Wall clock time and date at job start Wed Apr 1 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.49629 * 2 1 4 4 C 1.53199 * 109.49639 * 239.93414 * 2 1 3 5 5 N 1.46920 * 108.77528 * 185.41007 * 4 2 1 6 6 C 1.34772 * 120.63253 * 233.58588 * 5 4 2 7 7 O 1.21361 * 120.00053 * 353.07729 * 6 5 4 8 8 C 1.49308 * 120.00131 * 173.07202 * 6 5 4 9 9 O 1.21404 * 119.99971 * 353.36700 * 8 6 5 10 10 N 1.34773 * 120.00126 * 173.36625 * 8 6 5 11 11 C 1.40294 * 120.00152 * 180.02562 * 10 8 6 12 12 C 1.40722 * 126.10020 * 0.02562 * 11 10 8 13 13 N 1.30873 * 108.37901 * 180.02562 * 12 11 10 14 14 N 1.40069 * 108.43637 * 0.02562 * 13 12 11 15 15 C 1.37298 * 126.05807 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00171 * 179.97438 * 15 14 13 17 17 C 1.39000 * 119.99769 * 359.97372 * 15 14 13 18 18 N 1.31289 * 120.00468 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47104 * 89.99907 * 19 17 15 21 21 H 1.48498 * 109.46980 * 210.00004 * 19 17 15 22 22 H 1.48500 * 109.46505 * 329.99854 * 19 17 15 23 23 C 1.35792 * 126.09867 * 179.71761 * 11 10 8 24 24 C 1.46931 * 118.73731 * 53.61265 * 5 4 2 25 25 C 1.53193 * 108.77103 * 306.38720 * 24 5 4 26 26 C 1.53035 * 109.49935 * 120.09857 * 2 1 3 27 27 F 1.39901 * 109.46059 * 301.33483 * 26 2 1 28 28 F 1.39902 * 109.46269 * 61.29623 * 26 2 1 29 29 H 1.09004 * 109.46703 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46840 * 300.06269 * 1 2 3 31 31 H 1.08995 * 109.47342 * 60.06554 * 1 2 3 32 32 H 1.08994 * 109.58611 * 305.20363 * 4 2 1 33 33 H 1.09004 * 109.58311 * 65.48299 * 4 2 1 34 34 H 0.97005 * 120.00123 * 359.97438 * 10 8 6 35 35 H 1.08002 * 125.80906 * 0.04620 * 12 11 10 36 36 H 0.96998 * 120.00471 * 179.97438 * 18 17 15 37 37 H 1.07993 * 126.25620 * 359.97438 * 23 11 10 38 38 H 1.08997 * 109.58855 * 66.17489 * 24 5 4 39 39 H 1.08999 * 109.58595 * 186.46098 * 24 5 4 40 40 H 1.09007 * 109.49088 * 174.58819 * 25 24 5 41 41 H 1.08996 * 109.50133 * 294.64879 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5045 -0.8288 -1.1699 6 6 4.2810 -0.3858 -2.1785 7 8 3.7736 -0.0108 -3.2152 8 6 5.7654 -0.3564 -2.0204 9 8 6.2666 -0.6160 -0.9456 10 7 6.5489 -0.0416 -3.0709 11 6 7.9437 -0.0145 -2.9225 12 6 8.6575 -0.2929 -1.7421 13 7 9.9356 -0.1651 -1.9929 14 7 10.0890 0.1989 -3.3368 15 6 11.2796 0.4274 -3.9812 16 1 11.2842 0.7042 -5.0251 17 6 12.4791 0.3027 -3.2901 18 7 12.4737 -0.0332 -2.0209 19 14 14.0991 0.6144 -4.1666 20 1 14.4622 2.0487 -4.0403 21 1 15.1624 -0.2214 -3.5535 22 1 13.9600 0.2635 -5.6028 23 6 8.8460 0.2794 -3.8938 24 6 4.1053 -1.4267 0.0303 25 6 3.5708 -0.6953 1.2657 26 6 2.0408 -0.7234 1.2481 27 9 1.5498 -0.0838 2.3913 28 9 1.5992 -2.0508 1.2310 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.6052 -1.7212 -1.2985 33 1 1.7615 -0.1586 -2.1391 34 1 6.1484 0.1654 -3.9298 35 1 8.2243 -0.5659 -0.7912 36 1 13.3107 -0.1206 -1.5386 37 1 8.6209 0.5338 -4.9189 38 1 3.8375 -2.4818 0.0860 39 1 5.1897 -1.3268 -0.0155 40 1 3.9335 -1.1903 2.1666 41 1 3.9164 0.3384 1.2544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810439013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:18 Heat of formation + Delta-G solvation = -64.480777 kcal Electronic energy + Delta-G solvation = -29949.786376 eV Core-core repulsion = 25310.422494 eV Total energy + Delta-G solvation = -4639.363882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.22347 -47.17729 -40.93388 -39.71469 -38.29826 -37.45855 -34.75451 -33.71754 -33.22714 -31.94033 -30.40820 -28.29644 -27.50322 -26.07154 -25.04533 -23.30998 -23.07070 -21.28246 -20.77962 -19.78952 -19.61459 -17.86886 -17.67937 -17.46342 -17.02880 -16.71400 -16.39564 -15.65676 -15.61497 -15.40674 -15.19014 -14.70486 -14.39926 -14.06799 -13.96290 -13.79165 -13.49960 -13.47088 -13.28320 -13.17606 -13.07946 -12.83405 -12.60339 -12.42129 -12.10405 -11.81089 -11.74467 -11.53869 -11.44845 -11.34442 -11.09987 -10.93683 -10.62775 -10.59263 -10.39770 -9.31295 -9.10911 -8.97948 -8.77047 -8.21353 -6.88581 -6.67021 -4.34965 1.45806 2.31599 2.87865 2.99910 3.05046 3.17617 3.40342 3.55122 3.60124 3.75805 3.85173 4.00872 4.08182 4.27216 4.38385 4.45110 4.75598 4.79179 4.87605 4.91856 4.97848 5.13360 5.19907 5.29056 5.39306 5.43832 5.56985 5.68923 5.79428 5.89348 6.08034 6.15720 6.25901 6.63988 6.80901 6.93484 6.95726 7.09462 7.56351 7.74031 7.95953 8.09210 8.36424 8.60048 9.22937 9.51335 10.28579 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.002242 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.686451 B =12486.109482 C =13141.352401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 H 0.105 0.895 4 C 0.114 3.886 5 N -0.589 5.589 6 C 0.520 3.480 7 O -0.525 6.525 8 C 0.486 3.514 9 O -0.513 6.513 10 N -0.573 5.573 11 C -0.075 4.075 12 C -0.023 4.023 13 N -0.261 5.261 14 N -0.136 5.136 15 C -0.321 4.321 16 H 0.119 0.881 17 C 0.046 3.954 18 N -0.766 5.766 19 Si 0.936 3.064 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.263 1.263 23 C -0.076 4.076 24 C 0.049 3.951 25 C -0.168 4.168 26 C 0.289 3.711 27 F -0.201 7.201 28 F -0.197 7.197 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.411 0.589 35 H 0.179 0.821 36 H 0.277 0.723 37 H 0.150 0.850 38 H 0.073 0.927 39 H 0.178 0.822 40 H 0.101 0.899 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 -0.789 2.780 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 H 0.123 0.877 4 C -0.008 4.008 5 N -0.323 5.323 6 C 0.303 3.697 7 O -0.401 6.401 8 C 0.268 3.732 9 O -0.393 6.393 10 N -0.214 5.214 11 C -0.181 4.181 12 C -0.199 4.199 13 N -0.091 5.091 14 N 0.097 4.903 15 C -0.453 4.453 16 H 0.136 0.864 17 C -0.171 4.171 18 N -0.392 5.392 19 Si 0.760 3.240 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.228 4.228 24 C -0.072 4.072 25 C -0.207 4.207 26 C 0.253 3.747 27 F -0.181 7.181 28 F -0.179 7.179 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.246 0.754 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.091 0.909 39 H 0.193 0.807 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.921 -0.901 3.651 17.334 hybrid contribution -0.701 0.238 -0.902 1.167 sum -17.622 -0.662 2.749 17.847 Atomic orbital electron populations 1.21774 0.92242 1.03360 1.03420 1.22516 0.98649 1.01680 0.93491 0.87704 1.21725 0.79423 1.01736 0.97934 1.47917 1.06063 1.59451 1.18828 1.20186 0.88238 0.77879 0.83399 1.90733 1.75344 1.47125 1.26888 1.19603 0.86833 0.81716 0.85031 1.90161 1.73412 1.50184 1.25557 1.42163 1.04852 1.62133 1.12292 1.17247 0.80494 1.23660 0.96668 1.24152 0.90833 1.06580 0.98351 1.78282 1.14881 1.23096 0.92842 1.44589 1.03506 1.35913 1.06248 1.19946 0.80528 1.48796 0.96063 0.86362 1.25675 1.00420 0.95399 0.95644 1.70199 1.28424 1.33036 1.07551 0.85795 0.79672 0.78965 0.79575 1.19485 1.19996 1.18705 1.21317 0.85276 1.17849 0.98332 1.23365 1.06958 0.96109 0.80730 1.22896 0.90842 1.05275 1.01665 1.21167 0.94007 0.75730 0.83796 1.92999 1.89756 1.81876 1.53511 1.92983 1.91199 1.36895 1.96780 0.91500 0.91279 0.90955 0.90051 0.87518 0.75397 0.80460 0.91265 0.83296 0.90856 0.80674 0.88013 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.95 37.16 0.33 -0.74 16 2 C -0.14 -1.25 2.53 -90.50 -0.23 -1.48 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.11 1.11 5.49 -3.71 -0.02 1.09 16 5 N -0.59 -7.03 2.97 -173.33 -0.52 -7.55 16 6 C 0.52 7.47 7.74 -11.65 -0.09 7.38 16 7 O -0.53 -8.18 15.94 5.49 0.09 -8.09 16 8 C 0.49 8.05 7.74 -11.65 -0.09 7.96 16 9 O -0.51 -9.08 10.24 5.45 0.06 -9.02 16 10 N -0.57 -10.04 5.45 -10.45 -0.06 -10.09 16 11 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 12 C -0.02 -0.57 10.84 -17.02 -0.18 -0.75 16 13 N -0.26 -7.17 10.39 30.81 0.32 -6.85 16 14 N -0.14 -3.57 3.73 -11.40 -0.04 -3.61 16 15 C -0.32 -8.13 10.25 -14.82 -0.15 -8.28 16 16 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16 17 C 0.05 1.15 5.50 -17.50 -0.10 1.06 16 18 N -0.77 -20.53 11.81 55.50 0.66 -19.87 16 19 Si 0.94 18.18 29.55 -169.99 -5.02 13.16 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 C -0.08 -1.71 11.50 -16.37 -0.19 -1.90 16 24 C 0.05 0.55 6.06 -3.71 -0.02 0.53 16 25 C -0.17 -1.66 5.62 -26.61 -0.15 -1.81 16 26 C 0.29 2.90 1.63 -26.69 -0.04 2.85 16 27 F -0.20 -2.22 16.50 2.25 0.04 -2.18 16 28 F -0.20 -2.16 15.63 2.25 0.04 -2.13 16 29 H 0.07 0.48 7.83 -51.93 -0.41 0.07 16 30 H 0.07 0.50 7.78 -51.93 -0.40 0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 33 H 0.11 1.05 7.06 -51.93 -0.37 0.68 16 34 H 0.41 6.19 8.31 -40.82 -0.34 5.85 16 35 H 0.18 4.10 5.92 -52.49 -0.31 3.79 16 36 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 38 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 39 H 0.18 2.34 3.78 -56.77 -0.21 2.13 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -30.35 347.57 -5.24 -35.60 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.52 Total: 11.71 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.51 Total: 3.69 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.36 Total: -47.97 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.14 Total: -17.12 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.30 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.16 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.35 -5.24 -35.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810439013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.884 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds