Wall clock time and date at job start Wed Apr 1 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47072 * 2 1 4 4 C 1.50699 * 109.47459 * 240.00521 * 2 1 3 5 5 O 1.21304 * 119.99686 * 244.41901 * 4 2 1 6 6 N 1.34775 * 120.00243 * 64.41259 * 4 2 1 7 7 C 1.40595 * 120.00158 * 180.02562 * 6 4 2 8 8 C 1.40657 * 126.07874 * 359.69443 * 7 6 4 9 9 N 1.30910 * 108.38107 * 179.81595 * 8 7 6 10 10 N 1.40062 * 108.41013 * 0.44202 * 9 8 7 11 11 C 1.37325 * 126.06923 * 179.69524 * 10 9 8 12 12 H 1.08006 * 119.99778 * 185.18047 * 11 10 9 13 13 C 1.38984 * 120.00213 * 5.18415 * 11 10 9 14 14 N 1.31300 * 119.99565 * 354.82720 * 13 11 10 15 15 Si 1.86801 * 120.00124 * 174.83197 * 13 11 10 16 16 H 1.48502 * 109.47237 * 94.99507 * 15 13 11 17 17 H 1.48506 * 109.46698 * 214.99395 * 15 13 11 18 18 H 1.48496 * 109.47006 * 334.99151 * 15 13 11 19 19 C 1.35680 * 126.08582 * 180.02562 * 7 6 4 20 20 C 1.50700 * 109.47148 * 119.99841 * 2 1 3 21 21 C 1.38343 * 119.91162 * 234.05318 * 20 2 1 22 22 C 1.38557 * 120.27842 * 180.02562 * 21 20 2 23 23 F 1.35108 * 119.94874 * 179.97438 * 22 21 20 24 24 C 1.38195 * 120.10198 * 359.97438 * 22 21 20 25 25 C 1.39586 * 119.81496 * 359.97438 * 24 22 21 26 26 C 1.43205 * 120.13543 * 179.97438 * 25 24 22 27 27 N 5.95766 * 87.45861 * 147.68176 * 2 1 3 28 28 C 1.37934 * 119.90730 * 53.77943 * 20 2 1 29 29 H 1.08994 * 109.47116 * 299.99686 * 1 2 3 30 30 H 1.09006 * 109.47066 * 60.00053 * 1 2 3 31 31 H 1.09005 * 109.46810 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47313 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47181 * 299.99961 * 3 2 1 34 34 H 1.09003 * 109.47014 * 59.99959 * 3 2 1 35 35 H 0.97003 * 120.00063 * 0.02562 * 6 4 2 36 36 H 1.07997 * 125.80530 * 359.96145 * 8 7 6 37 37 H 0.97003 * 119.99656 * 180.02562 * 14 13 11 38 38 H 1.08001 * 126.23999 * 359.97438 * 19 7 6 39 39 H 1.08003 * 119.86039 * 359.97438 * 21 20 2 40 40 H 1.08003 * 120.09489 * 179.97438 * 24 22 21 41 41 H 1.08002 * 120.04928 * 0.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6622 -1.7412 -1.1210 6 7 1.7818 -0.2002 -2.4526 7 6 2.2501 -0.8632 -3.6006 8 6 2.9938 -2.0569 -3.6223 9 7 3.2420 -2.3659 -4.8700 10 7 2.6779 -1.3807 -5.6904 11 6 2.7280 -1.3450 -7.0622 12 1 2.3306 -0.4937 -7.5951 13 6 3.2899 -2.4043 -7.7650 14 7 3.8637 -3.3913 -7.1166 15 14 3.2288 -2.4236 -9.6319 16 1 4.4902 -1.8579 -10.1743 17 1 3.0684 -3.8213 -10.1074 18 1 2.0794 -1.6071 -10.0980 19 6 2.0704 -0.4621 -4.8842 20 6 2.0323 -0.7104 1.2305 21 6 2.9260 -0.0775 2.0759 22 6 3.3931 -0.7237 3.2090 23 9 4.2662 -0.0996 4.0298 24 6 2.9675 -2.0057 3.5009 25 6 2.0651 -2.6477 2.6513 26 6 1.6199 -3.9763 2.9469 27 7 1.2658 -5.0298 3.1820 28 6 1.5955 -1.9877 1.5137 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.2784 0.6243 -2.5401 36 1 3.3048 -2.6233 -2.7571 37 1 4.2562 -4.1305 -7.6071 38 1 1.5425 0.4224 -5.2088 39 1 3.2615 0.9242 1.8513 40 1 3.3320 -2.5095 4.3840 41 1 0.8947 -2.4782 0.8544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795856461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:10 Heat of formation + Delta-G solvation = 38.191822 kcal Electronic energy + Delta-G solvation = -28424.083345 eV Core-core repulsion = 24219.940906 eV Total energy + Delta-G solvation = -4204.142439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.90529 -41.96443 -41.16209 -39.76116 -37.75772 -36.17625 -35.87878 -34.83667 -32.27769 -32.13714 -31.05287 -29.43884 -28.37286 -26.86365 -25.49690 -24.39707 -23.64237 -22.75704 -21.53761 -20.96437 -19.56948 -19.05717 -17.77172 -17.69959 -17.42081 -17.35343 -16.95348 -16.83768 -16.60028 -16.01227 -15.88190 -15.20994 -15.13128 -15.07733 -14.98699 -14.75322 -14.64117 -14.41223 -13.94494 -13.49209 -13.45225 -13.29523 -13.21284 -13.07462 -13.02743 -12.88633 -12.84670 -12.75441 -12.62996 -12.08127 -12.02909 -11.89999 -11.74312 -10.97489 -10.77180 -10.49575 -10.06581 -10.03734 -9.77037 -8.47300 -8.45044 -6.21356 -0.42011 0.05536 1.25476 1.40723 1.46100 1.56044 1.59157 1.68670 1.91379 2.08924 2.32774 2.56051 2.58971 2.70743 2.97760 3.11004 3.17270 3.42234 3.83802 3.89565 3.91747 4.03756 4.05923 4.14695 4.42711 4.48275 4.65327 4.76787 4.83356 4.87317 4.90825 4.94674 5.00582 5.03780 5.12567 5.14370 5.21595 5.33463 5.34022 5.44521 5.53851 5.68502 5.99370 6.29130 6.36629 6.77768 6.82568 7.45861 7.52113 7.73421 8.54291 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002473 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.189431 B =11321.747949 C =12001.064700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C -0.150 4.150 4 C 0.505 3.495 5 O -0.571 6.571 6 N -0.611 5.611 7 C -0.039 4.039 8 C -0.060 4.060 9 N -0.314 5.314 10 N -0.171 5.171 11 C -0.354 4.354 12 H 0.141 0.859 13 C -0.007 4.007 14 N -0.826 5.826 15 Si 1.017 2.983 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.242 1.242 19 C -0.079 4.079 20 C -0.039 4.039 21 C -0.106 4.106 22 C 0.094 3.906 23 F -0.134 7.134 24 C -0.099 4.099 25 C -0.010 4.010 26 C 0.278 3.722 27 N -0.454 5.454 28 C -0.053 4.053 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.419 0.581 36 H 0.166 0.834 37 H 0.274 0.726 38 H 0.189 0.811 39 H 0.172 0.828 40 H 0.162 0.838 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 15.066 16.619 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.207 4.207 4 C 0.292 3.708 5 O -0.449 6.449 6 N -0.256 5.256 7 C -0.145 4.145 8 C -0.236 4.236 9 N -0.146 5.146 10 N 0.060 4.940 11 C -0.485 4.485 12 H 0.158 0.842 13 C -0.218 4.218 14 N -0.455 5.455 15 Si 0.836 3.164 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.165 1.165 19 C -0.229 4.229 20 C -0.039 4.039 21 C -0.125 4.125 22 C 0.075 3.925 23 F -0.113 7.113 24 C -0.120 4.120 25 C -0.014 4.014 26 C -0.037 4.037 27 N -0.129 5.129 28 C -0.074 4.074 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.257 0.743 36 H 0.182 0.818 37 H 0.084 0.916 38 H 0.206 0.794 39 H 0.189 0.811 40 H 0.179 0.821 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.346 11.698 16.291 21.036 hybrid contribution 0.066 0.521 -0.249 0.582 sum -6.280 12.220 16.042 21.121 Atomic orbital electron populations 1.22008 0.89206 1.03297 1.05410 1.19688 0.99001 0.96894 0.87318 1.22128 1.01909 0.90956 1.05736 1.21056 0.79909 0.85100 0.84694 1.90629 1.41788 1.25944 1.86558 1.42404 1.54087 1.26516 1.02586 1.17300 1.12070 0.98650 0.86512 1.24158 1.05077 0.98786 0.95530 1.78148 1.22662 1.13708 1.00077 1.44818 1.30101 1.13326 1.05759 1.20581 1.42609 1.08092 0.77172 0.84175 1.26853 0.94034 0.94060 1.06877 1.70412 1.28028 1.08245 1.38773 0.84616 0.79978 0.78391 0.73456 1.19027 1.20469 1.16539 1.22032 1.10807 1.00923 0.89173 1.19098 0.96404 0.93468 0.94959 1.21595 0.95952 1.02611 0.92383 1.17283 0.92771 0.91538 0.90943 1.91542 1.66667 1.82058 1.71036 1.21201 0.96462 0.93722 1.00620 1.15536 1.01250 0.86825 0.97756 1.25713 0.92719 0.92656 0.92570 1.81275 1.09855 1.12434 1.09355 1.21104 0.98279 0.94103 0.93881 0.88098 0.89804 0.92860 0.91979 0.89733 0.87628 0.74320 0.81752 0.91585 0.79443 0.81072 0.82055 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.16 71.98 0.59 -1.10 16 2 C -0.03 -0.43 0.72 -53.67 -0.04 -0.47 16 3 C -0.15 -1.51 7.01 71.98 0.50 -1.01 16 4 C 0.50 14.60 6.37 87.66 0.56 15.16 16 5 O -0.57 -22.32 12.49 -3.10 -0.04 -22.36 16 6 N -0.61 -18.11 5.29 -303.92 -1.61 -19.71 16 7 C -0.04 -1.68 6.90 37.73 0.26 -1.42 16 8 C -0.06 -3.18 10.85 85.42 0.93 -2.26 16 9 N -0.31 -18.73 10.41 -56.46 -0.59 -19.32 16 10 N -0.17 -9.28 3.74 -190.01 -0.71 -9.99 16 11 C -0.35 -18.44 10.24 84.01 0.86 -17.58 16 12 H 0.14 6.29 7.84 -2.91 -0.02 6.27 16 13 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 14 N -0.83 -47.83 11.83 21.66 0.26 -47.57 16 15 Si 1.02 38.39 29.55 68.60 2.03 40.42 16 16 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 17 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.24 -8.22 7.11 99.48 0.71 -7.52 16 19 C -0.08 -3.47 11.49 83.38 0.96 -2.52 16 20 C -0.04 -0.70 4.32 -19.91 -0.09 -0.78 16 21 C -0.11 -1.60 8.97 22.37 0.20 -1.40 16 22 C 0.09 1.52 7.29 22.34 0.16 1.68 16 23 F -0.13 -2.26 17.26 44.97 0.78 -1.48 16 24 C -0.10 -1.62 9.73 22.59 0.22 -1.40 16 25 C -0.01 -0.20 5.73 -21.37 -0.12 -0.33 16 26 C 0.28 6.76 15.33 88.33 1.35 8.12 16 27 N -0.45 -13.22 18.54 19.01 0.35 -12.86 16 28 C -0.05 -1.10 7.86 22.54 0.18 -0.93 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.79 7.88 -2.38 -0.02 0.77 16 31 H 0.05 0.80 7.06 -2.38 -0.02 0.78 16 32 H 0.06 0.76 7.23 -2.39 -0.02 0.74 16 33 H 0.08 0.65 7.33 -2.39 -0.02 0.63 16 34 H 0.11 0.45 7.79 -2.39 -0.02 0.43 16 35 H 0.42 8.41 7.72 -92.71 -0.72 7.69 16 36 H 0.17 8.87 5.92 -2.91 -0.02 8.86 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.19 6.33 8.06 -2.91 -0.02 6.30 16 39 H 0.17 1.72 5.89 -2.91 -0.02 1.70 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.13 2.91 7.20 -2.91 -0.02 2.89 16 Total: -1.00 -79.61 361.30 7.86 -71.75 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.40 Total: 27.25 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 6.99 Total: -6.11 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -2.30 Total: -109.46 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -79.61 7.86 -71.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795856461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.940 kcal (2) G-P(sol) polarization free energy of solvation -79.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds