.85 -24.49 13.95 55.50 0.77 -23.71 16 9 Si 0.87 20.76 25.08 -169.99 -4.26 16.50 16 10 H -0.27 -6.03 6.57 56.52 0.37 -5.66 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.54 14.87 7.57 -12.39 -0.09 14.78 16 14 O -0.53 -16.15 16.95 5.28 0.09 -16.06 16 15 C 0.18 4.31 7.58 -156.26 -1.18 3.12 16 16 N -0.45 -9.63 11.41 -8.49 -0.10 -9.73 16 17 C 0.21 3.45 7.07 -155.26 -1.10 2.36 16 18 C -0.04 -0.42 6.15 -27.88 -0.17 -0.59 16 19 C -0.15 -1.36 9.89 37.16 0.37 -0.99 16 20 N -0.27 -4.43 3.28 -7.95 -0.03 -4.46 16 21 C 0.10 1.21 5.93 -83.53 -0.50 0.71 16 22 C -0.08 -0.71 8.44 -39.41 -0.33 -1.04 16 23 C -0.12 -0.66 10.04 -39.60 -0.40 -1.05 16 24 C -0.08 -0.44 10.04 -39.56 -0.40 -0.84 16 25 C -0.14 -1.16 10.02 -39.54 -0.40 -1.56 16 26 C 0.13 1.55 7.27 -39.25 -0.29 1.27 16 27 F -0.11 -1.70 15.49 2.25 0.03 -1.67 16 28 N -0.28 -5.70 7.12 32.07 0.23 -5.48 16 29 H 0.21 3.25 7.80 -54.08 -0.42 2.82 16 30 H 0.09 2.22 3.22 -51.93 -0.17 2.05 16 31 H 0.10 2.25 5.77 -51.93 -0.30 1.95 16 32 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 0.62 5.68 -51.93 -0.30 0.32 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.14 1.00 7.05 -52.49 -0.37 0.63 16 39 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -37.22 357.63 -6.89 -44.10 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.09 Total: 1.80 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -4.66 Total: 5.31 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.62 Total: -55.37 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.26 Total: 16.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.22 -6.89 -44.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281039915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.088 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds