Wall clock time and date at job start Wed Apr 1 2020 00:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47072 * 2 1 4 4 C 1.50699 * 109.47459 * 240.00521 * 2 1 3 5 5 O 1.21304 * 119.99686 * 244.41901 * 4 2 1 6 6 N 1.34775 * 120.00243 * 64.41259 * 4 2 1 7 7 C 1.40595 * 120.00158 * 180.02562 * 6 4 2 8 8 C 1.40657 * 126.07874 * 359.69443 * 7 6 4 9 9 N 1.30910 * 108.38107 * 179.81595 * 8 7 6 10 10 N 1.40062 * 108.41013 * 0.44202 * 9 8 7 11 11 C 1.37325 * 126.06923 * 179.69524 * 10 9 8 12 12 H 1.08006 * 119.99778 * 185.18047 * 11 10 9 13 13 C 1.38984 * 120.00213 * 5.18415 * 11 10 9 14 14 N 1.31300 * 119.99565 * 354.82720 * 13 11 10 15 15 Si 1.86801 * 120.00124 * 174.83197 * 13 11 10 16 16 H 1.48502 * 109.47237 * 94.99507 * 15 13 11 17 17 H 1.48506 * 109.46698 * 214.99395 * 15 13 11 18 18 H 1.48496 * 109.47006 * 334.99151 * 15 13 11 19 19 C 1.35680 * 126.08582 * 180.02562 * 7 6 4 20 20 C 1.50700 * 109.47148 * 119.99841 * 2 1 3 21 21 C 1.38343 * 119.91162 * 234.05318 * 20 2 1 22 22 C 1.38557 * 120.27842 * 180.02562 * 21 20 2 23 23 F 1.35108 * 119.94874 * 179.97438 * 22 21 20 24 24 C 1.38195 * 120.10198 * 359.97438 * 22 21 20 25 25 C 1.39586 * 119.81496 * 359.97438 * 24 22 21 26 26 C 1.43205 * 120.13543 * 179.97438 * 25 24 22 27 27 N 5.95766 * 87.45861 * 147.68176 * 2 1 3 28 28 C 1.37934 * 119.90730 * 53.77943 * 20 2 1 29 29 H 1.08994 * 109.47116 * 299.99686 * 1 2 3 30 30 H 1.09006 * 109.47066 * 60.00053 * 1 2 3 31 31 H 1.09005 * 109.46810 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47313 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47181 * 299.99961 * 3 2 1 34 34 H 1.09003 * 109.47014 * 59.99959 * 3 2 1 35 35 H 0.97003 * 120.00063 * 0.02562 * 6 4 2 36 36 H 1.07997 * 125.80530 * 359.96145 * 8 7 6 37 37 H 0.97003 * 119.99656 * 180.02562 * 14 13 11 38 38 H 1.08001 * 126.23999 * 359.97438 * 19 7 6 39 39 H 1.08003 * 119.86039 * 359.97438 * 21 20 2 40 40 H 1.08003 * 120.09489 * 179.97438 * 24 22 21 41 41 H 1.08002 * 120.04928 * 0.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6622 -1.7412 -1.1210 6 7 1.7818 -0.2002 -2.4526 7 6 2.2501 -0.8632 -3.6006 8 6 2.9938 -2.0569 -3.6223 9 7 3.2420 -2.3659 -4.8700 10 7 2.6779 -1.3807 -5.6904 11 6 2.7280 -1.3450 -7.0622 12 1 2.3306 -0.4937 -7.5951 13 6 3.2899 -2.4043 -7.7650 14 7 3.8637 -3.3913 -7.1166 15 14 3.2288 -2.4236 -9.6319 16 1 4.4902 -1.8579 -10.1743 17 1 3.0684 -3.8213 -10.1074 18 1 2.0794 -1.6071 -10.0980 19 6 2.0704 -0.4621 -4.8842 20 6 2.0323 -0.7104 1.2305 21 6 2.9260 -0.0775 2.0759 22 6 3.3931 -0.7237 3.2090 23 9 4.2662 -0.0996 4.0298 24 6 2.9675 -2.0057 3.5009 25 6 2.0651 -2.6477 2.6513 26 6 1.6199 -3.9763 2.9469 27 7 1.2658 -5.0298 3.1820 28 6 1.5955 -1.9877 1.5137 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.2784 0.6243 -2.5401 36 1 3.3048 -2.6233 -2.7571 37 1 4.2562 -4.1305 -7.6071 38 1 1.5425 0.4224 -5.2088 39 1 3.2615 0.9242 1.8513 40 1 3.3320 -2.5095 4.3840 41 1 0.8947 -2.4782 0.8544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795856461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:11 Heat of formation + Delta-G solvation = 59.063013 kcal Electronic energy + Delta-G solvation = -28423.178302 eV Core-core repulsion = 24219.940906 eV Total energy + Delta-G solvation = -4203.237396 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.16252 -40.81571 -39.63413 -38.55873 -36.73047 -35.24715 -34.28975 -33.14460 -31.42974 -30.37653 -30.11986 -27.78856 -27.72961 -25.12823 -24.60603 -23.53051 -22.58838 -20.98107 -20.27407 -19.38794 -18.45809 -17.44861 -16.93732 -16.71396 -16.65156 -16.11909 -15.84333 -15.47022 -15.39829 -14.76124 -14.56412 -14.23972 -14.07911 -13.83355 -13.70356 -13.49033 -13.35495 -12.96509 -12.95558 -12.67370 -12.44406 -12.41063 -12.32064 -12.05129 -11.96632 -11.69575 -11.45758 -11.32102 -11.27639 -11.18810 -10.96005 -10.54810 -10.18613 -9.38520 -9.19103 -9.08890 -8.99050 -8.82166 -8.08649 -6.73751 -6.58361 -4.25429 0.37809 0.83088 2.42644 2.57619 2.75554 2.99664 3.03559 3.09084 3.34549 3.48639 3.61683 3.65162 3.84693 3.95874 4.19100 4.37526 4.53497 4.61304 4.67720 4.71891 4.76097 4.87014 4.99230 5.01388 5.19825 5.31304 5.44766 5.48221 5.53245 5.62536 5.70893 5.81358 5.82984 5.92865 6.11137 6.20694 6.40839 6.44835 6.86863 6.92627 7.07390 7.21103 7.24368 7.83425 8.12239 8.24956 8.59281 8.79498 9.35323 9.64543 10.37759 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002473 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.189431 B =11321.747949 C =12001.064700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.148 4.148 4 C 0.507 3.493 5 O -0.526 6.526 6 N -0.618 5.618 7 C -0.061 4.061 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.142 5.142 11 C -0.324 4.324 12 H 0.116 0.884 13 C 0.047 3.953 14 N -0.769 5.769 15 Si 0.934 3.066 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.263 1.263 19 C -0.083 4.083 20 C -0.026 4.026 21 C -0.119 4.119 22 C 0.098 3.902 23 F -0.134 7.134 24 C -0.110 4.110 25 C 0.001 3.999 26 C 0.258 3.742 27 N -0.409 5.409 28 C -0.046 4.046 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.396 0.604 36 H 0.175 0.825 37 H 0.275 0.725 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 11.469 16.256 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.205 4.205 4 C 0.292 3.708 5 O -0.403 6.403 6 N -0.260 5.260 7 C -0.166 4.166 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.090 4.910 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.395 5.395 15 Si 0.757 3.243 16 H -0.197 1.197 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.234 4.234 20 C -0.027 4.027 21 C -0.138 4.138 22 C 0.079 3.921 23 F -0.113 7.113 24 C -0.131 4.131 25 C -0.003 4.003 26 C -0.058 4.058 27 N -0.084 5.084 28 C -0.067 4.067 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.229 0.771 36 H 0.192 0.808 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.094 8.039 15.891 18.523 hybrid contribution -0.304 1.552 -0.344 1.618 sum -5.397 9.591 15.548 19.049 Atomic orbital electron populations 1.21931 0.91184 1.03444 1.03290 1.19718 0.97628 0.96140 0.90920 1.22023 1.02272 0.92927 1.03322 1.19920 0.81542 0.85743 0.83616 1.90638 1.40073 1.23762 1.85802 1.42435 1.53758 1.25847 1.03971 1.17250 1.14539 1.00222 0.84617 1.24106 1.03400 0.96863 0.96396 1.78262 1.20746 1.11536 0.98678 1.44549 1.28694 1.12579 1.05144 1.19863 1.41964 1.06858 0.76927 0.86631 1.25641 0.95165 0.94945 1.01318 1.70223 1.25857 1.06997 1.36447 0.85830 0.79259 0.78509 0.80668 1.19655 1.20045 1.18755 1.21254 1.12064 1.00710 0.89412 1.19013 0.95684 0.93605 0.94384 1.21362 0.97410 1.01775 0.93254 1.17243 0.92646 0.91496 0.90717 1.91535 1.66651 1.82102 1.71000 1.21036 0.97675 0.93761 1.00612 1.15559 1.00122 0.87489 0.97098 1.25470 0.93878 0.92644 0.93826 1.81265 1.08237 1.11125 1.07782 1.21070 0.98167 0.93499 0.93916 0.90991 0.91119 0.91478 0.91238 0.91143 0.90886 0.77066 0.80780 0.91458 0.83761 0.83428 0.83836 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.16 37.16 0.30 -0.76 16 2 C -0.04 -0.39 0.72 -156.81 -0.11 -0.50 16 3 C -0.15 -1.07 7.01 37.16 0.26 -0.81 16 4 C 0.51 7.63 6.37 -10.99 -0.07 7.56 16 5 O -0.53 -10.13 12.49 5.54 0.07 -10.06 16 6 N -0.62 -9.74 5.29 -10.00 -0.05 -9.79 16 7 C -0.06 -1.32 6.90 -83.84 -0.58 -1.90 16 8 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 9 N -0.26 -7.46 10.41 30.80 0.32 -7.14 16 10 N -0.14 -3.81 3.74 -11.41 -0.04 -3.85 16 11 C -0.32 -8.41 10.24 -14.81 -0.15 -8.56 16 12 H 0.12 2.67 7.84 -52.48 -0.41 2.26 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.77 -21.30 11.83 55.49 0.66 -20.64 16 15 Si 0.93 18.67 29.55 -169.99 -5.02 13.64 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 19 C -0.08 -1.88 11.49 -16.40 -0.19 -2.07 16 20 C -0.03 -0.26 4.32 -104.69 -0.45 -0.72 16 21 C -0.12 -1.06 8.97 -39.42 -0.35 -1.41 16 22 C 0.10 0.91 7.29 -39.48 -0.29 0.62 16 23 F -0.13 -1.30 17.26 2.25 0.04 -1.26 16 24 C -0.11 -0.98 9.73 -39.09 -0.38 -1.36 16 25 C 0.00 0.01 5.73 -106.94 -0.61 -0.60 16 26 C 0.26 3.08 15.33 -22.47 -0.34 2.74 16 27 N -0.41 -5.79 18.54 41.84 0.78 -5.01 16 28 C -0.05 -0.49 7.86 -39.17 -0.31 -0.80 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 31 H 0.07 0.56 7.06 -51.93 -0.37 0.19 16 32 H 0.07 0.55 7.23 -51.93 -0.38 0.18 16 33 H 0.07 0.44 7.33 -51.93 -0.38 0.06 16 34 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 35 H 0.40 4.66 7.72 -40.82 -0.31 4.35 16 36 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.14 2.68 8.06 -52.49 -0.42 2.25 16 39 H 0.15 1.04 5.89 -52.48 -0.31 0.73 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.14 1.52 7.20 -52.49 -0.38 1.14 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -33.86 361.30 -5.43 -39.29 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.06 Total: 7.85 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.56 Total: -8.48 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 1.66 Total: -46.43 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.86 -5.43 -39.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795856461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.357 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds