Wall clock time and date at job start Wed Apr 1 2020 00:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46737 * 226.87422 * 3 2 1 5 5 N 1.46494 * 109.47037 * 106.87361 * 3 2 1 6 6 C 1.34780 * 120.00332 * 84.99630 * 5 3 2 7 7 O 1.21596 * 119.99507 * 0.02562 * 6 5 3 8 8 N 1.34768 * 120.00292 * 180.02562 * 6 5 3 9 9 C 1.40201 * 120.00142 * 180.02562 * 8 6 5 10 10 C 1.40396 * 125.97176 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86896 * 179.97438 * 10 9 8 12 12 N 1.34962 * 107.85356 * 0.22585 * 11 10 9 13 13 C 1.46501 * 125.97082 * 179.76577 * 12 11 10 14 14 C 1.50703 * 109.46706 * 125.00181 * 13 12 11 15 15 H 1.07992 * 120.00189 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00259 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46837 * 89.99815 * 18 16 14 20 20 H 1.48493 * 109.47140 * 209.99651 * 18 16 14 21 21 H 1.48494 * 109.46790 * 329.99908 * 18 16 14 22 22 N 1.31202 * 125.97171 * 179.97438 * 9 8 6 23 23 C 1.50697 * 109.46957 * 346.87080 * 3 2 1 24 24 C 1.38243 * 119.97418 * 79.73294 * 23 3 2 25 25 C 1.38200 * 120.02558 * 179.72420 * 24 23 3 26 26 C 1.38454 * 119.97360 * 0.51892 * 25 24 23 27 27 F 1.35100 * 120.02850 * 179.73010 * 26 25 24 28 28 C 1.38457 * 119.94897 * 359.75018 * 26 25 24 29 29 C 1.38194 * 119.97649 * 0.02562 * 28 26 25 30 30 H 4.18743 * 15.03934 * 0.02562 * 4 2 1 31 31 H 0.96998 * 120.00015 * 264.99656 * 5 3 2 32 32 H 0.96998 * 120.00056 * 359.97438 * 8 6 5 33 33 H 1.08003 * 126.06768 * 359.93842 * 10 9 8 34 34 H 1.08002 * 126.06857 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47836 * 245.00121 * 13 12 11 36 36 H 1.08997 * 109.47518 * 5.00660 * 13 12 11 37 37 H 0.96996 * 120.00319 * 180.02562 * 17 16 14 38 38 H 1.08004 * 119.98979 * 359.97376 * 24 23 3 39 39 H 1.08002 * 120.01188 * 180.29716 * 25 24 23 40 40 H 1.08006 * 120.01272 * 179.97438 * 28 26 25 41 41 H 1.08003 * 119.99350 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.7033 0.7500 5 7 3.1341 0.4018 -1.3217 6 6 3.2622 1.7088 -1.6247 7 8 2.9730 2.5550 -0.8008 8 7 3.7108 2.0778 -2.8408 9 6 3.8445 3.4374 -3.1558 10 6 3.5486 4.5141 -2.3048 11 6 3.8103 5.6583 -2.9767 12 7 4.2502 5.3237 -4.2080 13 6 4.6427 6.2589 -5.2651 14 6 6.0419 5.9390 -5.7246 15 1 6.5842 5.1208 -5.2746 16 6 6.6291 6.6905 -6.7204 17 7 7.8500 6.4111 -7.1218 18 14 5.6907 8.1055 -7.4994 19 1 5.9591 9.3540 -6.7416 20 1 6.1316 8.2764 -8.9070 21 1 4.2357 7.8107 -7.4687 22 7 4.2681 3.9259 -4.2975 23 6 3.1489 -1.3828 0.3227 24 6 3.1783 -2.3539 -0.6608 25 6 3.6446 -3.6213 -0.3674 26 6 4.0724 -3.9214 0.9148 27 9 4.5234 -5.1616 1.2041 28 6 4.0373 -2.9496 1.9003 29 6 3.5749 -1.6816 1.6036 30 1 -1.0501 -0.0009 -0.0002 31 1 3.3652 -0.2733 -1.9788 32 1 3.9418 1.4028 -3.4979 33 1 3.1772 4.4416 -1.2932 34 1 3.6851 6.6615 -2.5969 35 1 3.9545 6.1673 -6.1054 36 1 4.6111 7.2777 -4.8791 37 1 8.2633 6.9399 -7.8220 38 1 2.8405 -2.1208 -1.6598 39 1 3.6720 -4.3784 -1.1371 40 1 4.3703 -3.1827 2.9010 41 1 3.5470 -0.9234 2.3723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491821056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:42 Heat of formation + Delta-G solvation = 107.120214 kcal Electronic energy + Delta-G solvation = -27183.735628 eV Core-core repulsion = 22982.582149 eV Total energy + Delta-G solvation = -4201.153479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 7.18 seconds Orbital eigenvalues (eV) -49.32929 -40.93135 -40.21259 -39.26300 -36.08316 -34.72384 -33.39255 -32.69900 -31.69191 -31.43157 -30.84273 -29.38639 -27.33709 -26.46312 -23.76749 -22.87677 -22.28112 -21.76722 -20.48443 -19.94710 -18.73716 -18.49244 -17.97544 -17.21060 -16.93544 -16.63386 -16.11652 -16.02799 -15.69357 -15.55781 -14.95457 -14.78782 -14.65495 -14.30793 -14.06756 -13.96520 -13.64639 -13.39768 -13.06992 -12.75259 -12.57896 -12.52150 -12.32034 -12.14601 -11.54867 -11.19515 -10.90281 -10.77634 -10.67230 -10.52487 -10.15015 -10.00774 -9.80233 -9.66277 -9.61991 -9.51368 -9.15128 -8.76494 -8.18561 -7.49660 -6.23348 -4.25516 0.53395 0.70878 1.98544 2.53826 2.57153 2.76298 2.98814 3.07707 3.15509 3.22612 3.23652 3.51679 3.75149 3.76204 4.01734 4.18698 4.22903 4.25341 4.29891 4.41593 4.70338 4.78413 5.04392 5.10689 5.36247 5.38902 5.42506 5.60542 5.63768 5.67640 5.69039 5.83417 6.06229 6.16906 6.31228 6.33862 6.45532 6.54807 6.70174 6.88244 7.27472 7.34479 7.40546 7.79255 7.83871 8.33967 8.47161 8.57985 8.86686 9.31669 10.89349 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.001918 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.314432 B =14592.344057 C =15515.332531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.200 4.200 3 C 0.324 3.676 4 H 0.123 0.877 5 N -0.736 5.736 6 C 0.718 3.282 7 O -0.561 6.561 8 N -0.641 5.641 9 C 0.278 3.722 10 C -0.282 4.282 11 C 0.051 3.949 12 N -0.320 5.320 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.086 0.914 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.299 5.299 23 C -0.101 4.101 24 C -0.077 4.077 25 C -0.150 4.150 26 C 0.103 3.897 27 F -0.138 7.138 28 C -0.150 4.150 29 C -0.069 4.069 30 H 0.219 0.781 31 H 0.399 0.601 32 H 0.408 0.592 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -18.641 16.720 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.202 4.202 3 C 0.219 3.781 4 H 0.141 0.859 5 N -0.393 5.393 6 C 0.417 3.583 7 O -0.436 6.436 8 N -0.290 5.290 9 C 0.024 3.976 10 C -0.313 4.313 11 C -0.098 4.098 12 N -0.102 5.102 13 C 0.113 3.887 14 C -0.572 4.572 15 H 0.104 0.896 16 C -0.128 4.128 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 N -0.129 5.129 23 C -0.102 4.102 24 C -0.095 4.095 25 C -0.168 4.168 26 C 0.084 3.916 27 F -0.117 7.117 28 C -0.169 4.169 29 C -0.087 4.087 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.243 0.757 33 H 0.180 0.820 34 H 0.186 0.814 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.130 -18.020 16.078 27.025 hybrid contribution -0.456 0.034 -0.427 0.626 sum -12.586 -17.987 15.651 26.960 Atomic orbital electron populations 1.24952 0.95850 1.00039 0.98155 1.23104 0.94203 1.00831 1.02014 1.16139 0.83360 0.92836 0.85779 0.85939 1.45097 1.71893 1.05915 1.16421 1.15545 0.78213 0.82626 0.81918 1.90882 1.55349 1.49148 1.48190 1.41320 1.68145 1.04962 1.14608 1.18763 1.01476 0.83448 0.93952 1.21529 1.17410 0.89060 1.03309 1.22553 1.00432 1.00138 0.86719 1.48591 1.47143 1.02984 1.11449 1.20041 0.98025 0.85902 0.84723 1.21112 0.96632 1.18255 1.21193 0.89635 1.24841 0.94852 0.97204 0.95918 1.69872 1.13377 1.39977 1.29287 0.86904 0.80715 0.82923 0.79549 1.19712 1.20559 1.18866 1.77385 1.26210 0.90181 1.19159 1.19723 1.01216 0.94585 0.94651 1.20815 0.97426 0.91775 0.99520 1.21144 1.01782 0.98276 0.95631 1.17788 0.99100 0.80352 0.94362 1.91521 1.86662 1.39450 1.94068 1.21161 1.02940 0.93016 0.99759 1.20889 0.95786 0.96199 0.95873 0.76463 0.76475 0.75683 0.81979 0.81402 0.94061 0.93322 0.92193 0.84846 0.84284 0.84221 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.20 -2.01 12.81 -37.12 -0.48 -2.49 16 3 C 0.32 2.94 2.62 -71.87 -0.19 2.75 16 4 H 0.12 1.19 7.44 -51.93 -0.39 0.80 16 5 N -0.74 -7.14 5.00 -62.61 -0.31 -7.45 16 6 C 0.72 10.12 8.48 -86.92 -0.74 9.38 16 7 O -0.56 -9.67 13.13 5.28 0.07 -9.60 16 8 N -0.64 -9.66 5.45 -15.51 -0.08 -9.74 16 9 C 0.28 5.47 8.11 -154.36 -1.25 4.22 16 10 C -0.28 -5.44 9.61 -39.84 -0.38 -5.82 16 11 C 0.05 0.97 11.44 -17.24 -0.20 0.78 16 12 N -0.32 -7.20 3.67 -62.56 -0.23 -7.43 16 13 C 0.23 5.47 5.33 -5.19 -0.03 5.44 16 14 C -0.53 -15.00 9.79 -34.44 -0.34 -15.33 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 18 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 22 N -0.30 -6.77 12.42 31.44 0.39 -6.38 16 23 C -0.10 -0.73 4.92 -104.62 -0.51 -1.25 16 24 C -0.08 -0.49 9.03 -39.59 -0.36 -0.85 16 25 C -0.15 -0.98 10.03 -39.52 -0.40 -1.38 16 26 C 0.10 0.78 7.30 -39.42 -0.29 0.49 16 27 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 28 C -0.15 -0.98 10.03 -39.52 -0.40 -1.37 16 29 C -0.07 -0.44 9.67 -39.59 -0.38 -0.83 16 30 H 0.22 1.23 7.80 -54.09 -0.42 0.81 16 31 H 0.40 2.75 6.90 -40.82 -0.28 2.47 16 32 H 0.41 4.94 8.84 -40.82 -0.36 4.58 16 33 H 0.16 3.06 5.91 -52.48 -0.31 2.75 16 34 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 35 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 36 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.13 0.63 6.93 -52.48 -0.36 0.27 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.14 0.65 8.04 -52.48 -0.42 0.23 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -35.60 370.06 -8.07 -43.68 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.17 Total: 8.09 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -5.46 Total: -5.22 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.54 Total: -56.75 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.60 -8.07 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491821056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.799 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.18 seconds